mRNA_A-nodosum_M_contig884.18.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE) HSP 1 Score: 174 bits (440), Expect = 2.550e-48 Identity = 94/250 (37.60%), Postives = 148/250 (59.20%), Query Frame = 1
Query: 1 WKGALEREMNDQIDNGVWVQMKR-PKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE*AYLQADINEEIYIELPEDYRAFPNAVGLLRKAIYGLVQSGLWWFRTFTDGIKEKGFEQSHAEPCVFRRIVDGKVVTVIVIYVDDILLARKIKEDEGRTLSDLSSCFKIEDLGEAEFYLGCHITRNREARTLTLGQHIYTETVAKKFNVT 747
W+ A+++E++ G + ++K P+G+ + +K +F + + G I +K R V + F Q+ G +H SSS P+A+S++ ++A A K +L H DV+ AY+ A + EEIY+ PE + V + +A+YGL QSG W D + E G+EQ +PC+FR++VDG+VV +IVI VDDIL+A E E + L++ F ++DLGE +Y GC I + E TL Q E++ K+FNVT
Sbjct: 31 WETAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLILDFKARVVARGFSQIPGIDFHRSSSACPSAASLKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIEYGYEQCRVDPCIFRKVVDGEVVGLIVINVDDILVAADEGERED-LFASLNNRFPVKDLGECTWYDGCAIAMDVENGITTLSQTAKIESMLKRFNVT 279
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE) HSP 1 Score: 176 bits (447), Expect = 1.460e-47 Identity = 93/250 (37.20%), Postives = 148/250 (59.20%), Query Frame = 1
Query: 1 WKGALEREMNDQIDNGVWVQMKR-PKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE*AYLQADINEEIYIELPEDYRAFPNAVGLLRKAIYGLVQSGLWWFRTFTDGIKEKGFEQSHAEPCVFRRIVDGKVVTVIVIYVDDILLARKIKEDEGRTLSDLSSCFKIEDLGEAEFYLGCHITRNREARTLTLGQHIYTETVAKKFNVT 747
W+ A+++E++ G + ++K P+G+ + +K +F + + G I +K R V + F Q+ G +H SSS P+A+S++ ++A A K +L H DV+ AY+ A + EEIY+ PE + V + +A+YGL QSG W D + E G+EQ +PCVFR++VDG+VV +IVIYVDDI++A E E + L+ F ++D+GE +Y GC I + E L Q Y E++ K+F+VT
Sbjct: 228 WEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIVAADEGERE-ELFASLNKKFPVKDVGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVT 476
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 178 bits (451), Expect = 2.340e-47 Identity = 91/245 (37.14%), Postives = 151/245 (61.63%), Query Frame = 1
Query: 1 WKGALEREMNDQIDNGVWVQMKRPKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE*AYLQADINEEIYIELPEDYRAFPNAVGLLRKAIYGLVQSGLWWFRTFTDGIKEKGFEQSHAEPCVFRRIVDGKVVTVIVIYVDDILLARKIKEDEGRTLSDLSSCFKIEDLGEAEFYLGCHITRNREARTLTLGQHIYTETVAKK 735
W+ A E E+ GV+ ++ RP+ + ++ +K +FK + G DGQ+EKYK R V Q F QV+G Y+E+ +P ++S+R +LA AA +WE+ +DV+ A+L ++ EEIY+++P ++A +AV L+KA+YGL Q+ W++ + +K GF + A+ CVF + +D + +I +YVDD ++ + +T SDL S F + DLGE + L +TRNR+ RT+ L Q Y E + ++
Sbjct: 1010 WRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMD-RHPPIIAVYVDDNMVLSDSLDLVTKTKSDLGSRFDMTDLGEVCWILNMEVTRNRQERTIRLSQSQYIEDILER 1253
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A6H5JXE8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXE8_9PHAE) HSP 1 Score: 172 bits (435), Expect = 4.740e-47 Identity = 93/250 (37.20%), Postives = 144/250 (57.60%), Query Frame = 1
Query: 1 WKGALEREMNDQIDNGVWVQMKR-PKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE*AYLQADINEEIYIELPEDYRAFPNAVGLLRKAIYGLVQSGLWWFRTFTDGIKEKGFEQSHAEPCVFRRIVDGKVVTVIVIYVDDILLARKIKEDEGRTLSDLSSCFKIEDLGEAEFYLGCHITRNREARTLTLGQHIYTETVAKKFNVT 747
W+ A+E E++D G + ++K P+G+ + +K +F + + G I +K R V + F ++ G +H SSS P+A+S++ ++A A K +L H DV+ AY+ A + EEIY+ PE R V + +A+YG QSG W D + E G+EQ +PCVFR++VDG+VV +IVIYVDDIL+A E E + L+ ++DLGE +Y GC + E L Y E++ K+F+VT
