mRNA_C-linearis_contig10.588.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.588.1
Unique NamemRNA_C-linearis_contig10.588.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig10.588.1 vs. uniprot
Match: A0A6H5JF90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF90_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 7.120e-80
Identity = 151/306 (49.35%), Postives = 189/306 (61.76%), Query Frame = 2 
Query:  986 AKVHAATIMEIIASLASLRENTQFELGRMVYQAVLSVVAGTGGR------------------SFGVTAERRAESLNIRPNTFRDAQARMCNARHDLPPQTALDKGVYVYNRRKIRSDITLPEILALARQFWHTDDVSRASGNSGDRDMWRESKAWDAPGHPRRQINIEGGGDEVYRRFLEWPEYLAFKAERAARGEVVQDPGRTVFLETRCPCLVMPKIQQCACQIHTQQQLYLTALKMYLKAMHPGGCKCECAWCK-IGCSQWVHMCENLGNFSQYLACDKVDLLGGDAEGTGVYMGRKPACAAF 1846
            A + AA    + ASL +L+++    +G   YQ  L+V AG G                    S GV+   RA SL IR  TF DA+ RM N  HD+ P+ A  +G YVYN RK RSD+T PE++ALAR FWH+DDVSRA+GNSG +DM++ESK  DAP HPRRQ+  +G  D V+R FLE   YLA K+    +     DPGRT FL TRC CLV P   QCACQIHTQQ LYL AL   + ++H   C CEC WC  +GC +W  MC++L  FS  LAC+KV+LL GD++G   + GRKPACAA 
Sbjct:  167 AAIDAANTRALRASLQALKQHCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCKPVESGGVSLAERANSLGIRHETFSDARWRMHNTNHDIAPKIAASEGCYVYNERKTRSDVTNPEVMALARAFWHSDDVSRATGNSG-KDMYKESKKRDAPSHPRRQLMHKG--DSVWRMFLESRRYLALKSRLLEQDSNFTDPGRTTFLSTRCGCLVDPTASQCACQIHTQQTLYLEALSFLMGSIHQD-CDCECNWCDDLGCKRWSVMCQDLSKFSDALACEKVNLLEGDSDGGFEFWGRKPACAAM 468
[Close]
BLAST of mRNA_C-linearis_contig10.588.1 vs. uniprot
Match: A0A6H5K7E6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E6_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 2.780e-76
Identity = 151/306 (49.35%), Postives = 189/306 (61.76%), Query Frame = 2 
Query:  986 AKVHAATIMEIIASLASLRENTQFELGRMVYQAVLSVVAGTGGR------------------SFGVTAERRAESLNIRPNTFRDAQARMCNARHDLPPQTALDKGVYVYNRRKIRSDITLPEILALARQFWHTDDVSRASGNSGDRDMWRESKAWDAPGHPRRQINIEGGGDEVYRRFLEWPEYLAFKAERAARGEVVQDPGRTVFLETRCPCLVMPKIQQCACQIHTQQQLYLTALKMYLKAMHPGGCKCECAWCK-IGCSQWVHMCENLGNFSQYLACDKVDLLGGDAEGTGVYMGRKPACAAF 1846
            A + AA    + ASL +L+++    +G   YQ  L+V AG G                    S GV+   RA SL IR  TF DA+ RM N  HD+ P+ A  +G YVYN RK RSD+T PE++ALAR FWH+DDVSRA+GNSG +DM++ESK  DAP HPRRQ+  +G  D V+R FLE   YLA K+    +     DPGRT FL TRC CLV P   QCACQIHTQQ LYL AL   + ++H   C CEC WC  +GC +W  MC++L  FS  LAC+KV+LL GD++G   + GRKPACAA 
Sbjct:  167 AAIDAANTRALRASLQALKQHCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCKPVESGGVSLAERANSLGIRHETFSDARWRMHNTNHDIAPKIAASEGCYVYNERKTRSDVTNPEVMALARAFWHSDDVSRATGNSG-KDMYKESKKRDAPSHPRRQLMHKG--DSVWRMFLESRRYLALKSRLLEQDSNFTDPGRTTFLSTRCGCLVDPTASQCACQIHTQQTLYLEALSFLMGSIHQD-CDCECNWCDDLGCKRWSVMCQDLSKFSDALACEKVNLLEGDSDGGFEFWGRKPACAAM 468
[Close]
BLAST of mRNA_C-linearis_contig10.588.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 9.060e-71
Identity = 140/319 (43.89%), Postives = 189/319 (59.25%), Query Frame = 2 
Query:  962 KLGKVEEDAKVHAATIME----IIASLASLRENTQFELGRMVYQAVLSVVAGT------------------GGRSFGVTAERRAESLNIRPNTFRDAQARMCNARHDLPPQTALDKGVYVYNRRKIRSDITLPEILALARQFWHTDDVSRASGNSGDRDMWRESKAWDAPGHPRRQINIEGGGDEVYRRFLEWPEYLAFKAERAARGEVVQDPGRTVFLETRCPCLVMPKIQQCACQIHTQQQLYLTALKMYLKAMHPGGCKCECAWCK--IGCSQWVHMCENLGNFSQYLACDKVDLLGGDAEGTGVYMGRKPACAAF 1846
