prot_A-nodosum_M_contig884.18.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig884.18.1
Unique Nameprot_A-nodosum_M_contig884.18.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length92
Homology
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A2P6QT11_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6QT11_ROSCH)

HSP 1 Score: 77.4 bits (189), Expect = 1.170e-14
Identity = 38/95 (40.00%), Postives = 56/95 (58.95%), Query Frame = 0
Query:    1 MNDQID----NGVWVQMKRPKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE 91
            MN++ID     G W  +  PK K ++ +K ++K +   DG + +YK R V Q F Q KG  Y E+ SP    S++R ++A AAM  WELR +DV+
Sbjct:  126 MNEEIDALLKQGTWKLVPLPKDKNIVGSKWIYKVKKNPDGTVSRYKARLVAQGFSQEKGLDYDETFSPVVRHSTVRLVIALAAMNRWELRQLDVK 220          
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A2P6RCF4_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6RCF4_ROSCH)

HSP 1 Score: 75.1 bits (183), Expect = 8.860e-14
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 0
Query:    1 MNDQID----NGVWVQMKRPKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE 91
            M ++ID     G W  +  PK K ++ +K ++K +   DG I +YK R V Q F Q KG  Y E+ SP    S++R ++A AAM  WELR +DV+
Sbjct:  649 MYEEIDALLKQGTWELVPLPKAKNIVGSKWIYKIKKNPDGSISRYKARLVAQGFSQEKGLDYDETFSPVVRHSTVRLVVALAAMNKWELRQLDVK 743          
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A5AHM3_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5AHM3_VITVI)

HSP 1 Score: 69.3 bits (168), Expect = 1.220e-12
Identity = 34/95 (35.79%), Postives = 56/95 (58.95%), Query Frame = 0
Query:    1 MNDQID----NGVWVQMKRPKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE 91
            M +++D    N  W  +  P G++V+  K ++K +   DG +E+YK R V + F Q  G  Y E+ +P    SS+RA+LA AA + W+L H++V+
Sbjct:   76 MKEELDALTKNHTWDLVTLPPGQSVVGCKWIYKIKTRSDGSVERYKARLVAKGFTQEYGIDYEETFAPVACISSVRALLAVAAARKWDLFHMNVK 170          
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A7D9ER90_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9ER90_PARCT)

HSP 1 Score: 68.9 bits (167), Expect = 3.880e-12
Identity = 33/86 (38.37%), Postives = 52/86 (60.47%), Query Frame = 0
Query:    6 DNGVWVQMKRPKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE 91
            DN  W  ++ PK + VL  K ++K + G DGQI+KYK R+V + F QV+G  + ++ +P     + R +LA AA K+  L  +DV+
Sbjct:   10 DNKTWTLVREPKDRKVLPGKWVYKVKYGADGQIDKYKARYVAKGFAQVEGLDFSDTYTPKCKPETFRILLAIAAQKDLHLSQMDVK 95          
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A7N2MLY8_QUELO (Integrase catalytic domain-containing protein n=5 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2MLY8_QUELO)

HSP 1 Score: 70.1 bits (170), Expect = 5.100e-12
Identity = 36/95 (37.89%), Postives = 55/95 (57.89%), Query Frame = 0
Query:    1 MNDQID----NGVWVQMKRPKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE 91
            M +++D    N  W  +  P GK+V+  K ++K +   DG IE+YK R V + F Q  G  Y E+ +P    SS+RA+LA AA + W+L  +DV+
Sbjct:  673 MKEELDALSKNHTWDLVTLPPGKSVVGCKWIYKIKTRSDGSIERYKARLVAKGFTQEYGIDYEETFAPVARISSVRALLAVAAARKWDLFQMDVK 767          
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A7N2LTG1_QUELO (Integrase catalytic domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2LTG1_QUELO)

