mRNA_C-linearis_contig101.733.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Match: A0A836CH29_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH29_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.080e-17
Identity = 48/85 (56.47%), Postives = 64/85 (75.29%), Query Frame = 3

Query:   90 SDMMEEVLGSPEKMEQARQAILENPTLKQAMAQLPGFSDMIDSPEKWRENMEMALEMFKAQKATMQQEAADEDNGAADVDDLDDD 344
            S MM+E  GSPEK+E++R+AILENP LKQAMAQLPGFS+M++ P+KW E+M  A EM + Q++ +Q +      G  DVDDLDD+
Sbjct:  158 SPMMDEFFGSPEKIEESRKAILENPMLKQAMAQLPGFSEMLEDPDKWMESMLQAKEMLEQQRSMLQDQGGAPLGG--DVDDLDDE 240

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BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Match: D8LE10_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE10_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 9.640e-13
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 3

Query:   90 SDMMEEVLGSPEKMEQARQAILENPTLKQAMAQLPGFSDMIDS 218
            SDMMEEVLG+PEKMEQARQAIL+NPTLKQAM QLPGF+DMIDS
Sbjct:  164 SDMMEEVLGNPEKMEQARQAILDNPTLKQAMTQLPGFADMIDS 206

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BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Match: A0A7S1ZLX3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZLX3_TRICV)

HSP 1 Score: 64.7 bits (156), Expect = 3.570e-8
Identity = 28/59 (47.46%), Postives = 42/59 (71.19%), Query Frame = 3

Query:   90 SDMMEEVLGSPEKMEQARQAILENPTLKQAMAQLPGFSDMIDSPEKWRENMEMALEMFK 266
            S M ++ +  PE++E++RQ ILENP +K  M  +PG  D+++ PEKWRE M+ A EM+K
Sbjct:  172 SPMFQQYMNDPEQLEKSRQMILENPMMKSMMGSMPGMEDILNDPEKWRETMQAAGEMYK 230

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BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Match: A0A7S4D8F3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8F3_HETAK)

HSP 1 Score: 61.2 bits (147), Expect = 4.980e-8
Identity = 30/82 (36.59%), Postives = 49/82 (59.76%), Query Frame = 3

Query:   90 SDMMEEVLGSPEKMEQARQAILENPTLKQAMAQLPGFSDMIDSPEKWRENMEMALEMFKAQKATMQQEAADEDNGAADVDDL 335
            SDM  ++ G PEK+E+ RQA++ NP +KQ    +PGF ++++ P+ +RE M  A +  KAQ    +   A +     ++DDL
Sbjct:   30 SDMFSQLFGDPEKLEETRQALISNPMMKQMFGSMPGFEEILNDPDAFREAMTTAQQEMKAQAEARKAARAAKSELTNEIDDL 111

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BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Match: A0A7S2Y1L4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1L4_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.200e-7
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 3

Query:   90 SDMMEEVLGSPEKMEQARQAILENPTLKQAMAQLPGFSDMIDSPEKWRENMEMALEMFKAQKATMQQEAADEDNGAADVDDLDDD 344
            S M+ E    PEK+E ARQ I +NP L+++M+ +PG S++ID P+KWRE M  A E     ++              DVDDL +D
Sbjct:  170 SPMLNEFFSDPEKLEMARQQIADNPMLRESMSSMPGMSEIIDDPQKWREAMTAAKEQMDMLRS----------QAPKDVDDLPED 244

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BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Match: A0A7S1UXN8_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UXN8_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.210e-7
Identity = 26/57 (45.61%), Postives = 41/57 (71.93%), Query Frame = 3

Query:   96 MMEEVLGSPEKMEQARQAILENPTLKQAMAQLPGFSDMIDSPEKWRENMEMALEMFK 266
            M +E +  PEK+EQARQ +L+NP LK  + Q+PG  D+++ P+ WRE M+ A+ M++
Sbjct:  146 MFKEFMTDPEKLEQARQMMLQNPMLKGMLGQVPGMEDVVNDPDAWRETMQAAMTMYQ 202

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BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Match: A0A7S2N0G5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N0G5_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 9.220e-6
Identity = 26/59 (44.07%), Postives = 41/59 (69.49%), Query Frame = 3

