mRNA_C-linearis_contig10.588.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.588.1 vs. uniprot
Match: A0A6H5JF90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF90_9PHAE) HSP 1 Score: 280 bits (715), Expect = 7.120e-80 Identity = 151/306 (49.35%), Postives = 189/306 (61.76%), Query Frame = 2 Query: 986 AKVHAATIMEIIASLASLRENTQFELGRMVYQAVLSVVAGTGGR------------------SFGVTAERRAESLNIRPNTFRDAQARMCNARHDLPPQTALDKGVYVYNRRKIRSDITLPEILALARQFWHTDDVSRASGNSGDRDMWRESKAWDAPGHPRRQINIEGGGDEVYRRFLEWPEYLAFKAERAARGEVVQDPGRTVFLETRCPCLVMPKIQQCACQIHTQQQLYLTALKMYLKAMHPGGCKCECAWCK-IGCSQWVHMCENLGNFSQYLACDKVDLLGGDAEGTGVYMGRKPACAAF 1846
A + AA + ASL +L+++ +G YQ L+V AG G S GV+ RA SL IR TF DA+ RM N HD+ P+ A +G YVYN RK RSD+T PE++ALAR FWH+DDVSRA+GNSG +DM++ESK DAP HPRRQ+ +G D V+R FLE YLA K+ + DPGRT FL TRC CLV P QCACQIHTQQ LYL AL + ++H C CEC WC +GC +W MC++L FS LAC+KV+LL GD++G + GRKPACAA
Sbjct: 167 AAIDAANTRALRASLQALKQHCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCKPVESGGVSLAERANSLGIRHETFSDARWRMHNTNHDIAPKIAASEGCYVYNERKTRSDVTNPEVMALARAFWHSDDVSRATGNSG-KDMYKESKKRDAPSHPRRQLMHKG--DSVWRMFLESRRYLALKSRLLEQDSNFTDPGRTTFLSTRCGCLVDPTASQCACQIHTQQTLYLEALSFLMGSIHQD-CDCECNWCDDLGCKRWSVMCQDLSKFSDALACEKVNLLEGDSDGGFEFWGRKPACAAM 468
BLAST of mRNA_C-linearis_contig10.588.1 vs. uniprot
Match: A0A6H5K7E6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E6_9PHAE) HSP 1 Score: 280 bits (715), Expect = 2.780e-76 Identity = 151/306 (49.35%), Postives = 189/306 (61.76%), Query Frame = 2 Query: 986 AKVHAATIMEIIASLASLRENTQFELGRMVYQAVLSVVAGTGGR------------------SFGVTAERRAESLNIRPNTFRDAQARMCNARHDLPPQTALDKGVYVYNRRKIRSDITLPEILALARQFWHTDDVSRASGNSGDRDMWRESKAWDAPGHPRRQINIEGGGDEVYRRFLEWPEYLAFKAERAARGEVVQDPGRTVFLETRCPCLVMPKIQQCACQIHTQQQLYLTALKMYLKAMHPGGCKCECAWCK-IGCSQWVHMCENLGNFSQYLACDKVDLLGGDAEGTGVYMGRKPACAAF 1846
A + AA + ASL +L+++ +G YQ L+V AG G S GV+ RA SL IR TF DA+ RM N HD+ P+ A +G YVYN RK RSD+T PE++ALAR FWH+DDVSRA+GNSG +DM++ESK DAP HPRRQ+ +G D V+R FLE YLA K+ + DPGRT FL TRC CLV P QCACQIHTQQ LYL AL + ++H C CEC WC +GC +W MC++L FS LAC+KV+LL GD++G + GRKPACAA
Sbjct: 167 AAIDAANTRALRASLQALKQHCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCKPVESGGVSLAERANSLGIRHETFSDARWRMHNTNHDIAPKIAASEGCYVYNERKTRSDVTNPEVMALARAFWHSDDVSRATGNSG-KDMYKESKKRDAPSHPRRQLMHKG--DSVWRMFLESRRYLALKSRLLEQDSNFTDPGRTTFLSTRCGCLVDPTASQCACQIHTQQTLYLEALSFLMGSIHQD-CDCECNWCDDLGCKRWSVMCQDLSKFSDALACEKVNLLEGDSDGGFEFWGRKPACAAM 468