            ++G++ E A   AA   E    ++AS+ +L++++   +GR  Y  V++  AG                         V+   RA+SL +R  TFR A+ RM    H +PPQ AL+KG Y++  RK RSD     ++ LAR+FWH+DD+SRASG+SG + MWR SK      HPRRQ+ +   GD+V+ +FL+WPEYL  KAE         DPGRT+FL TRC CLV PK+ QCACQIHTQQ LYL A +M + A+H   C C C WC    GC +W+ MC++L +FS+ LAC+KVD L  D  G   + GRKPAC A 
Sbjct:  166 RVGELGEAAATKAAVDAENTRALVASIEALKQHSHSNIGRTAYNTVIAAAAGAQHTCDPDDPXXXXXXXXXXXXHGAVSLTARAQSLGVRDATFRAARTRMHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMV--AGDQVWHKFLKWPEYLGLKAELLREDNSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAIH-ANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAM 481
[Close]
BLAST of mRNA_C-linearis_contig10.588.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 3.980e-69
Identity = 140/319 (43.89%), Postives = 189/319 (59.25%), Query Frame = 2 
Query:  962 KLGKVEEDAKVHAATIME----IIASLASLRENTQFELGRMVYQAVLSVVAGT------------------GGRSFGVTAERRAESLNIRPNTFRDAQARMCNARHDLPPQTALDKGVYVYNRRKIRSDITLPEILALARQFWHTDDVSRASGNSGDRDMWRESKAWDAPGHPRRQINIEGGGDEVYRRFLEWPEYLAFKAERAARGEVVQDPGRTVFLETRCPCLVMPKIQQCACQIHTQQQLYLTALKMYLKAMHPGGCKCECAWCK--IGCSQWVHMCENLGNFSQYLACDKVDLLGGDAEGTGVYMGRKPACAAF 1846
            ++G++ E A   AA   E    ++AS+ +L++++   +GR  Y  V++  AG                         V+   RA+SL +R  TFR A+ RM    H +PPQ AL+KG Y++  RK RSD     ++ LAR+FWH+DD+SRASG+SG + MWR SK      HPRRQ+ +   GD+V+ +FL+WPEYL  KAE         DPGRT+FL TRC CLV PK+ QCACQIHTQQ LYL A +M + A+H   C C C WC    GC +W+ MC++L +FS+ LAC+KVD L  D  G   + GRKPAC A 
Sbjct:  790 RVGELGEAAATKAAVDAENTRALVASIEALKQHSHSNIGRTAYNTVIAAAAGAQHTCDPDDPXXXXXXXXXXXXHGAVSLTARAQSLGVRDATFRAARTRMHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMV--AGDQVWHKFLKWPEYLGLKAELLREDNSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAIH-ANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAM 1105
[Close]
BLAST of mRNA_C-linearis_contig10.588.1 vs. uniprot
Match: A0A6H5K491_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K491_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 1.160e-68
Identity = 129/242 (53.31%), Postives = 163/242 (67.36%), Query Frame = 1 
Query: 2107 ARCGRATFLIETDFIEKYKCQAGSTGTCETTPSVTLMVAIVHHSPDDFGRHKTEAWIFVSSEKKHDFDFHAHALRQIVEYYTTGGGKAATAPPAGFVGVFVPLVCIWTDGCAHQYKGKKNFRLIANCREELCGVKIVHNFAATSHFKGPHDGLGGVAKNMMRRAELNTDYARRIHNAKAAYEFLEEKMGRKTHEDSEAFFASWSPYRIRKTHVIWIPFGAIRRPEINLDGIVGTRSLYQFHG 2832
            A  G+   L+ETDFIEKYK +AG+  TC T PS T+MVA+VHHSPDD GRH+T+AW+FVSS+  HDFDFH +A+  I+ YY TG G+AATA      G  VP V I+TDGCA QYKGK NF  +A     L GV ++HNFA TSHFKG HDG+GG+ K ++R AE      +RIHN +AA +FL+     K  ED    F+SWSPYRI++ H+  +    I RP ++L GI G+  LYQF G
Sbjct:  303 ATFGKGELLVETDFIEKYKHEAGAVLTCATAPSTTMMVALVHHSPDDDGRHETDAWVFVSSDPNHDFDFHIYAMDIILRYYITGDGRAATA------GTPVPTVHIFTDGCAKQYKGKHNFYAVAKSLHRL-GVVLIHNFAVTSHFKGAHDGIGGLLKALLREAEKR---GQRIHNTQAAADFLQVYAEAK--EDGGGHFSSWSPYRIKRFHIKLLGHREIPRPFVDLTGISGSSKLYQFMG 532
[Close]
BLAST of mRNA_C-linearis_contig10.588.1 vs. uniprot