HSP 1 Score: 70.1 bits (170), Expect = 5.130e-12
Identity = 36/95 (37.89%), Postives = 55/95 (57.89%), Query Frame = 0
Query:    1 MNDQID----NGVWVQMKRPKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE 91
            M +++D    N  W  +  P GK+V+  K ++K +   DG IE+YK R V + F Q  G  Y E+ +P    SS+RA+LA AA + W+L  +DV+
Sbjct:  907 MKEELDALSKNHTWDLVTLPPGKSVVGCKWIYKIKTRSDGSIERYKARLVAKGFTQEYGIDYEETFAPVARISSVRALLAVAAARKWDLFQMDVK 1001          
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A392MEN3_9FABA (Retrovirus-related pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MEN3_9FABA)

HSP 1 Score: 68.6 bits (166), Expect = 9.150e-12
Identity = 31/90 (34.44%), Postives = 51/90 (56.67%), Query Frame = 0
Query:    1 MNDQIDNGVWVQMKRPKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDV 90
            + D  DN  W+ ++ P GK  +  K ++K +   +G IE+YK R V + + Q +G  Y +  SP    +++R +LA AA+K W L  +DV
Sbjct:  161 LQDLADNQTWIVVELPSGKVPIGCKWVYKIKYHANGSIERYKARLVAKGYTQTEGIDYCDIFSPVAKITTVRVLLALAAIKGWHLEQLDV 250          
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A5BI31_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BI31_VITVI)

HSP 1 Score: 69.3 bits (168), Expect = 9.450e-12
Identity = 34/85 (40.00%), Postives = 49/85 (57.65%), Query Frame = 0
Query:    6 DNGVWVQMKRPKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDV 90
            +NG W     PKGK  L ++++++ +   +G IE+ K R V     Q  G  YHE+ SP    +++RA LA AA KNWEL  +DV
Sbjct:  620 ENGTWTLEPLPKGKRALGSQSVYRTKYFSNGDIERLKSRLVVLGNHQEAGIDYHETFSPVAKMTTVRAFLAIAASKNWELHQMDV 704          
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A438HFT6_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HFT6_VITVI)

HSP 1 Score: 69.3 bits (168), Expect = 9.470e-12
Identity = 35/85 (41.18%), Postives = 48/85 (56.47%), Query Frame = 0
Query:    6 DNGVWVQMKRPKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDV 90
            +NG W     PKGK  L ++ ++K +   +G IE+ K R V     Q  G  YHE+ SP    +++RA LA AA KNWEL  +DV
Sbjct:  580 ENGTWTLEPLPKGKRALGSQWVYKTKYFSNGDIERLKSRLVVLGNHQEAGIDYHETFSPVAKMTTVRAFLAIAASKNWELHQMDV 664          
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A438GLW9_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GLW9_VITVI)

HSP 1 Score: 69.3 bits (168), Expect = 9.520e-12
Identity = 35/85 (41.18%), Postives = 48/85 (56.47%), Query Frame = 0
Query:    6 DNGVWVQMKRPKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDV 90
            +NG W     PKGK  L ++ +++ +   +G IE+ K R V     Q  G  YHE+ SP    ++MRA LA AA KNWEL  +DV
Sbjct:  746 ENGTWTLEPLPKGKRALGSQWVYRTKYFSNGDIERLKSRLVVLGNHQEVGIDYHETFSPVAKMTTMRAFLAIAASKNWELHQMDV 830          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P6QT11_ROSCH1.170e-1440.00Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A2P6RCF4_ROSCH8.860e-1440.00Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A5AHM3_VITVI1.220e-1235.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9ER90_PARCT3.880e-1238.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7N2MLY8_QUELO5.100e-1237.89Integrase catalytic domain-containing protein n=5 ... [more]
A0A7N2LTG1_QUELO5.130e-1237.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A392MEN3_9FABA9.150e-1234.44Retrovirus-related pol polyprotein from transposon... [more]
A5BI31_VITVI9.450e-1240.00Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A438HFT6_VITVI9.470e-1241.18Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GLW9_VITVI9.520e-1241.18Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 7..91
e-value: 4.2E-12
score: 46.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig884contigA-nodosum_M_contig884:292916..293191 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig884.18.1mRNA_A-nodosum_M_contig884.18.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig884 292892..293638 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig884.18.1 ID=prot_A-nodosum_M_contig884.18.1|Name=mRNA_A-nodosum_M_contig884.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=92bp
MNDQIDNGVWVQMKRPKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRF
PQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2