BLAST of mRNA_C-linearis_contig10.588.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE) HSP 1 Score: 263 bits (672), Expect = 9.060e-71 Identity = 140/319 (43.89%), Postives = 189/319 (59.25%), Query Frame = 2 Query: 962 KLGKVEEDAKVHAATIME----IIASLASLRENTQFELGRMVYQAVLSVVAGT------------------GGRSFGVTAERRAESLNIRPNTFRDAQARMCNARHDLPPQTALDKGVYVYNRRKIRSDITLPEILALARQFWHTDDVSRASGNSGDRDMWRESKAWDAPGHPRRQINIEGGGDEVYRRFLEWPEYLAFKAERAARGEVVQDPGRTVFLETRCPCLVMPKIQQCACQIHTQQQLYLTALKMYLKAMHPGGCKCECAWCK--IGCSQWVHMCENLGNFSQYLACDKVDLLGGDAEGTGVYMGRKPACAAF 1846
++G++ E A AA E ++AS+ +L++++ +GR Y V++ AG V+ RA+SL +R TFR A+ RM H +PPQ AL+KG Y++ RK RSD ++ LAR+FWH+DD+SRASG+SG + MWR SK HPRRQ+ + GD+V+ +FL+WPEYL KAE DPGRT+FL TRC CLV PK+ QCACQIHTQQ LYL A +M + A+H C C C WC GC +W+ MC++L +FS+ LAC+KVD L D G + GRKPAC A
Sbjct: 166 RVGELGEAAATKAAVDAENTRALVASIEALKQHSHSNIGRTAYNTVIAAAAGAQHTCDPDDPXXXXXXXXXXXXHGAVSLTARAQSLGVRDATFRAARTRMHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMV--AGDQVWHKFLKWPEYLGLKAELLREDNSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAIH-ANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAM 481
BLAST of mRNA_C-linearis_contig10.588.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE) HSP 1 Score: 263 bits (672), Expect = 3.980e-69 Identity = 140/319 (43.89%), Postives = 189/319 (59.25%), Query Frame = 2 Query: 962 KLGKVEEDAKVHAATIME----IIASLASLRENTQFELGRMVYQAVLSVVAGT------------------GGRSFGVTAERRAESLNIRPNTFRDAQARMCNARHDLPPQTALDKGVYVYNRRKIRSDITLPEILALARQFWHTDDVSRASGNSGDRDMWRESKAWDAPGHPRRQINIEGGGDEVYRRFLEWPEYLAFKAERAARGEVVQDPGRTVFLETRCPCLVMPKIQQCACQIHTQQQLYLTALKMYLKAMHPGGCKCECAWCK--IGCSQWVHMCENLGNFSQYLACDKVDLLGGDAEGTGVYMGRKPACAAF 1846
++G++ E A AA E ++AS+ +L++++ +GR Y V++ AG V+ RA+SL +R TFR A+ RM H +PPQ AL+KG Y++ RK RSD ++ LAR+FWH+DD+SRASG+SG + MWR SK HPRRQ+ + GD+V+ +FL+WPEYL KAE DPGRT+FL TRC CLV PK+ QCACQIHTQQ LYL A +M + A+H C C C WC GC +W+ MC++L +FS+ LAC+KVD L D G + GRKPAC A
Sbjct: 790 RVGELGEAAATKAAVDAENTRALVASIEALKQHSHSNIGRTAYNTVIAAAAGAQHTCDPDDPXXXXXXXXXXXXHGAVSLTARAQSLGVRDATFRAARTRMHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMV--AGDQVWHKFLKWPEYLGLKAELLREDNSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAIH-ANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAM 1105