Match: A0A6H5K6N6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N6_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 3.550e-67
Identity = 124/242 (51.24%), Postives = 159/242 (65.70%), Query Frame = 1 
Query: 2107 ARCGRATFLIETDFIEKYKCQAGSTGTCETTPSVTLMVAIVHHSPDDFGRHKTEAWIFVSSEKKHDFDFHAHALRQIVEYYTTGGGKAATAPPAGFVGVFVPLVCIWTDGCAHQYKGKKNFRLIANCREELCGVKIVHNFAATSHFKGPHDGLGGVAKNMMRRAELNTDYARRIHNAKAAYEFLEEKMGRKTHEDSEAFFASWSPYRIRKTHVIWIPFGAIRRPEINLDGIVGTRSLYQFHG 2832
            A  G+   L+ETDFIEKYK +AG+  TC T PS T+MVA+VHHSPDD GRH+T+AW+FVSS+  HDFDFH +A+  I+ YY TG G+A TA      G  VP V I+TDGCA QYKGK+NF  +A     L GV ++HNFA TSHFK   DG+GG+ K + R  E   +  +RI N +AA +FL+     K  ED    F+SWSPYRI++ H+  +    I RP ++L GI G+  LYQF G
Sbjct:   51 ATFGKGELLVETDFIEKYKHEAGAVLTCATAPSTTMMVALVHHSPDDDGRHETDAWVFVSSDPNHDFDFHIYAMDIILRYYITGDGRADTA------GTPVPTVHIFTDGCAKQYKGKRNFYAVAKSLHRL-GVVLIHNFAVTSHFKSADDGIGGLLKALSRETE---ERGQRIRNTQAAADFLQVYAEAK--EDGGGHFSSWSPYRIKRFHIKLLGHREIPRPFVDLTGISGSSKLYQFMG 280
[Close]
BLAST of mRNA_C-linearis_contig10.588.1 vs. uniprot
Match: A0A6H5KY26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY26_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 1.810e-66
Identity = 124/240 (51.67%), Postives = 160/240 (66.67%), Query Frame = 1 
Query: 2107 ARCGRATFLIETDFIEKYKCQAGSTGTCETTPSVTLMVAIVHHSPDDFGRHKTEAWIFVSSEKKHDFDFHAHALRQIVEYYTTGGGKAATAPPAGFVGVFVPLVCIWTDGCAHQYKGKKNFRLIANCREELCGVKIVHNFAATSHFKGPHDGLGGVAKNMMRRAELNTDYARRIHNAKAAYEFLEEKMGRKTHEDSEAFFASWSPYRIRKTHVIWIPFGAIRRPEINLDGIVGTRSLYQF 2826
            A   +   L+ETDFIEKYK +AG+  TC T PS T+MVA+VHHSPDD GRH+T+ W+ VSS+  HDFDFH +A+  I+ YY TG G+AATA      G  VP V I+TDGCA QYKGK+NF  +A     L GV ++HNFA TSHFKG HDG+GG+ K ++R AE      +RIH+ +AA +FL  K   +  ED    F++WSPYRIR+ H+  +    I RP ++L GI G+  LYQF
Sbjct:  281 ATFSKGELLVETDFIEKYKHEAGAILTCATAPSTTMMVALVHHSPDDDGRHETDTWVVVSSDPNHDFDFHIYAMDIILRYYITGDGRAATA------GTPVPTVHIFTDGCAKQYKGKRNFHAVAKSLHRL-GVVLIHNFAVTSHFKGAHDGIGGLLKALLREAEKR---GQRIHDTEAAADFL--KAYAEAKEDGGGHFSTWSPYRIRRFHIKLLGHREIPRPFVDLMGISGSSKLYQF 508
[Close]
BLAST of mRNA_C-linearis_contig10.588.1 vs. uniprot
Match: A0A6H5KDQ3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDQ3_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 3.150e-63
Identity = 130/300 (43.33%), Postives = 177/300 (59.00%), Query Frame = 2 
Query:  965 LGKVEEDAKVHAATIMEIIASLASLRENTQFELGRMVYQAVLSVVA---GTGGRSFGVTAERRAESLNIRPNTFRDAQARMCNARHDLPPQTALDKGVYVYNRRKIRSDITLPEILALARQFWHTDDVSRASGNSGDRDMWRESKAWDAPGHPRRQINIEGGGDEVYRRFLEWPEYLAFKAE-RAARGEVVQDPGRTVFLETRCPCLVMPKIQQCACQIHTQQQLYLTALKMYLKAMHPGGCKCECAWCKI--GCSQWVHMCENLGNFSQYLACDKVDLLGGDAEGTGVYMGRKPACAAF 1846
            L K + DA+     +     +LA+     +   GR  +Q +L+  A     G     VT++R+AE L + P  F  A  R+   R DL P+ AL +G Y +  R  RSD T PE+L L ++FWHTD VSRASGNS +RDMWR SK      H RRQ++++GGG+  + +F EWP+Y+ FK   ++ +GE ++DPGR++FL TRC CL   K  QCAC+IHTQQ LYL AL+   +    G   C+C WC    G + W  M E+LG FS+ L C KVDL  GD E    +MGRKPAC++ 
Sbjct:  178 LRKEQADARDARKMVAGTKKALAAASTQGRTNEGRRTFQTILTAAAFDGDDGDEPSRVTSKRKAELLGVHPEHFVSANKRVARLRSDLAPEEALGEGAYWFQPRGKRSDATPPEVLELMKRFWHTDVVSRASGNSSNRDMWRASKREGEVRHARRQLHVQGGGEAAFSKFFEWPDYINFKRIWKSEKGEDIKDPGRSLFLSTRCKCLTTLKTDQCACKIHTQQDLYLKALR---EVNVEGRATCDCRWCSAPDGHAAWKGMWEHLGTFSEALLCPKVDLREGDPEDEVGFMGRKPACSSM 474
