mRNA_C-linearis_contig101.733.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Match: A0A836CH29_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH29_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 4.080e-17 Identity = 48/85 (56.47%), Postives = 64/85 (75.29%), Query Frame = 3 Query: 90 SDMMEEVLGSPEKMEQARQAILENPTLKQAMAQLPGFSDMIDSPEKWRENMEMALEMFKAQKATMQQEAADEDNGAADVDDLDDD 344
S MM+E GSPEK+E++R+AILENP LKQAMAQLPGFS+M++ P+KW E+M A EM + Q++ +Q + G DVDDLDD+
Sbjct: 158 SPMMDEFFGSPEKIEESRKAILENPMLKQAMAQLPGFSEMLEDPDKWMESMLQAKEMLEQQRSMLQDQGGAPLGG--DVDDLDDE 240
BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Match: D8LE10_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE10_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 9.640e-13 Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 3 Query: 90 SDMMEEVLGSPEKMEQARQAILENPTLKQAMAQLPGFSDMIDS 218
SDMMEEVLG+PEKMEQARQAIL+NPTLKQAM QLPGF+DMIDS
Sbjct: 164 SDMMEEVLGNPEKMEQARQAILDNPTLKQAMTQLPGFADMIDS 206
BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Match: A0A7S1ZLX3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZLX3_TRICV) HSP 1 Score: 64.7 bits (156), Expect = 3.570e-8 Identity = 28/59 (47.46%), Postives = 42/59 (71.19%), Query Frame = 3 Query: 90 SDMMEEVLGSPEKMEQARQAILENPTLKQAMAQLPGFSDMIDSPEKWRENMEMALEMFK 266
S M ++ + PE++E++RQ ILENP +K M +PG D+++ PEKWRE M+ A EM+K
Sbjct: 172 SPMFQQYMNDPEQLEKSRQMILENPMMKSMMGSMPGMEDILNDPEKWRETMQAAGEMYK 230
BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Match: A0A7S4D8F3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8F3_HETAK) HSP 1 Score: 61.2 bits (147), Expect = 4.980e-8 Identity = 30/82 (36.59%), Postives = 49/82 (59.76%), Query Frame = 3 Query: 90 SDMMEEVLGSPEKMEQARQAILENPTLKQAMAQLPGFSDMIDSPEKWRENMEMALEMFKAQKATMQQEAADEDNGAADVDDL 335
SDM ++ G PEK+E+ RQA++ NP +KQ +PGF ++++ P+ +RE M A + KAQ + A + ++DDL
Sbjct: 30 SDMFSQLFGDPEKLEETRQALISNPMMKQMFGSMPGFEEILNDPDAFREAMTTAQQEMKAQAEARKAARAAKSELTNEIDDL 111
BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Match: A0A7S2Y1L4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1L4_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 2.200e-7 Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 3 Query: 90 SDMMEEVLGSPEKMEQARQAILENPTLKQAMAQLPGFSDMIDSPEKWRENMEMALEMFKAQKATMQQEAADEDNGAADVDDLDDD 344
S M+ E PEK+E ARQ I +NP L+++M+ +PG S++ID P+KWRE M A E ++ DVDDL +D
Sbjct: 170 SPMLNEFFSDPEKLEMARQQIADNPMLRESMSSMPGMSEIIDDPQKWREAMTAAKEQMDMLRS----------QAPKDVDDLPED 244
BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Match: A0A7S1UXN8_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UXN8_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 5.210e-7 Identity = 26/57 (45.61%), Postives = 41/57 (71.93%), Query Frame = 3 Query: 96 MMEEVLGSPEKMEQARQAILENPTLKQAMAQLPGFSDMIDSPEKWRENMEMALEMFK 266
M +E + PEK+EQARQ +L+NP LK + Q+PG D+++ P+ WRE M+ A+ M++
Sbjct: 146 MFKEFMTDPEKLEQARQMMLQNPMLKGMLGQVPGMEDVVNDPDAWRETMQAAMTMYQ 202
BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Match: A0A7S2N0G5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N0G5_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 9.220e-6 Identity = 26/59 (44.07%), Postives = 41/59 (69.49%), Query Frame = 3 Query: 90 SDMMEEVLGSPEKMEQARQAILENPTLKQAMAQLPGFSDMIDSPEKWRENMEMALEMFK 266
S + +E + PEK+EQ+RQ IL+NP +K MA +PGF ++++ KWRE M A +M++
Sbjct: 200 SPLFQEYMKDPEKLEQSRQMILQNPLMKSMMAGMPGFDEILNDEVKWRETMIAAADMYQ 258
BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Match: M1VHM4_CYAM1 (Peptidylprolyl isomerase n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VHM4_CYAM1) HSP 1 Score: 57.8 bits (138), Expect = 2.530e-5 Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 3 Query: 90 SDMMEEVLGSPEKMEQARQAILENPTLKQAMAQLPGFSDMIDSPEKWRENMEMALEMFKAQKA-TMQQEAADEDNGAA 320
S M+E L S EK E++RQA+L NP L+Q M P F ++++ P+KW E+M A E+F Q + EAA + +GAA
Sbjct: 216 SPAMQEYLSSAEKQEESRQALLNNPFLRQWMDADPQFREVVEDPQKWAESMRAARELFAQQGGLSAATEAAGQTSGAA 293 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.733.1 >prot_C-linearis_contig101.733.1 ID=prot_C-linearis_contig101.733.1|Name=mRNA_C-linearis_contig101.733.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=109bp MPGGMPPGVTPEMYQKMMKEMMNSDMMEEVLGSPEKMEQARQAILENPTLback to top mRNA from alignment at C-linearis_contig101:211121..213633+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig101.733.1 ID=mRNA_C-linearis_contig101.733.1|Name=mRNA_C-linearis_contig101.733.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2513bp|location=Sequence derived from alignment at C-linearis_contig101:211121..213633+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig101:211121..213633+ >mRNA_C-linearis_contig101.733.1 ID=mRNA_C-linearis_contig101.733.1|Name=mRNA_C-linearis_contig101.733.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at C-linearis_contig101:211121..213633+ (Chordaria linearis ClinC8C monoicous)back to top |