BLAST of mRNA_C-linearis_contig10.588.1 vs. uniprot
Match: A0A6H5K491_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K491_9PHAE) HSP 1 Score: 251 bits (640), Expect = 1.160e-68 Identity = 129/242 (53.31%), Postives = 163/242 (67.36%), Query Frame = 1 Query: 2107 ARCGRATFLIETDFIEKYKCQAGSTGTCETTPSVTLMVAIVHHSPDDFGRHKTEAWIFVSSEKKHDFDFHAHALRQIVEYYTTGGGKAATAPPAGFVGVFVPLVCIWTDGCAHQYKGKKNFRLIANCREELCGVKIVHNFAATSHFKGPHDGLGGVAKNMMRRAELNTDYARRIHNAKAAYEFLEEKMGRKTHEDSEAFFASWSPYRIRKTHVIWIPFGAIRRPEINLDGIVGTRSLYQFHG 2832
A G+ L+ETDFIEKYK +AG+ TC T PS T+MVA+VHHSPDD GRH+T+AW+FVSS+ HDFDFH +A+ I+ YY TG G+AATA G VP V I+TDGCA QYKGK NF +A L GV ++HNFA TSHFKG HDG+GG+ K ++R AE +RIHN +AA +FL+ K ED F+SWSPYRI++ H+ + I RP ++L GI G+ LYQF G
Sbjct: 303 ATFGKGELLVETDFIEKYKHEAGAVLTCATAPSTTMMVALVHHSPDDDGRHETDAWVFVSSDPNHDFDFHIYAMDIILRYYITGDGRAATA------GTPVPTVHIFTDGCAKQYKGKHNFYAVAKSLHRL-GVVLIHNFAVTSHFKGAHDGIGGLLKALLREAEKR---GQRIHNTQAAADFLQVYAEAK--EDGGGHFSSWSPYRIKRFHIKLLGHREIPRPFVDLTGISGSSKLYQFMG 532
BLAST of mRNA_C-linearis_contig10.588.1 vs. uniprot
Match: A0A6H5K6N6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N6_9PHAE) HSP 1 Score: 238 bits (608), Expect = 3.550e-67 Identity = 124/242 (51.24%), Postives = 159/242 (65.70%), Query Frame = 1 Query: 2107 ARCGRATFLIETDFIEKYKCQAGSTGTCETTPSVTLMVAIVHHSPDDFGRHKTEAWIFVSSEKKHDFDFHAHALRQIVEYYTTGGGKAATAPPAGFVGVFVPLVCIWTDGCAHQYKGKKNFRLIANCREELCGVKIVHNFAATSHFKGPHDGLGGVAKNMMRRAELNTDYARRIHNAKAAYEFLEEKMGRKTHEDSEAFFASWSPYRIRKTHVIWIPFGAIRRPEINLDGIVGTRSLYQFHG 2832
A G+ L+ETDFIEKYK +AG+ TC T PS T+MVA+VHHSPDD GRH+T+AW+FVSS+ HDFDFH +A+ I+ YY TG G+A TA G VP V I+TDGCA QYKGK+NF +A L GV ++HNFA TSHFK DG+GG+ K + R E + +RI N +AA +FL+ K ED F+SWSPYRI++ H+ + I RP ++L GI G+ LYQF G
Sbjct: 51 ATFGKGELLVETDFIEKYKHEAGAVLTCATAPSTTMMVALVHHSPDDDGRHETDAWVFVSSDPNHDFDFHIYAMDIILRYYITGDGRADTA------GTPVPTVHIFTDGCAKQYKGKRNFYAVAKSLHRL-GVVLIHNFAVTSHFKSADDGIGGLLKALSRETE---ERGQRIRNTQAAADFLQVYAEAK--EDGGGHFSSWSPYRIKRFHIKLLGHREIPRPFVDLTGISGSSKLYQFMG 280
BLAST of mRNA_C-linearis_contig10.588.1 vs. uniprot
Match: A0A6H5KY26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY26_9PHAE) HSP 1 Score: 243 bits (619), Expect = 1.810e-66 Identity = 124/240 (51.67%), Postives = 160/240 (66.67%), Query Frame = 1 Query: 2107 ARCGRATFLIETDFIEKYKCQAGSTGTCETTPSVTLMVAIVHHSPDDFGRHKTEAWIFVSSEKKHDFDFHAHALRQIVEYYTTGGGKAATAPPAGFVGVFVPLVCIWTDGCAHQYKGKKNFRLIANCREELCGVKIVHNFAATSHFKGPHDGLGGVAKNMMRRAELNTDYARRIHNAKAAYEFLEEKMGRKTHEDSEAFFASWSPYRIRKTHVIWIPFGAIRRPEINLDGIVGTRSLYQF 2826