[Close]
BLAST of mRNA_C-linearis_contig10.588.1 vs. uniprot
Match: A0A6H5KI39_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI39_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 2.700e-61
Identity = 107/213 (50.23%), Postives = 140/213 (65.73%), Query Frame = 2 
Query: 1211 HDLPPQTALDKGVYVYNRRKIRSDITLPEILALARQFWHTDDVSRASGNSGDRDMWRESKAWDAPGHPRRQINIEGGGDEVYRRFLEWPEYLAFKAERAARGEVVQDPGRTVFLETRCPCLVMPKIQQCACQIHTQQQLYLTALKMYLKAMHPGGCKCECAWCK-IGCSQWVHMCENLGNFSQYLACDKVDLLGGDAEGTGVYMGRKPACAAF 1846
            H +PP+ AL+KG Y++  RK R+D     ++ LAR+FWH+DD+SRASG+SG   +WR SK      HPRRQ+ +   GD+V+R+FL+WPEYL  KAE         DPGRT+FL TRC CLV PK+ QCACQIHTQQ LY  A +M + A+H   C+C C WC   GC +W+ MC++L +FS+ LAC+K   L     G   + GRKPAC A 
Sbjct:    6 HTIPPKDALEKGRYLWAPRKERTDKMDERVMDLARRFWHSDDISRASGDSGTEAVWRPSKKAGEEYHPRRQLMV--AGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTMFLSTRCGCLVEPKVSQCACQIHTQQGLYHKAFEMLMPAIH-ANCECTCNWCDGSGCGKWMAMCKDLHSFSEALACEKAGFLAEGRGGRFEHWGRKPACVAM 215
[Close]
BLAST of mRNA_C-linearis_contig10.588.1 vs. uniprot
Match: A0A6H5JKB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKB9_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 4.600e-60
Identity = 110/205 (53.66%), Postives = 139/205 (67.80%), Query Frame = 1 
Query: 2107 ARCGRATFLIETDFIEKYKCQAGSTGTCETTPSVTLMVAIVHHSPDDFGRHKTEAWIFVSSEKKHDFDFHAHALRQIVEYYTTGGGKAATAPPAGFVGVFVPLVCIWTDGCAHQYKGKKNFRLIANCREELCGVKIVHNFAATSHFKGPHDGLGGVAKNMMRRAELNTDYARRIHNAKAAYEFLEEKMGRKTHEDSEAFFASWSP 2721
            A  G+   L+ETDFIEKYK +AG+  TC T PS T+MVA+VHHSPDD GRH+T+AW+FVSS+  HDFDFH +A+  I+ YY TG G+A TA      G  VP V I+TDGCA QYKGK+NF  +A     L G  ++HNFA TSHFKG HDG+GG+ K ++R AE      +RIHN +AA +FL+     K  ED    F+SW+P
Sbjct:   51 ATFGKGELLVETDFIEKYKHEAGAVLTCATAPSTTMMVALVHHSPDDDGRHETDAWVFVSSDPNHDFDFHIYAMDIILRYYITGDGRADTA------GTPVPTVHIFTDGCAKQYKGKRNFYAVAKSLHRL-GAVLIHNFAVTSHFKGAHDGIGGLLKALLREAEKR---GQRIHNTQAAADFLQVYAEAK--EDGGGHFSSWTP 243
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JF90_9PHAE7.120e-8049.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7E6_9PHAE2.780e-7649.35Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT99_9PHAE9.060e-7143.89Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWW3_9PHAE3.980e-6943.89MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5K491_9PHAE1.160e-6853.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6N6_9PHAE3.550e-6751.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY26_9PHAE1.810e-6651.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDQ3_9PHAE3.150e-6343.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KI39_9PHAE2.700e-6150.23Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKB9_9PHAE4.600e-6053.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2713207..2717195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size2939
Cds size1818
