mRNA_C-linearis_contig100.690.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig100.690.1 vs. uniprot
Match: A0A6H5L2U5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2U5_9PHAE) HSP 1 Score: 254 bits (648), Expect = 8.470e-79 Identity = 152/215 (70.70%), Postives = 166/215 (77.21%), Query Frame = 1 Query: 97 MRTTVALVLVEVLSVAGTCQGFVG-SSPRLTR----CSITRPASTSARGGSAPALLQMASG-----------AHVRISTALRAAGEDGAA--AAGMPEPPVEPVPEKSNLPFYLDPSTRGGAVVVPTLSLLLPLGAYGALTAVGVDGGKAGAWVGVGYTLIGLIAWVGSYFFRVATKNMTYAVQLKNYEQAVIEKRFSELEEEEVDALLDEVNEQ 687
MR + LVLV V+S A C F+ SSPRL+R CS TR T +R P+ ++ A+ A R STALR AG++G A GMP+PPVEP+ EKSNLPF+LDPSTRGGAVVVPTLSLLLPLGAYGALTAVGVDG KAGAWVGVGYTLIGLIAWVGSYFFRVATKNMTYAVQLKNYEQAVIEKRFSELEEEEVDALLDEVNEQ
Sbjct: 1 MRAAITLVLVAVISAACPCLSFLRCSSPRLSRSGAPCS-TRSGPTGSRANIQPSCVKPAAALASWALAIRTTAGAR-STALRMAGDEGETEVAVGMPKPPVEPLQEKSNLPFFLDPSTRGGAVVVPTLSLLLPLGAYGALTAVGVDGSKAGAWVGVGYTLIGLIAWVGSYFFRVATKNMTYAVQLKNYEQAVIEKRFSELEEEEVDALLDEVNEQ 213
BLAST of mRNA_C-linearis_contig100.690.1 vs. uniprot
Match: D7FSA6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA6_ECTSI) HSP 1 Score: 234 bits (596), Expect = 1.590e-71 Identity = 123/137 (89.78%), Postives = 128/137 (93.43%), Query Frame = 1 Query: 280 STALRAAGEDG--AAAAGMPEPPVEPVPEKSNLPFYLDPSTRGGAVVVPTLSLLLPLGAYGALTAVGVDGGKAGAWVGVGYTLIGLIAWVGSYFFRVATKNMTYAVQLKNYEQAVIEKRFSELEEEEVDALLDEVNE 684
STALR AG++G A GMP+PPVEP EK+NLPF+LDPSTRGGAVVVPTLSLLLPLGAYGALTAVGVDG KAGAWVGVGYTLIGLIAWVGSYFFRVATKNMTYAVQLKNYEQAVIEKRFSELEEEEVDALLDEVNE
Sbjct: 42 STALRIAGDEGDTEVAVGMPKPPVEPTQEKNNLPFFLDPSTRGGAVVVPTLSLLLPLGAYGALTAVGVDGSKAGAWVGVGYTLIGLIAWVGSYFFRVATKNMTYAVQLKNYEQAVIEKRFSELEEEEVDALLDEVNE 178
BLAST of mRNA_C-linearis_contig100.690.1 vs. uniprot
Match: A0A836CJ19_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ19_9STRA) HSP 1 Score: 150 bits (380), Expect = 2.510e-40 Identity = 74/109 (67.89%), Postives = 93/109 (85.32%), Query Frame = 1 Query: 358 EKSNLPFYLDPSTRGGAVVVPTLSLLLPLGAYGALTAVGVDGGKAGAWVGVGYTLIGLIAWVGSYFFRVATKNMTYAVQLKNYEQAVIEKRFSELEEEEVDALLDEVNE 684
+K LPF+LDPSTRGGAVVVP LS+LLP+ AY LT+ G+DG KAG +V V Y L+G++ W G+YFFRVATKNMTYA QL++YEQAVI+KRF EL+E+EV+ALLDE++E
Sbjct: 8 KKGGLPFWLDPSTRGGAVVVPVLSVLLPIAAYFVLTSQGMDGLKAGNYVTVTYILLGMVGWAGTYFFRVATKNMTYAQQLRDYEQAVIQKRFEELQEDEVEALLDEIDE 116
BLAST of mRNA_C-linearis_contig100.690.1 vs. uniprot
Match: A0A7S3XNX5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNX5_HETAK) HSP 1 Score: 118 bits (295), Expect = 4.060e-27 Identity = 61/124 (49.19%), Postives = 89/124 (71.77%), Query Frame = 1 Query: 316 AAAGMPEPPVEPVPEKSNLPFYLDPSTRGGAVVVPTLSLLLPLGAYGALTAVGVDGGKAGAWVGVGYTLIGLIAWVGSYFFRVATKNMTYAVQLKNYEQAVIEKRFSELEEEEVDALLDEVNEQ 687