A + L+ETDFIEKYK +AG+ TC T PS T+MVA+VHHSPDD GRH+T+ W+ VSS+ HDFDFH +A+ I+ YY TG G+AATA G VP V I+TDGCA QYKGK+NF +A L GV ++HNFA TSHFKG HDG+GG+ K ++R AE +RIH+ +AA +FL K + ED F++WSPYRIR+ H+ + I RP ++L GI G+ LYQF
Sbjct: 281 ATFSKGELLVETDFIEKYKHEAGAILTCATAPSTTMMVALVHHSPDDDGRHETDTWVVVSSDPNHDFDFHIYAMDIILRYYITGDGRAATA------GTPVPTVHIFTDGCAKQYKGKRNFHAVAKSLHRL-GVVLIHNFAVTSHFKGAHDGIGGLLKALLREAEKR---GQRIHDTEAAADFL--KAYAEAKEDGGGHFSTWSPYRIRRFHIKLLGHREIPRPFVDLMGISGSSKLYQF 508
BLAST of mRNA_C-linearis_contig10.588.1 vs. uniprot
Match: A0A6H5KDQ3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDQ3_9PHAE) HSP 1 Score: 242 bits (618), Expect = 3.150e-63 Identity = 130/300 (43.33%), Postives = 177/300 (59.00%), Query Frame = 2 Query: 965 LGKVEEDAKVHAATIMEIIASLASLRENTQFELGRMVYQAVLSVVA---GTGGRSFGVTAERRAESLNIRPNTFRDAQARMCNARHDLPPQTALDKGVYVYNRRKIRSDITLPEILALARQFWHTDDVSRASGNSGDRDMWRESKAWDAPGHPRRQINIEGGGDEVYRRFLEWPEYLAFKAE-RAARGEVVQDPGRTVFLETRCPCLVMPKIQQCACQIHTQQQLYLTALKMYLKAMHPGGCKCECAWCKI--GCSQWVHMCENLGNFSQYLACDKVDLLGGDAEGTGVYMGRKPACAAF 1846
L K + DA+ + +LA+ + GR +Q +L+ A G VT++R+AE L + P F A R+ R DL P+ AL +G Y + R RSD T PE+L L ++FWHTD VSRASGNS +RDMWR SK H RRQ++++GGG+ + +F EWP+Y+ FK ++ +GE ++DPGR++FL TRC CL K QCAC+IHTQQ LYL AL+ + G C+C WC G + W M E+LG FS+ L C KVDL GD E +MGRKPAC++
Sbjct: 178 LRKEQADARDARKMVAGTKKALAAASTQGRTNEGRRTFQTILTAAAFDGDDGDEPSRVTSKRKAELLGVHPEHFVSANKRVARLRSDLAPEEALGEGAYWFQPRGKRSDATPPEVLELMKRFWHTDVVSRASGNSSNRDMWRASKREGEVRHARRQLHVQGGGEAAFSKFFEWPDYINFKRIWKSEKGEDIKDPGRSLFLSTRCKCLTTLKTDQCACKIHTQQDLYLKALR---EVNVEGRATCDCRWCSAPDGHAAWKGMWEHLGTFSEALLCPKVDLREGDPEDEVGFMGRKPACSSM 474
BLAST of mRNA_C-linearis_contig10.588.1 vs. uniprot
Match: A0A6H5KI39_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI39_9PHAE) HSP 1 Score: 221 bits (562), Expect = 2.700e-61 Identity = 107/213 (50.23%), Postives = 140/213 (65.73%), Query Frame = 2 Query: 1211 HDLPPQTALDKGVYVYNRRKIRSDITLPEILALARQFWHTDDVSRASGNSGDRDMWRESKAWDAPGHPRRQINIEGGGDEVYRRFLEWPEYLAFKAERAARGEVVQDPGRTVFLETRCPCLVMPKIQQCACQIHTQQQLYLTALKMYLKAMHPGGCKCECAWCK-IGCSQWVHMCENLGNFSQYLACDKVDLLGGDAEGTGVYMGRKPACAAF 1846