Query:   90 SDMMEEVLGSPEKMEQARQAILENPTLKQAMAQLPGFSDMIDSPEKWRENMEMALEMFK 266
            S + +E +  PEK+EQ+RQ IL+NP +K  MA +PGF ++++   KWRE M  A +M++
Sbjct:  200 SPLFQEYMKDPEKLEQSRQMILQNPLMKSMMAGMPGFDEILNDEVKWRETMIAAADMYQ 258

[Close]

BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Match: M1VHM4_CYAM1 (Peptidylprolyl isomerase n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VHM4_CYAM1)

HSP 1 Score: 57.8 bits (138), Expect = 2.530e-5
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 3

Query:   90 SDMMEEVLGSPEKMEQARQAILENPTLKQAMAQLPGFSDMIDSPEKWRENMEMALEMFKAQKA-TMQQEAADEDNGAA 320
            S  M+E L S EK E++RQA+L NP L+Q M   P F ++++ P+KW E+M  A E+F  Q   +   EAA + +GAA
Sbjct:  216 SPAMQEYLSSAEKQEESRQALLNNPFLRQWMDADPQFREVVEDPQKWAESMRAARELFAQQGGLSAATEAAGQTSGAA 293

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot

BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
A0A836CH29_9STRA	4.080e-17	56.47	Ubiquitin-like domain-containing protein n=1 Tax=T...	[more]
D8LE10_ECTSI	9.640e-13	90.70	Ubiquitin-like domain-containing protein n=2 Tax=E...	[more]
A0A7S1ZLX3_TRICV	3.570e-8	47.46	Hypothetical protein (Fragment) n=1 Tax=Trieres ch...	[more]
A0A7S4D8F3_HETAK	4.980e-8	36.59	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A7S2Y1L4_9STRA	2.200e-7	40.00	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A7S1UXN8_9STRA	5.210e-7	45.61	Hypothetical protein n=1 Tax=Grammatophora oceanic...	[more]
A0A7S2N0G5_9STRA	9.220e-6	44.07	Hypothetical protein n=1 Tax=Helicotheca tamesis T...	[more]
M1VHM4_CYAM1	2.530e-5	43.59	Peptidylprolyl isomerase n=1 Tax=Cyanidioschyzon m...	[more]

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	80.1
Seed ortholog evalue	7e-13
Seed eggNOG ortholog	2880.D8LE10
KEGG ko	ko:K04523
KEGG Pathway	ko04141,map04141
Hectar predicted targeting category	other localisation
EggNOG free text desc.	ubiquitin
EggNOG OGs	COG5272@1,KOG0010@2759
COG Functional cat.	O
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03051,ko04131
Exons	3
Model size	1277
Cds size	327
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig101.733.1	prot_C-linearis_contig101.733.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig101 211141..212703 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927362.5604157-UTR-C-linearis_contig101:211120..211140	1622927362.5604157-UTR-C-linearis_contig101:211120..211140	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig101 211121..211140 +
1690879653.556523-UTR-C-linearis_contig101:211120..211140	1690879653.556523-UTR-C-linearis_contig101:211120..211140	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig101 211121..211140 +
1622927362.6244667-UTR-C-linearis_contig101:212703..213633	1622927362.6244667-UTR-C-linearis_contig101:212703..213633	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig101 212704..213633 +
1690879653.6055188-UTR-C-linearis_contig101:212703..213633	1690879653.6055188-UTR-C-linearis_contig101:212703..213633	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig101 212704..213633 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927362.5768268-CDS-C-linearis_contig101:211140..211197	1622927362.5768268-CDS-C-linearis_contig101:211140..211197	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 211141..211197 +
1690879653.5683424-CDS-C-linearis_contig101:211140..211197	1690879653.5683424-CDS-C-linearis_contig101:211140..211197	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 211141..211197 +
1622927362.5908391-CDS-C-linearis_contig101:212118..212250	1622927362.5908391-CDS-C-linearis_contig101:212118..212250	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 212119..212250 +
1690879653.5788653-CDS-C-linearis_contig101:212118..212250	1690879653.5788653-CDS-C-linearis_contig101:212118..212250	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 212119..212250 +
1622927362.6071959-CDS-C-linearis_contig101:212565..212703	1622927362.6071959-CDS-C-linearis_contig101:212565..212703	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 212566..212703 +
1690879653.5888305-CDS-C-linearis_contig101:212565..212703	1690879653.5888305-CDS-C-linearis_contig101:212565..212703	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 212566..212703 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig101:211121..213633+
coding sequence from alignment at C-linearis_contig101:211121..213633+

