Homology
BLAST of mRNA_C-linearis_contig10.534.1 vs. uniprot
Match:
D7FZW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW0_ECTSI)
HSP 1 Score: 166 bits (419), Expect = 6.950e-46
Identity = 88/111 (79.28%), Postives = 95/111 (85.59%), Query Frame = 1
Query: 10 GGSAKKRGRGGWKKDYTVIASVESKAGEAAA--AAAGWFVNGDARYACYEELPADMRPHVGDVLAFKTLSLNEETWTPELSSYRTAEVSAFDTASGMVRLFPVFLEDSDRE 336
GGSAKKRGRGGWKKDY VIASVESKAGEAAA AAAG NGDARY YEELP DMRP V DVLAFKTLSLNEETWTPELS YRTAEV+AFDT+SG+VRL P +ED +++
Sbjct: 131 GGSAKKRGRGGWKKDYEVIASVESKAGEAAAEAAAAGSVENGDARYVVYEELPTDMRPQVCDVLAFKTLSLNEETWTPELSPYRTAEVTAFDTSSGLVRLLPASIEDDNKD 241
BLAST of mRNA_C-linearis_contig10.534.1 vs. uniprot
Match:
A0A6H5L4H0_9PHAE (Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE)
HSP 1 Score: 157 bits (398), Expect = 9.500e-42
Identity = 86/114 (75.44%), Postives = 91/114 (79.82%), Query Frame = 1
Query: 10 GGSAKKRGRGGWKKDYTVIASVESKAGEAAA--AAAGWFVNGDARYACYEELPADMRPHVGDVLAFKTLSLNEETWTPELSSYRTAEVSAFDTASGMVRLFPVFLEDSDREANG 345
GGSAKKRGRGGWKKDY VIASVESKAGEAAA AAAG N DARY YEELP DMRP V DVLAFKTLSLNEETWTPELS YR AEV AFD +SG+VRL P ED +++ G
Sbjct: 592 GGSAKKRGRGGWKKDYEVIASVESKAGEAAAEAAAAGSVENADARYVGYEELPTDMRPQVRDVLAFKTLSLNEETWTPELSPYRMAEVIAFDASSGLVRLRPASTEDDNKDGGG 705
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.534.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 6.95e-46 / Id = 79.28 Expect = 9.50e-42 / Id = 75.44 Sequence D7FZW0_ECTSI A0A6H5L4H0_9PHAE
Match Name E-value Identity Description
D7FZW0_ECTSI 6.950e-46 79.28 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5L4H0_9PHAE 9.500e-42 75.44 Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description hypothetical protein Ec32 ortholog Ec-22_003890.1 Exons 3 Model size 465 Cds size 462 Stop 0 Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927338.9512005-CDS-C-linearis_contig10:2023140..2023338 1622927338.9512005-CDS-C-linearis_contig10:2023140..2023338 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 2023141..2023338 - 1690879636.2838168-CDS-C-linearis_contig10:2023140..2023338 1690879636.2838168-CDS-C-linearis_contig10:2023140..2023338 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 2023141..2023338 - 1622927338.9619472-CDS-C-linearis_contig10:2024212..2024339 1622927338.9619472-CDS-C-linearis_contig10:2024212..2024339 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 2024213..2024339 - 1690879636.2932203-CDS-C-linearis_contig10:2024212..2024339 1690879636.2932203-CDS-C-linearis_contig10:2024212..2024339 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 2024213..2024339 - 1622927338.9698553-CDS-C-linearis_contig10:2024795..2024932 1622927338.9698553-CDS-C-linearis_contig10:2024795..2024932 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 2024796..2024932 - 1690879636.3022532-CDS-C-linearis_contig10:2024795..2024932 1690879636.3022532-CDS-C-linearis_contig10:2024795..2024932 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 2024796..2024932 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.534.1