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927343.8676832-UTR-C-linearis_contig10:2713206..27140111622927343.8676832-UTR-C-linearis_contig10:2713206..2714011Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2713207..2714011 -
1690879640.192349-UTR-C-linearis_contig10:2713206..27140111690879640.192349-UTR-C-linearis_contig10:2713206..2714011Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2713207..2714011 -
1622927343.927336-UTR-C-linearis_contig10:2716879..27171951622927343.927336-UTR-C-linearis_contig10:2716879..2717195Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2716880..2717195 -
1690879640.2722507-UTR-C-linearis_contig10:2716879..27171951690879640.2722507-UTR-C-linearis_contig10:2716879..2717195Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2716880..2717195 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927343.8769443-CDS-C-linearis_contig10:2714011..27140971622927343.8769443-CDS-C-linearis_contig10:2714011..2714097Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2714012..2714097 -
1690879640.2014601-CDS-C-linearis_contig10:2714011..27140971690879640.2014601-CDS-C-linearis_contig10:2714011..2714097Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2714012..2714097 -
1622927343.8857486-CDS-C-linearis_contig10:2714333..27148071622927343.8857486-CDS-C-linearis_contig10:2714333..2714807Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2714334..2714807 -
1690879640.2107453-CDS-C-linearis_contig10:2714333..27148071690879640.2107453-CDS-C-linearis_contig10:2714333..2714807Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2714334..2714807 -
1622927343.8968453-CDS-C-linearis_contig10:2715052..27152651622927343.8968453-CDS-C-linearis_contig10:2715052..2715265Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2715053..2715265 -
1690879640.2266583-CDS-C-linearis_contig10:2715052..27152651690879640.2266583-CDS-C-linearis_contig10:2715052..2715265Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2715053..2715265 -
1622927343.9074557-CDS-C-linearis_contig10:2715427..27160731622927343.9074557-CDS-C-linearis_contig10:2715427..2716073Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2715428..2716073 -
1690879640.2456784-CDS-C-linearis_contig10:2715427..27160731690879640.2456784-CDS-C-linearis_contig10:2715427..2716073Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2715428..2716073 -
1622927343.9177663-CDS-C-linearis_contig10:2716480..27168791622927343.9177663-CDS-C-linearis_contig10:2716480..2716879Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2716481..2716879 -
1690879640.2638054-CDS-C-linearis_contig10:2716480..27168791690879640.2638054-CDS-C-linearis_contig10:2716480..2716879Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2716481..2716879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.588.1prot_C-linearis_contig10.588.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2714012..2716879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.588.1

>prot_C-linearis_contig10.588.1 ID=prot_C-linearis_contig10.588.1|Name=mRNA_C-linearis_contig10.588.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=606bp
MDLASSGAEIAQLPGKTERFIVIQQGRRTVRHSWKRQREKVLVTSALLRV