protein sequence of mRNA_C-linearis_contig101.733.1

>prot_C-linearis_contig101.733.1 ID=prot_C-linearis_contig101.733.1|Name=mRNA_C-linearis_contig101.733.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=109bp
MPGGMPPGVTPEMYQKMMKEMMNSDMMEEVLGSPEKMEQARQAILENPTL
KQAMAQLPGFSDMIDSPEKWRENMEMALEMFKAQKATMQQEAADEDNGAA
DVDDLDDD*

mRNA from alignment at C-linearis_contig101:211121..213633+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig101.733.1 ID=mRNA_C-linearis_contig101.733.1|Name=mRNA_C-linearis_contig101.733.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2513bp|location=Sequence derived from alignment at C-linearis_contig101:211121..213633+ (Chordaria linearis ClinC8C monoicous)
CGGGAGGCTTGGGCGGGGGGATGCCGGGGGGCATGCCTCCGGGCGTGACG
CCCGAGATGTACCAGAAGATGATGAAGGTGTGTGTGTGAGTTTGATTCAT
TTTCTCGTCCAGTGGGTTGTTGTTGCTCTGTGTGTTCTCTACTCTCGTGA
AGTCAAAGTTAATGCTAAGTGGTGGCTTTCGTGGGTTTGTCTAGCACCGT
AGACTATAAAATAGTAGCTGGTTTACCTTGTGCGATGTTGGCGAGGAAAC
GATATGCGGGTGAACCAACGCTTGACCTGACCTGCGTTGGGGTAAGGTAT
GAGTCATCCCGACGGGGGTCAGTCGTATGTGTGCTCCCTCTCGGAATGAG
AACCCGAACCCATCCTTTGCAGATGGTTAGTTTGCCTACGTCGTGAAGAT
CTGTGAGACGTCAGCATTTTCCGGGGACCCTTTCTTGGCTGTGCCTGATT
GCATATGTGTTTGATGCCTATGATATACGTTTTGTGTATGACATCACACC
TTTTTGTTTGGTGATGCTTGGTGGCGGCGTTGCGCAGGGTAAGCTGTAGG
AGCGCCCTTGTCCCTAGAGCAGTGTTTCCACCATAAGACTCAAGTGGAAG
GCACGTTCGTGGTGTTGGCGGTTTTTCTGCTGTTGCTTCAGGTGTTTCGA
ATTTGCTCCTTTCCGAGACTGTCTTGTTGATATTGTCTGTACAATATTCC
TCATCTTCACAGGGGTTTGTGTTGTTGACTTGTTCTTTATGGCCTCGCCG
GGCAACGAACCTCGATATTCGATGGGTGTTGGTGTTCGTTTCGTGCGTGT
GTCATGTATGACGATGTACTCGCACGTACCTAGCATTGACCAACGAGAAG
ACGAAAGCTTGAAACTTGTCACTCTTGGCAGGAAAGACGGACGCGGTGTT
TGTTTTTTTCGTGTCGAAACCTTACCTCCCCCCTCGCATTCTCCCAACAT
CGTCTGCGCTGGCTGTGCTTTTTCATCCCGCAACACTCCCTCCCGCAGGA
GATGATGAACTCCGATATGATGGAGGAAGTGCTGGGCAGCCCCGAGAAGA
TGGAGCAGGCACGGCAGGCCATCCTAGAAAACCCTACCCTCAAGCAGGCC
ATGGCGCAGTTGCCGGGCTTCTCCGACATGGTGAGTAAACCAGTACTGCG
GTACACCACACAGGGCGGAAGGACTGCTGTCGTTTGTAAAGGAGGGAAGG
TGGCTCTGCGAGAGGTGCCCGTCTGTGGGACCCCTTGTCGGAAATATTTT
TTCAGTGTTGTACATGTAGTACATGGAGCATAGACGAGAAACCTTGGGGT
TGGCTATTGCGTCGAGGTGTAGGAAATGCGGGCGAAACAAGCCCAAGATA
TGTTTGACGCAAAACTGTTGCAGCGGTTGCATCATTACACCCCAAACGAA
CCATTGTGACCCGCCCCTACTGTGTGTGTTTGTGTGCCCCGACAGATTGA
TTCTCCGGAAAAGTGGCGGGAGAACATGGAGATGGCGCTGGAGATGTTCA
AGGCGCAGAAGGCCACGATGCAGCAGGAGGCAGCGGACGAGGACAACGGT
GCCGCGGACGTTGACGACCTGGACGACGACTAAGCCAAGAATTTTTGTAG
CTTGTTTTAGGTTTTGATGTTTTGACGCCGGCGAGTAGGGGAGAGAGAGA
GCGAGACGCTTTACTGATAGTCCCAGCCTTTGTCGCTCTACGCAATTGAG
TAGATCGAGTCTTTCTCGCGGAGTATGGGAAACGGTTCAAAAAAAAGGCG
GGGTCGACCTTGTCTGACTTGATTTGTACCTGACAGGGGGAAGCCCGGGT
GGAGGTACCGGTGTCATTCACCGCCCGTCGGTTTCCGTTTCGCGTCGATT
CGGTTTGTGTGCGGCCGGGGCTGGAGACTGAAAACGTCTATGTTTTGTTG
TTTTTTCTCTAGTGCAGATAGAGCCACCACGCGCAGAAATGGCAGAGGGG
AAAAGGGGGGGCTGAAAGAGAAAGCGGCGACAGAGCAGTTGGCCTACCAG
TACATACCCGCGGCGAGATCTCTCTCGCGCTTAGGCACGAGGATGATGCT
GACGAGATGTGTGATGCACTGGCACATGTCCTTGGAAGGCGCCGCTGCGC
CGACTGACAAACAAACCTTCCGGTTTTTGCGTCGTTGTCCGGGAGTCCCA
TTTCTCTGGCGTGTCAGTAGGTTCCGTGTTTTTTTCTAACTCTCGCTCTG
CCCCAAAATTCGCTCTCGTTTGTCTTTGTTGAATGAGATACAACTGGGCC
AGGCAGGCGTGTTTGCCGTTGGTAGCTGCATCGGTTTCAGTGTTTTTTTC
GAGCGCGCAAGTTTGATTTGGGCACATTTCTGACTGGTGTGGTGCGCAAC
TCTGTTGCCGATATTGAACAAAAAAGGCAGATAAATGGACGACACCCTTG
AGAATCCTCTCGAGAGGTGGCTGTTTTAGAAAGCTTGTGCAAGCGAATCT
CAACAAACATTTCATCCCCCCCCCCGATTCCCTGCATTGTTAGCATTATT
TGCGCTTCGCCAA