Sbjct: 31 WEAAMENEIDDHDKPGTFSKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSRIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLEEEIYLRFPEGCRGMSGKVVKVERALYGPKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGERE-ELFASLNKKVPVKDLGECTWYDGCATAMDVENGIAKLSHTAYIESMLKRFDVT 279
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE) HSP 1 Score: 177 bits (448), Expect = 4.800e-47 Identity = 94/250 (37.60%), Postives = 147/250 (58.80%), Query Frame = 1
Query: 1 WKGALEREMNDQIDNGVWVQMKR-PKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE*AYLQADINEEIYIELPEDYRAFPNAVGLLRKAIYGLVQSGLWWFRTFTDGIKEKGFEQSHAEPCVFRRIVDGKVVTVIVIYVDDILLARKIKEDEGRTLSDLSSCFKIEDLGEAEFYLGCHITRNREARTLTLGQHIYTETVAKKFNVT 747
W+ A+++E++ G + ++K P+G+ + +K +F + + G I +K R V + F Q+ G +H SSS P+A+S++ ++A A K +L H DV+ AY+ A + EEIY+ PE + V + +A+YGL Q G W D + E G+EQ +PCVFR++VDG+VV +IVIYVDDIL+A E E + L+ F ++DLGE +Y GC I + E L Q Y E++ K+F+VT
Sbjct: 515 WEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGERE-ELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVT 763
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE) HSP 1 Score: 176 bits (446), Expect = 8.620e-47 Identity = 94/250 (37.60%), Postives = 147/250 (58.80%), Query Frame = 1
Query: 1 WKGALEREMNDQIDNGVWVQMKR-PKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE*AYLQADINEEIYIELPEDYRAFPNAVGLLRKAIYGLVQSGLWWFRTFTDGIKEKGFEQSHAEPCVFRRIVDGKVVTVIVIYVDDILLARKIKEDEGRTLSDLSSCFKIEDLGEAEFYLGCHITRNREARTLTLGQHIYTETVAKKFNVT 747
W+ A+++E++ G + ++K P+G+ + +K +F + + G I +K R V + F Q+ G +H SSS P+A+S++ ++A A K +L H DV+ AY+ A + EEIY+ PE + V + +A+YGL QSG W D + E G+EQ +PCVFR++VDG+VV +IV+YVDDIL+A E E + L+ F ++DLGE +Y GC I + E L Q Y E + K+F+VT
Sbjct: 374 WEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVMYVDDILVAADEGERE-ELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIEGMLKRFDVT 622
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A6H5KY81_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY81_9PHAE) HSP 1 Score: 168 bits (426), Expect = 3.690e-46 Identity = 91/250 (36.40%), Postives = 147/250 (58.80%), Query Frame = 1
Query: 1 WKGALEREMNDQIDNGVWVQ-MKRPKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE*AYLQADINEEIYIELPEDYRAFPNAVGLLRKAIYGLVQSGLWWFRTFTDGIKEKGFEQSHAEPCVFRRIVDGKVVTVIVIYVDDILLARKIKEDEGRTLSDLSSCFKIEDLGEAEFYLGCHITRNREARTLTLGQHIYTETVAKKFNVT 747
W A+++E++ + G + + M+ P+G+ + ++ +F + + G I +K R V + F Q+ G +H SSS P A+S++ ++A A K +L H DV+ AY+ A +NEEIY+ PE + + V + +A+YGL QSG W D + E G+EQ +PCVFR++VDG+VV +IVIYVDDIL+A E EG + L+ F ++ +GE + GC I + + L Q Y E++ K+ +VT
Sbjct: 117 WVAAMKKEIDGRDKTGTFTKVMELPEGRKAIGSEWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPPAASIKTMIAVATEKGKKLDHWDVKQAYIHATLNEEIYLRFPEGHGSMSGKVVKVERALYGLKQSGREWGVEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREG-LFASLNKNFPVKGMGECTWVDGCAIAMDVDNGIPKLSQTAYIESMLKRCDVT 365
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: UPI001C988E4D (hypothetical protein n=3 Tax=Bacteria TaxID=2 RepID=UPI001C988E4D) HSP 1 Score: 165 bits (418), Expect = 6.750e-46 Identity = 94/243 (38.68%), Postives = 144/243 (59.26%), Query Frame = 1
Query: 1 WKGALEREMNDQIDNGVWVQMKRPKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE*AYLQADINEEIYIELPEDYRAF--PNAVGLLRKAIYGLVQSGLWWFRTFTDGIKEKGFEQSHAEPCVFRRIVDGKVVTVIVIYVDDILLARKIKEDEGRTLSD---LSSCFKIEDLGEAEFYLGCHITRNREARTLTLGQHIY 714