H +PP+ AL+KG Y++ RK R+D ++ LAR+FWH+DD+SRASG+SG +WR SK HPRRQ+ + GD+V+R+FL+WPEYL KAE DPGRT+FL TRC CLV PK+ QCACQIHTQQ LY A +M + A+H C+C C WC GC +W+ MC++L +FS+ LAC+K L G + GRKPAC A
Sbjct: 6 HTIPPKDALEKGRYLWAPRKERTDKMDERVMDLARRFWHSDDISRASGDSGTEAVWRPSKKAGEEYHPRRQLMV--AGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTMFLSTRCGCLVEPKVSQCACQIHTQQGLYHKAFEMLMPAIH-ANCECTCNWCDGSGCGKWMAMCKDLHSFSEALACEKAGFLAEGRGGRFEHWGRKPACVAM 215
BLAST of mRNA_C-linearis_contig10.588.1 vs. uniprot
Match: A0A6H5JKB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKB9_9PHAE) HSP 1 Score: 216 bits (549), Expect = 4.600e-60 Identity = 110/205 (53.66%), Postives = 139/205 (67.80%), Query Frame = 1 Query: 2107 ARCGRATFLIETDFIEKYKCQAGSTGTCETTPSVTLMVAIVHHSPDDFGRHKTEAWIFVSSEKKHDFDFHAHALRQIVEYYTTGGGKAATAPPAGFVGVFVPLVCIWTDGCAHQYKGKKNFRLIANCREELCGVKIVHNFAATSHFKGPHDGLGGVAKNMMRRAELNTDYARRIHNAKAAYEFLEEKMGRKTHEDSEAFFASWSP 2721
A G+ L+ETDFIEKYK +AG+ TC T PS T+MVA+VHHSPDD GRH+T+AW+FVSS+ HDFDFH +A+ I+ YY TG G+A TA G VP V I+TDGCA QYKGK+NF +A L G ++HNFA TSHFKG HDG+GG+ K ++R AE +RIHN +AA +FL+ K ED F+SW+P
Sbjct: 51 ATFGKGELLVETDFIEKYKHEAGAVLTCATAPSTTMMVALVHHSPDDDGRHETDAWVFVSSDPNHDFDFHIYAMDIILRYYITGDGRADTA------GTPVPTVHIFTDGCAKQYKGKRNFYAVAKSLHRL-GAVLIHNFAVTSHFKGAHDGIGGLLKALLREAEKR---GQRIHNTQAAADFLQVYAEAK--EDGGGHFSSWTP 243 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.588.1 >prot_C-linearis_contig10.588.1 ID=prot_C-linearis_contig10.588.1|Name=mRNA_C-linearis_contig10.588.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=606bp MDLASSGAEIAQLPGKTERFIVIQQGRRTVRHSWKRQREKVLVTSALLRVback to top mRNA from alignment at C-linearis_contig10:2713207..2717195- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.588.1 ID=mRNA_C-linearis_contig10.588.1|Name=mRNA_C-linearis_contig10.588.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3989bp|location=Sequence derived from alignment at C-linearis_contig10:2713207..2717195- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2713207..2717195- >mRNA_C-linearis_contig10.588.1 ID=mRNA_C-linearis_contig10.588.1|Name=mRNA_C-linearis_contig10.588.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3636bp|location=Sequence derived from alignment at C-linearis_contig10:2713207..2717195- (Chordaria linearis ClinC8C monoicous)back to top |