>prot_C-linearis_contig10.534.1 ID=prot_C-linearis_contig10.534.1|Name=mRNA_C-linearis_contig10.534.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=154bp
GDGGGSAKKRGRGGWKKDYTVIASVESKAGEAAAAAAGWFVNGDARYACY back to top mRNA from alignment at C-linearis_contig10:2023139..2024932-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.534.1 ID=mRNA_C-linearis_contig10.534.1|Name=mRNA_C-linearis_contig10.534.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1794bp|location=Sequence derived from alignment at C-linearis_contig10:2023139..2024932- (Chordaria linearis ClinC8C monoicous)GGGGATGGCGGTGGGAGCGCGAAGAAGAGGGGCCGGGGAGGGTGGAAGAA
AGACTACACTGTTATTGCGTCGGTGGAGAGCAAGGCCGGGGAGGCCGCGG
CGGCTGCCGCTGGGTGGTTTGTGAACGGCGATGCGCG GTGCGTTTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGCCGTTGTTGACGATGATGAGGCCCTT
GGGTCTGTTGCTGTTATTTAGTGCAGGGTTACGCTGTTGCTGTTTTTGCT
TCTGCTGCCGCCGCCGCTGTTTCTGCTGTCGTGGTTGGGGATAATGAGGC
TGTCGGTGCTCCTATCGTTGGGTGTGTTGGGTACTTGTGCGGTGTTGTTG
ACTTTAAAGCTATTCTAGTGTCAACCCGTCCGTATTCTTGCTTACTTTTT
GCTGGGTTTACGGACAATTATCATGTGCCCGCACAAAGGAGCCTCAATGA
AGAGGTTGAACCACCTCTCTCTCTCTCTCTCTCTCTCGTCGCCGTTTGAT
CGTGCCTCTTTTGACGTGCCTCCTCCTTCCCTTCTCCCGTCTTCTCTCGT
GGTGTCGTCGTTGATGTTGTGGCTGCTTCTGTCCTTGGGGCAGCTATGCC
TGCTACGAAGAGCTCCCCGCCGACATGCGCCCGCACGTAGGGGACGTGCT
CGCCTTCAAGACCCTGTCCCTCAACGAGGAGACGTGGACGCCCGAGCTCT
CCTCCTATCGGACAGCAGAG GTGCGGTACAAGTTTCAAGAGTGTGTTGAG
CGTTTTTGTTACTGTGCGTGTTTGACCTCCTGATTCGCGCTCGGTTTTCG
CTGGCTGTGCGCTGCGCCATATGCTGTGCTGTGCCCTGCTGTGCTGGTTC
CGTTGCCATGGCGCAGCGCCGCTTTTGTACGCCTTTTCGGACATGCCTGG
TCGTTTTTTGTTTTTCAGCGACAATTGGTAAACTTTTATTGATGGTTCGG
TGCACTGCTGTTGGGTGCAATATGTTGTCACCGGGGTTGCTGTTTGGCAG
TTGCACGTACATGCCCACCGTATGCGCATGGTTCGTTCTTTCTGTATTTT
CGTCTTGCTGTCTGCTGATTACGTTCCAGCCGAGCAGGTTGGTAAACGTG
GCCCTTGTAGAAATGTGCGGGACAGCAGCCTTTTGGTTTTGGTTTTGGTT
TTCACGTGGTGTGTTTAGCGTTTGCCTTGTTTTGCTACCGACCGCAGTGA
GCCCGTTTTCTACTTTTTGACGACAGCTCTAGAAAATGACCTAACTTTTG
TGACCAAGATCTCGTGCCCCGGAGGAACAAAACCCTTGATCGGGTTTCTG
CAGCCATCAAGAACGGCACACTTTCAAGTCCAACTGATGTTTGCGAACGC
ACGTTTCCAGATATCGGGGAACGGAATTTTGCTGTCTCAACGGAGTACCG
TGTTCTAGAACCATTCGCCGCGCCTGATAAGCCACATGCCCTATTTGCTC
GTGCCCCTCGAACAACATACAACCTCACCCGTAAGTCCTGAATAAACTTT
AACCTCCCCTCCCTCCATGTTTATCTGTACAATATCGCTCCCTTGTACCC
TCTCTGCCCCGCGTTGAACCGGCAACGTTATGCTGATCGTGCAGGTGTCC
GCCTTCGACACGGCTTCCGGCATGGTGCGTTTATTCCCGGTGTTCCTCGA
GGACAGCGACCGCGAAGCCAATGGCGGCGGCGGCGGCGATGGCGCTGCTG
CCGCAGGGCCCGGTCACCAGCAGCAAGACCGCCACCAGCAGGAAGAAGGA
GGTTTTACCAGCGCTGCGCCTAGCGCACACGCCGGGGAAGGG back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2023139..2024932-
>mRNA_C-linearis_contig10.534.1 ID=mRNA_C-linearis_contig10.534.1|Name=mRNA_C-linearis_contig10.534.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at C-linearis_contig10:2023139..2024932- (Chordaria linearis ClinC8C monoicous) back to top