W+ A++ EM+ NGVW + P+G + K ++KR+IG DG++E YK R V + + Q +G Y E+ SP S+R +LA AA ++E+ +DV+ A+L +I E++Y+E P+ + + + V L+++IYGL Q+ W F + +K GF Q+ EPCV+++ G VT +V+YVDDIL+ I D G S LSS F ++DLGEA + LG I R+R R L L Q +Y
Sbjct: 104 WQEAMKSEMDSMYSNGVWTLVDPPEGIVPIGCKWIYKRKIGSDGKVETYKARLVAKGYNQKQGVDYEETFSPVAMLKSIRILLAIAAYYDYEICQMDVKTAFLNGNIEEDLYMEQPKGFISSGEDHKVCKLKRSIYGLKQASRSWNIRFNEAVKSFGFIQNMDEPCVYKKD-SGSAVTFLVLYVDDILI---IGNDTGMISSVKLWLSSNFSMKDLGEATYILGIKIYRDRSKRLLGLSQSMY 342
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A6H5K1G1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G1_9PHAE) HSP 1 Score: 169 bits (429), Expect = 9.650e-46 Identity = 93/250 (37.20%), Postives = 144/250 (57.60%), Query Frame = 1
Query: 1 WKGALEREMNDQIDNGVWVQMKR-PKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE*AYLQADINEEIYIELPEDYRAFPNAVGLLRKAIYGLVQSGLWWFRTFTDGIKEKGFEQSHAEPCVFRRIVDGKVVTVIVIYVDDILLARKIKEDEGRTLSDLSSCFKIEDLGEAEFYLGCHITRNREARTLTLGQHIYTETVAKKFNVT 747
W+ A+++E++ G + ++K P+G+ + K +F + + G I K R V + F Q+ G +H SSS P+A+S++ ++A A K +L H DV+ AY+ A + EE Y+ PE + V + +A+YGL QSG W D + E +EQ +PCVFR++VDG+VV +IVIYVDDIL+A E E + L+ F ++DLGE +Y GC I + E L Q Y E++ K+F+VT
Sbjct: 31 WEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGLKWVFSWKTNEKGLIVDNKARMVARVFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAMLKEETYLRFPEGCGSISGKVVKVERALYGLKQSGREWGFEAADALIESEYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGERE-ELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVT 279
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE) HSP 1 Score: 170 bits (431), Expect = 1.150e-45 Identity = 92/250 (36.80%), Postives = 146/250 (58.40%), Query Frame = 1
Query: 1 WKGALEREMNDQIDNGVWVQMKR-PKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE*AYLQADINEEIYIELPEDYRAFPNAVGLLRKAIYGLVQSGLWWFRTFTDGIKEKGFEQSHAEPCVFRRIVDGKVVTVIVIYVDDILLARKIKEDEGRTLSDLSSCFKIEDLGEAEFYLGCHITRNREARTLTLGQHIYTETVAKKFNVT 747
W+ A+++E++ G + ++K P+G+ + +K +F + G I +K R V + F Q+ G +H SSS P+A+S++ ++A A K +L H DV+ AY+ A + EEIY+ LPE + V + +A+YGL QSG W D + E G EQ +PCVFR++VDG+VV +IVIYVD+IL+A E E + L+ F ++ +GE ++ GC I + E L Q Y E++ K+F+VT
Sbjct: 298 WEAAMKKEIDGHDKTGTFTKVKELPEGREAIGSKWVFSSKTNGKGLIVDFKARMVARGFSQIPGIDFHHSSSAFPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRLPEGCGSMSGKVVKVERALYGLKQSGREWGFEVADALIENGCEQCRVDPCVFRKVVDGEVVGLIVIYVDEILVAADEGERE-ELFASLNKKFPVKYMGECTWFDGCAIAMDVENGITKLSQTAYIESMLKRFDVT 546 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig884.18.1 >prot_A-nodosum_M_contig884.18.1 ID=prot_A-nodosum_M_contig884.18.1|Name=mRNA_A-nodosum_M_contig884.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=92bp MNDQIDNGVWVQMKRPKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFback to top mRNA from alignment at A-nodosum_M_contig884:292892..293638+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig884.18.1 ID=mRNA_A-nodosum_M_contig884.18.1|Name=mRNA_A-nodosum_M_contig884.18.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=747bp|location=Sequence derived from alignment at A-nodosum_M_contig884:292892..293638+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig884:292892..293638+ >mRNA_A-nodosum_M_contig884.18.1 ID=mRNA_A-nodosum_M_contig884.18.1|Name=mRNA_A-nodosum_M_contig884.18.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at A-nodosum_M_contig884:292892..293638+ (Ascophyllum nodosum dioecious)back to top |