DGRECGGLIRSSIANDLATLSSTCDAHATVIQDRADQKSHSRAAGAAPAS
AAGRKRGRLEVSGSSAVLEAASPLPPRRGRQAQSGLAGSARSARSTVSLR
QADSSSEGAAPSGGTGAAAGGALTAADIQSALDANPALLGELGLVQARSD
SEMAAAAAEVVELKAKLGKVEEDAKVHAATIMEIIASLASLRENTQFELG
RMVYQAVLSVVAGTGGRSFGVTAERRAESLNIRPNTFRDAQARMCNARHD
LPPQTALDKGVYVYNRRKIRSDITLPEILALARQFWHTDDVSRASGNSGD
RDMWRESKAWDAPGHPRRQINIEGGGDEVYRRFLEWPEYLAFKAERAARG
EVVQDPGRTVFLETRCPCLVMPKIQQCACQIHTQQQLYLTALKMYLKAMH
PGGCKCECAWCKIGCSQWVHMCENLGNFSQYLACDKVDLLGGDAEGTGVY
MGRKPACAAFWRAQVVGSTTTAASPSALLGTSGDACGGVDTVRRHDPGER
DGGEEAAGAGAGHIERAVDRVPGAHEKVHGPPRHRQVAAQLPQAQFGRVA
AGRPF*
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mRNA from alignment at C-linearis_contig10:2713207..2717195-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.588.1 ID=mRNA_C-linearis_contig10.588.1|Name=mRNA_C-linearis_contig10.588.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3989bp|location=Sequence derived from alignment at C-linearis_contig10:2713207..2717195- (Chordaria linearis ClinC8C monoicous)
TTCCGGGGTCGTCCGACGGTAGAAATCGCGATTTTTTTGTTTTCGATTTG
CGGGTGCAATTTTTAGCCGATTTCAAATCTGAAACCTACTATGTTCAGCA
TGTACCGAGATCTATCAGATCACCAAAGATCAAATCGTGATTCCAATTCC
TTCATGCCGAACCCGCGTACCCCCAAAACGCGGCGAGATCAAAATGAGCA
TAATCCACCTCGAATCACACTTCGATCCTTGCGCCACGCGATCCGGCGTG
GCTGATTTACTGGGGTAGAACACAACTTTGTCGCGATCGGACACGAACTC
CACCTGCGGCGGGGCCATGGATTTAGCCTCTTCTGGCGCCGAAATCGCTC
AACTTCCCGGGAAGACGGAGAGATTCATCGTGATCCAGCAGGGCCGCCGT
ACAGTGCGACACTCGTGGAAGCGGCAACGCGAGAAGGTGCTGGTGACGTC
TGCACTGCTGAGGGTAGATGGCAGGGAGTGCGGTGGCCTCATCCGCTCGT
CTATCGCCAACGATTTGGCGACGCTTTCCAGCACATGCGATGCGCATGCT
ACCGTGATACAGGACCGTGCGGACCAGAAATCCCACTCGAGGGCTGCCGG
TGCGGCTCCTGCTTCTGCCGCTGGCCGCAAGCGAGGGAGACTCGAGGTCA
GCGGTTCTAGCGCTGTTCTCGAGGCTGCTTCTCCACTACCGCCGAGAAGA
GGCCGGCAAGCGCAGGTATGTCGTGTGTTGGTAGCTCGTTGTGCAGCCGC
AGTGAACTGCAGCGCGGTATATTTTTGTAATTGTTCTTGATCGCGCCGAC
CTCGTGTACTCCACTACAGGCAGCAGTCTATGTACAGCAATCATGCTGTT
GCGTACTGAACGTGTGCCAACAAGTGTGTTCCTCTGGCGGGGATGCGTGC
AGTGCTGTTGCTACTGCTGCGTCCTTCCCGTCGGCCAGCTGGGCTCATGA
TAATTGCACAAAATGGATGCATCGTGATGGAGTGTAAAATCGTAGAATCG
GAGCTGAGTTCTTACCGCATGAACCCACTGTTGAACACACAGCACAATAC
ACACAGCAAAACACGTCATTTGATCCGTGTCCCTGCTCTCGACTTACCCC
CGTCCCGATCAATCATCAGCAGAGCGGACTAGCTGGCAGCGCCAGGTCTG
CGAGATCTACGGTTTCTCTGCGTCAAGCGGACAGCAGCAGCGAGGGAGCG
GCGCCGAGCGGAGGTACCGGCGCCGCGGCGGGAGGGGCGCTCACGGCAGC
TGATATCCAATCTGCGCTTGATGCGAACCCAGCCCTGCTGGGGGAGTTGG
GGTTGGTGCAGGCCAGAAGCGATTCGGAGATGGCGGCGGCTGCTGCTGAG
GTGGTGGAGTTAAAAGCGAAGTTGGGCAAGGTGGAGGAGGACGCCAAGGT
GCACGCTGCGACGATCATGGAGATCATCGCGTCGCTCGCATCGTTGCGAG
AGAACACGCAGTTCGAGCTTGGCCGCATGGTGTACCAAGCCGTGCTCTCT
GTGGTAGCGGGGACGGGGGGTCGGTCATTCGGTGTAACTGCCGAAAGGCG
GGCAGAGAGCCTCAACATTCGTCCGAACACCTTTCGTGACGCGCAAGCAC
GGATGTGCAACGCGCGGCATGACCTACCCCCACAGACGGCTCTCGATAAA
GGCGTGTACGTGTACAACCGGAGGAAGATCAGGAGCGACATCACGCTCCC
GGAGATTCTGGCCCTCGCACGCCAGTTTTGGCACACAGACGACGTCTCTC
GTGCTTCCGGCAACTCAGGTATATTGCACAACAAAAAAAAATGCCAGCGG
TGCAACCAACTTGTTGCTTTCGAGTACATAGTCCGTCACGCAATCAAGTT
GTTTTCGTTTGACCTGTTGGGGAGCCTAAAACTTTACGGCGCCACACCCT
CTCGCTACCTTCGAACGTACGAATCAACAGGTGACAGGGACATGTGGAGG
GAATCCAAGGCATGGGACGCTCCTGGTCACCCTCGAAGACAGATCAACAT
CGAGGGTGGTGGAGACGAGGTCTACAGGCGATTCCTCGAGTGGCCCGAGT