Coding sequence (CDS) from alignment at C-linearis_contig101:211121..213633+

>mRNA_C-linearis_contig101.733.1 ID=mRNA_C-linearis_contig101.733.1|Name=mRNA_C-linearis_contig101.733.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at C-linearis_contig101:211121..213633+ (Chordaria linearis ClinC8C monoicous)
ATGCCGGGGGGCATGCCTCCGGGCGTGACGCCCGAGATGTACCAGAAGAT
GATGAAGATGCCGGGGGGCATGCCTCCGGGCGTGACGCCCGAGATGTACC
AGAAGATGATGAAGGAGATGATGAACTCCGATATGATGGAGGAAGTGCTG
GGCAGCCCCGAGAAGATGGAGCAGGCACGGCAGGCCATCCTAGAAAACCC
TACCCTCAAGCAGGCCATGGCGCAGTTGCCGGGCTTCTCCGACATGGAGA
TGATGAACTCCGATATGATGGAGGAAGTGCTGGGCAGCCCCGAGAAGATG
GAGCAGGCACGGCAGGCCATCCTAGAAAACCCTACCCTCAAGCAGGCCAT
GGCGCAGTTGCCGGGCTTCTCCGACATGATTGATTCTCCGGAAAAGTGGC
GGGAGAACATGGAGATGGCGCTGGAGATGTTCAAGGCGCAGAAGGCCACG
ATGCAGCAGGAGGCAGCGGACGAGGACAACGGTGCCGCGGACGTTGACGA
CCTGGACGACGACTAAATTGATTCTCCGGAAAAGTGGCGGGAGAACATGG
AGATGGCGCTGGAGATGTTCAAGGCGCAGAAGGCCACGATGCAGCAGGAG
GCAGCGGACGAGGACAACGGTGCCGCGGACGTTGACGACCTGGACGACGA
CTAA