AAA PE + E++ LP+ L+P+T+GG++VV LSL+ P+GAY AL A G+D AG +VGVG+ ++ + W +Y FRVATK+MTYA QLK+YE AV+ KR EL+++EV AL++E+ +
Sbjct: 83 AAAAQPERAPDAF-ERAGLPWILNPNTKGGSLVVAALSLVFPVGAYYALQAGGMDELDAGRYVGVGFVVVSCVLWTATYLFRVATKDMTYAQQLKDYENAVLAKRLEELQDDEVQALIEEIERE 205
BLAST of mRNA_C-linearis_contig100.690.1 vs. uniprot
Match: A0A7S2YJT9_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YJT9_9STRA) HSP 1 Score: 115 bits (287), Expect = 5.330e-26 Identity = 59/112 (52.68%), Postives = 83/112 (74.11%), Query Frame = 1 Query: 346 EPVPEKSNLPFYLDPSTRGGAVVVPTLSLLLPLGAYGALTAV-GVDGGKAGAWVGVGYTLIGLIAWVGSYFFRVATKNMTYAVQLKNYEQAVIEKRFSELEEEEVDALLDEV 678
EP PEK++LPF+LDP T+GGAVV+ + + P+ Y + AV +D + G +GVG+T++ L+ W+ +Y FRVATK+MTYA QLK+YE AVI KR EL+E+EV AL++EV
Sbjct: 93 EPPPEKTSLPFWLDPGTKGGAVVLTIVLFVAPIFLYNVILAVTDLDALEVGIDIGVGFTVLLLLGWMSTYIFRVATKDMTYAQQLKDYENAVIAKRLEELDEDEVQALVEEV 204
BLAST of mRNA_C-linearis_contig100.690.1 vs. uniprot
Match: A0A1E7FE16_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FE16_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.720e-25 Identity = 56/107 (52.34%), Postives = 74/107 (69.16%), Query Frame = 1 Query: 361 KSNLPFYLDPSTRGGAVVVPTLSLLLPLGAYGALTAV-GVDGGKAGAWVGVGYTLIGLIAWVGSYFFRVATKNMTYAVQLKNYEQAVIEKRFSELEEEEVDALLDEV 678
KSNLPF+LDP TRGGAVV+ + ++P Y T+V G++G AG W+GVG+T + WV +Y FRVATK+MTYA QLK+YE AVI KR EL+++E A +
Sbjct: 12 KSNLPFWLDPGTRGGAVVLGIILFIVPFIGYAIATSVFGIEGVDAGKWIGVGFTAAATLVWVFTYIFRVATKDMTYAKQLKDYENAVIAKRLEELDDDEXQAXXXXI 118
BLAST of mRNA_C-linearis_contig100.690.1 vs. uniprot
Match: B7FZY4_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FZY4_PHATC) HSP 1 Score: 112 bits (279), Expect = 3.250e-25 Identity = 55/108 (50.93%), Postives = 75/108 (69.44%), Query Frame = 1 Query: 358 EKSNLPFYLDPSTRGGAVVVPTLSLLLPLGAYGALTAV-GVDGGKAGAWVGVGYTLIGLIAWVGSYFFRVATKNMTYAVQLKNYEQAVIEKRFSELEEEEVDALLDEV 678
EK+ LPF+LDP T+GGAV + L P+ Y +T G D + G W+G+G+T++ + WV +Y FRVATK+MTYA QLK+YE AVI KR EL+E+E+ AL +EV
Sbjct: 68 EKTKLPFWLDPGTKGGAVFLSLALFLFPILVYSIMTTFFGFDEIETGKWIGIGFTVLATLGWVSTYLFRVATKDMTYAKQLKDYENAVIAKRLEELDEDEIQALQEEV 175
BLAST of mRNA_C-linearis_contig100.690.1 vs. uniprot
Match: A0A7S2KVF4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KVF4_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.030e-24 Identity = 56/111 (50.45%), Postives = 81/111 (72.97%), Query Frame = 1 Query: 358 EKSNLPFYLDPSTRGGAVVVPTLSLLLPLGAYGALTAV-GVDGGKAGAWVGVGYTLIGLIAWVGSYFFRVATKNMTYAVQLKNYEQAVIEKRFSELEEEEVDALLDEVNEQ 687