ACCTGGCCTTCAAGGCAGAGCGCGCAGCAAGAGGGGAAGTCGTGCAAGAT
CCCGGCCGCACCGTGTTCTTGGAGACTCGGTGCCCGTGCCTAGGTATGGA
AGTTCCGTTCGAGTAAGCCCTTTGTTTCTGTTGCTTGTGCTGGTTCAGAC
GGGCGCTCTTCTTGCACTGCTAGCAATCGTTTTGGGCTTCGTCGGTCTAA
TATTTGTTCTCGAAAAGATCTCCGTTCCGCTTCGCTCCACTCCGTTTTTT
TTTGAAATGTAAACTTATGCAAAGACCACCTTTGTATTTAAGAAGTGACA
CAGGTCCTTTTGCGCCTCCTCTCCTTTGTCGTCCCCAGTGATGCCCAAAA
TCCAGCAGTGCGCGTGCCAGATACACACCCAGCAGCAGCTGTACCTCACA
GCACTGAAGATGTACTTGAAGGCGATGCACCCGGGAGGGTGCAAGTGCGA
GTGTGCCTGGTGTAAGATCGGTTGCTCGCAGTGGGTGCACATGTGCGAGA
ACCTGGGGAATTTTTCGCAGTACTTAGCATGTGATAAGGTAGACTTACTT
GGTGGGGATGCGGAGGGCACGGGCGTGTACATGGGGAGGAAGCCTGCGTG
CGCAGCTTTTTGGCGTGCGCAAGTTGTGGGTTCGACAACGACGGCGGCAT
CCCCAAGTGCTCTGCTTGGGACGAGTGGGGACGCGTGCGGTGGGGTGGAT
ACGGTTCGAAGACATGACCCTGGAGAGCGGGACGGAGGTGAAGAAGCAGC
AGGTGCCGGTGCAGGGCACATTGAACGAGCTGTGGACAGAGTTCCGGGCG
CACACGAAAAAGGCGAGCTCTTGTTTGTGGCCCAGCGGATAACTTCTTCT
TTTTCTGTCGTTGCATGTTGAACATTCAATGGCAGCAGCAGATTCGCACG
GTTGGCCTTCCTCCGGGTCGCAGCACTTGTTTCTTTCTCGCGAACCTTTT
TGTTTGTTTTGTCTGCGAAAGAACATGTCACCACCTGACTTTCTGGCATG
CCGTCTCGCCTCCTGTCTCCCGCTCTTTTTCTTGTGTGGTATTGTCAGTA
CATGGCCCACCACGCCATCGCCAAGTGGCAGCGCAACTCCCACAAGCTCA
GTTTGGGCGCGTTGCGGCAGGGCGACCTTTTTGATCGAGACGGACTTCAT
CGAGAAGTACAAGTGCCAAGCGGGGTCCACGGGGACTTGCGAGACTACAC
CGTCCGTCACCCTCATGGTGGCGATCGTGCACCACAGCCCCGACGACTTC
GGCCGACACAAGACCGAGGCCTGGATTTTCGTTTCGAGCGAGAAGAAGCA
CGACTTCGACTTCCATGCGCACGCCCTCAGGCAGATAGTGGAGTACTACA
CTACAGGGGGTGGCAAGGCAGCAACTGCCCCTCCGGCAGGCTTTGTTGGA
GTATTCGTTCCTCTGGTCTGCATATGGACGGATGGATGTGCGCATCAGTA
CAAAGGCAAGAAGAATTTCCGGCTCATCGCGAACTGCAGAGAAGAGCTTT
GTGGGGTCAAGATCGTGCACAACTTCGCTGCGACGTCACACTTCAAAGGC
CCGCATGACGGACTTGGCGGCGTGGCGAAAAACATGATGCGTCGGGCGGA
GCTCAACACAGACTACGCCCGGCGCATTCACAACGCGAAGGCTGCGTACG
AGTTCCTGGAGGAGAAGATGGGACGGAAAACGCATGAAGACTCGGAGGCC
TTCTTCGCGTCGTGGTCTCCGTACAGGATCAGGAAGACGCACGTCATCTG
GATTCCGTTTGGGGCGATTCGCCGCCCGGAGATCAACCTGGATGGCATCG
TCGGCACCCGCTCCCTGTACCAGTTCCACGGAGGCCTGAAGACCAACCGT
GACGCAGCCGCTCAGTTGGACGATGGGGGTGCGATAACGGCGACTACCGC
AGCAGTGGTACCAGAGACGAGGGGTCTAATCGTGGGGGG
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Coding sequence (CDS) from alignment at C-linearis_contig10:2713207..2717195-

>mRNA_C-linearis_contig10.588.1 ID=mRNA_C-linearis_contig10.588.1|Name=mRNA_C-linearis_contig10.588.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3636bp|location=Sequence derived from alignment at C-linearis_contig10:2713207..2717195- (Chordaria linearis ClinC8C monoicous)
ATGGATTTAGCCTCTTCTGGCGCCGAAATCGCTCAACTTCCCGGGAAGAC
GGAGAGATTCATCGTGATCCAGCAGGGCCGCCGTACAGTGCGACACTCGT
GGAAGCGGCAACGCGAGAAGGTGCTGGTGACGTCTGCACTGCTGAGGGTA
GATGGCAGGGAGTGCGGTGGCCTCATCCGCTCGTCTATCGCCAACGATTT
GGCGACGCTTTCCAGCACATGCGATGCGCATGCTACCGTGATACAGGACC
GTGCGGACCAGAAATCCCACTCGAGGGCTGCCGGTGCGGCTCCTGCTTCT
GCCGCTGGCCGCAAGCGAGGGAGACTCGAGGTCAGCGGTTCTAGCGCTGT
TCTCGAGGCTGCTTCTCCACTACCGCCGAGAAGAGGCCGGCAAGCGCAGA
TGGATTTAGCCTCTTCTGGCGCCGAAATCGCTCAACTTCCCGGGAAGACG
GAGAGATTCATCGTGATCCAGCAGGGCCGCCGTACAGTGCGACACTCGTG
GAAGCGGCAACGCGAGAAGGTGCTGGTGACGTCTGCACTGCTGAGGGTAG
ATGGCAGGGAGTGCGGTGGCCTCATCCGCTCGTCTATCGCCAACGATTTG
GCGACGCTTTCCAGCACATGCGATGCGCATGCTACCGTGATACAGGACCG
TGCGGACCAGAAATCCCACTCGAGGGCTGCCGGTGCGGCTCCTGCTTCTG