EKSNLP +LDP T+GGA+V+ + ++P+ Y T V GVD +AG +GVG+++I ++ W +Y FRVATK+MTYA QLK+YE AVI KR EL+E+EV AL++++ +
Sbjct: 75 EKSNLPVFLDPGTKGGAIVLSLILFVIPIVIYQVATGVFGVDEIEAGRDIGVGFSVITMLLWGSTYIFRVATKDMTYAKQLKDYEDAVIAKRLEELDEDEVQALVEDIERE 185
BLAST of mRNA_C-linearis_contig100.690.1 vs. uniprot
Match: A0A7S4JE55_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JE55_9STRA) HSP 1 Score: 110 bits (275), Expect = 1.140e-24 Identity = 55/108 (50.93%), Postives = 77/108 (71.30%), Query Frame = 1 Query: 358 EKSNLPFYLDPSTRGGAVVVPTLSLLLPLGAYGALT-AVGVDGGKAGAWVGVGYTLIGLIAWVGSYFFRVATKNMTYAVQLKNYEQAVIEKRFSELEEEEVDALLDEV 678
E+ LP LDP T+GGA+ + + +LP+ Y +T G D +AG W+GVG+TL+ L+ WV +Y FRVATK+MTYA QLK+YE AVI KR EL+E+EV AL++++
Sbjct: 67 EEKKLPMLLDPGTKGGALFLSLVLFILPIIGYEIVTLGFGFDEIEAGRWIGVGFTLVTLVLWVSTYIFRVATKDMTYAKQLKDYENAVIAKRLEELDEDEVQALVEDI 174
BLAST of mRNA_C-linearis_contig100.690.1 vs. uniprot
Match: A0A7S3B0A8_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B0A8_9EUKA) HSP 1 Score: 108 bits (270), Expect = 4.970e-24 Identity = 61/108 (56.48%), Postives = 75/108 (69.44%), Query Frame = 1 Query: 358 EKSNLPFYLDPSTRGGAVVVPTLSLLLPLGAYGALTA-VGVDGGKAGAWVGVGYTLIGLIAWVGSYFFRVATKNMTYAVQLKNYEQAVIEKRFSELEEEEVDALLDEV 678
EKS+LPF LD T+GG V L ++LP AY +T + +D AG V VGY +G +AW GSY FRVA K+MTYA QLK+YE AVI+KRF EL EEEVDAL+ E+
Sbjct: 55 EKSSLPFILDIGTKGGIVFYSILGIVLPFVAYNIMTGPMELDIVLAGNVVLVGYVGLGTVAWTGSYVFRVANKDMTYAQQLKDYENAVIQKRFEELSEEEVDALMGEI 162 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig100.690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig100.690.1 >prot_C-linearis_contig100.690.1 ID=prot_C-linearis_contig100.690.1|Name=mRNA_C-linearis_contig100.690.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=198bp MRTTVALVLVEVLSVAGTCQGFVGSSPRLTRCSITRPASTSARGGSAPALback to top mRNA from alignment at C-linearis_contig100:255557..259314+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig100.690.1 ID=mRNA_C-linearis_contig100.690.1|Name=mRNA_C-linearis_contig100.690.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3758bp|location=Sequence derived from alignment at C-linearis_contig100:255557..259314+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig100:255557..259314+ >mRNA_C-linearis_contig100.690.1 ID=mRNA_C-linearis_contig100.690.1|Name=mRNA_C-linearis_contig100.690.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1188bp|location=Sequence derived from alignment at C-linearis_contig100:255557..259314+ (Chordaria linearis ClinC8C monoicous)back to top |