CCGCTGGCCGCAAGCGAGGGAGACTCGAGGTCAGCGGTTCTAGCGCTGTT
CTCGAGGCTGCTTCTCCACTACCGCCGAGAAGAGGCCGGCAAGCGCAGAG
CGGACTAGCTGGCAGCGCCAGGTCTGCGAGATCTACGGTTTCTCTGCGTC
AAGCGGACAGCAGCAGCGAGGGAGCGGCGCCGAGCGGAGGTACCGGCGCC
GCGGCGGGAGGGGCGCTCACGGCAGCTGATATCCAATCTGCGCTTGATGC
GAACCCAGCCCTGCTGGGGGAGTTGGGGTTGGTGCAGGCCAGAAGCGATT
CGGAGATGGCGGCGGCTGCTGCTGAGGTGGTGGAGTTAAAAGCGAAGTTG
GGCAAGGTGGAGGAGGACGCCAAGGTGCACGCTGCGACGATCATGGAGAT
CATCGCGTCGCTCGCATCGTTGCGAGAGAACACGCAGTTCGAGCTTGGCC
GCATGGTGTACCAAGCCGTGCTCTCTGTGGTAGCGGGGACGGGGGGTCGG
TCATTCGGTGTAACTGCCGAAAGGCGGGCAGAGAGCCTCAACATTCGTCC
GAACACCTTTCGTGACGCGCAAGCACGGATGTGCAACGCGCGGCATGACC
TACCCCCACAGACGGCTCTCGATAAAGGCGTGTACGTGTACAACCGGAGG
AAGATCAGGAGCGACATCACGCTCCCGGAGATTCTGGCCCTCGCACGCCA
GTTTTGGCACACAGACGACGTCTCTCGTGCTTCCGGCAACTCAGAGCGGA
CTAGCTGGCAGCGCCAGGTCTGCGAGATCTACGGTTTCTCTGCGTCAAGC
GGACAGCAGCAGCGAGGGAGCGGCGCCGAGCGGAGGTACCGGCGCCGCGG
CGGGAGGGGCGCTCACGGCAGCTGATATCCAATCTGCGCTTGATGCGAAC
CCAGCCCTGCTGGGGGAGTTGGGGTTGGTGCAGGCCAGAAGCGATTCGGA
GATGGCGGCGGCTGCTGCTGAGGTGGTGGAGTTAAAAGCGAAGTTGGGCA
AGGTGGAGGAGGACGCCAAGGTGCACGCTGCGACGATCATGGAGATCATC
GCGTCGCTCGCATCGTTGCGAGAGAACACGCAGTTCGAGCTTGGCCGCAT
GGTGTACCAAGCCGTGCTCTCTGTGGTAGCGGGGACGGGGGGTCGGTCAT
TCGGTGTAACTGCCGAAAGGCGGGCAGAGAGCCTCAACATTCGTCCGAAC
ACCTTTCGTGACGCGCAAGCACGGATGTGCAACGCGCGGCATGACCTACC
CCCACAGACGGCTCTCGATAAAGGCGTGTACGTGTACAACCGGAGGAAGA
TCAGGAGCGACATCACGCTCCCGGAGATTCTGGCCCTCGCACGCCAGTTT
TGGCACACAGACGACGTCTCTCGTGCTTCCGGCAACTCAGGTGACAGGGA
CATGTGGAGGGAATCCAAGGCATGGGACGCTCCTGGTCACCCTCGAAGAC
AGATCAACATCGAGGGTGGTGGAGACGAGGTCTACAGGCGATTCCTCGAG
TGGCCCGAGTACCTGGCCTTCAAGGCAGAGCGCGCAGCAAGAGGGGAAGT
CGTGCAAGATCCCGGCCGCACCGTGTTCTTGGAGACTCGGTGCCCGTGCC
TAGGTGACAGGGACATGTGGAGGGAATCCAAGGCATGGGACGCTCCTGGT
CACCCTCGAAGACAGATCAACATCGAGGGTGGTGGAGACGAGGTCTACAG
GCGATTCCTCGAGTGGCCCGAGTACCTGGCCTTCAAGGCAGAGCGCGCAG
CAAGAGGGGAAGTCGTGCAAGATCCCGGCCGCACCGTGTTCTTGGAGACT
CGGTGCCCGTGCCTAGTGATGCCCAAAATCCAGCAGTGCGCGTGCCAGAT
ACACACCCAGCAGCAGCTGTACCTCACAGCACTGAAGATGTACTTGAAGG
CGATGCACCCGGGAGGGTGCAAGTGCGAGTGTGCCTGGTGTAAGATCGGT
TGCTCGCAGTGGGTGCACATGTGCGAGAACCTGGGGAATTTTTCGCAGTA
CTTAGCATGTGATAAGGTAGACTTACTTGGTGGGGATGCGGAGGGCACGG
GCGTGTACATGGGGAGGAAGCCTGCGTGCGCAGCTTTTTGGCGTGCGCAA
GTTGTGGGTTCGACAACGACGGCGGCATCCCCAAGTGCTCTGCTTGGGAC
GAGTGGGGACGCGTGCGGTGGGGTGGATACGGTTCGAAGACATGACCCTG
GAGAGCGGGACGGAGGTGAAGAAGCAGCAGGTGCCGGTGCAGGGCACATT
GAACGAGCTGTGGACAGAGTTCCGGGCGCACACGAAAAAGTGATGCCCAA
AATCCAGCAGTGCGCGTGCCAGATACACACCCAGCAGCAGCTGTACCTCA
CAGCACTGAAGATGTACTTGAAGGCGATGCACCCGGGAGGGTGCAAGTGC
GAGTGTGCCTGGTGTAAGATCGGTTGCTCGCAGTGGGTGCACATGTGCGA
GAACCTGGGGAATTTTTCGCAGTACTTAGCATGTGATAAGGTAGACTTAC
TTGGTGGGGATGCGGAGGGCACGGGCGTGTACATGGGGAGGAAGCCTGCG
TGCGCAGCTTTTTGGCGTGCGCAAGTTGTGGGTTCGACAACGACGGCGGC
ATCCCCAAGTGCTCTGCTTGGGACGAGTGGGGACGCGTGCGGTGGGGTGG
ATACGGTTCGAAGACATGACCCTGGAGAGCGGGACGGAGGTGAAGAAGCA
GCAGGTGCCGGTGCAGGGCACATTGAACGAGCTGTGGACAGAGTTCCGGG
CGCACACGAAAAAGTACATGGCCCACCACGCCATCGCCAAGTGGCAGCGC
AACTCCCACAAGCTCAGTTTGGGCGCGTTGCGGCAGGGCGACCTTTTTGA
TACATGGCCCACCACGCCATCGCCAAGTGGCAGCGCAACTCCCACAAGCT
CAGTTTGGGCGCGTTGCGGCAGGGCGACCTTTTTGA
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