mRNA_A-nodosum_M_contig884.18.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig884.18.1
Unique NamemRNA_A-nodosum_M_contig884.18.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 2.550e-48
Identity = 94/250 (37.60%), Postives = 148/250 (59.20%), Query Frame = 1
Query:    1 WKGALEREMNDQIDNGVWVQMKR-PKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE*AYLQADINEEIYIELPEDYRAFPNAVGLLRKAIYGLVQSGLWWFRTFTDGIKEKGFEQSHAEPCVFRRIVDGKVVTVIVIYVDDILLARKIKEDEGRTLSDLSSCFKIEDLGEAEFYLGCHITRNREARTLTLGQHIYTETVAKKFNVT 747
            W+ A+++E++     G + ++K  P+G+  + +K +F  +  + G I  +K R V + F Q+ G  +H SSS  P+A+S++ ++A A  K  +L H DV+ AY+ A + EEIY+  PE   +    V  + +A+YGL QSG  W     D + E G+EQ   +PC+FR++VDG+VV +IVI VDDIL+A    E E    + L++ F ++DLGE  +Y GC I  + E    TL Q    E++ K+FNVT
Sbjct:   31 WETAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLILDFKARVVARGFSQIPGIDFHRSSSACPSAASLKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIEYGYEQCRVDPCIFRKVVDGEVVGLIVINVDDILVAADEGERED-LFASLNNRFPVKDLGECTWYDGCAIAMDVENGITTLSQTAKIESMLKRFNVT 279          
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 1.460e-47
Identity = 93/250 (37.20%), Postives = 148/250 (59.20%), Query Frame = 1
Query:    1 WKGALEREMNDQIDNGVWVQMKR-PKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE*AYLQADINEEIYIELPEDYRAFPNAVGLLRKAIYGLVQSGLWWFRTFTDGIKEKGFEQSHAEPCVFRRIVDGKVVTVIVIYVDDILLARKIKEDEGRTLSDLSSCFKIEDLGEAEFYLGCHITRNREARTLTLGQHIYTETVAKKFNVT 747
            W+ A+++E++     G + ++K  P+G+  + +K +F  +  + G I  +K R V + F Q+ G  +H SSS  P+A+S++ ++A A  K  +L H DV+ AY+ A + EEIY+  PE   +    V  + +A+YGL QSG  W     D + E G+EQ   +PCVFR++VDG+VV +IVIYVDDI++A    E E    + L+  F ++D+GE  +Y GC I  + E     L Q  Y E++ K+F+VT
Sbjct:  228 WEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIVAADEGERE-ELFASLNKKFPVKDVGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVT 476          
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 178 bits (451), Expect = 2.340e-47
Identity = 91/245 (37.14%), Postives = 151/245 (61.63%), Query Frame = 1
Query:    1 WKGALEREMNDQIDNGVWVQMKRPKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE*AYLQADINEEIYIELPEDYRAFPNAVGLLRKAIYGLVQSGLWWFRTFTDGIKEKGFEQSHAEPCVFRRIVDGKVVTVIVIYVDDILLARKIKEDEGRTLSDLSSCFKIEDLGEAEFYLGCHITRNREARTLTLGQHIYTETVAKK 735
            W+ A E E+      GV+ ++ RP+ + ++ +K +FK + G DGQ+EKYK R V Q F QV+G  Y+E+ +P   ++S+R +LA AA  +WE+  +DV+ A+L  ++ EEIY+++P  ++A  +AV  L+KA+YGL Q+   W++  +  +K  GF +  A+ CVF + +D +   +I +YVDD ++     +   +T SDL S F + DLGE  + L   +TRNR+ RT+ L Q  Y E + ++
Sbjct: 1010 WRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMD-RHPPIIAVYVDDNMVLSDSLDLVTKTKSDLGSRFDMTDLGEVCWILNMEVTRNRQERTIRLSQSQYIEDILER 1253          
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A6H5JXE8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXE8_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 4.740e-47
Identity = 93/250 (37.20%), Postives = 144/250 (57.60%), Query Frame = 1
Query:    1 WKGALEREMNDQIDNGVWVQMKR-PKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE*AYLQADINEEIYIELPEDYRAFPNAVGLLRKAIYGLVQSGLWWFRTFTDGIKEKGFEQSHAEPCVFRRIVDGKVVTVIVIYVDDILLARKIKEDEGRTLSDLSSCFKIEDLGEAEFYLGCHITRNREARTLTLGQHIYTETVAKKFNVT 747
            W+ A+E E++D    G + ++K  P+G+  + +K +F  +  + G I  +K R V + F ++ G  +H SSS  P+A+S++ ++A A  K  +L H DV+ AY+ A + EEIY+  PE  R     V  + +A+YG  QSG  W     D + E G+EQ   +PCVFR++VDG+VV +IVIYVDDIL+A    E E    + L+    ++DLGE  +Y GC    + E     L    Y E++ K+F+VT
Sbjct:   31 WEAAMENEIDDHDKPGTFSKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSRIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLEEEIYLRFPEGCRGMSGKVVKVERALYGPKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGERE-ELFASLNKKVPVKDLGECTWYDGCATAMDVENGIAKLSHTAYIESMLKRFDVT 279          
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 4.800e-47
Identity = 94/250 (37.60%), Postives = 147/250 (58.80%), Query Frame = 1
Query:    1 WKGALEREMNDQIDNGVWVQMKR-PKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE*AYLQADINEEIYIELPEDYRAFPNAVGLLRKAIYGLVQSGLWWFRTFTDGIKEKGFEQSHAEPCVFRRIVDGKVVTVIVIYVDDILLARKIKEDEGRTLSDLSSCFKIEDLGEAEFYLGCHITRNREARTLTLGQHIYTETVAKKFNVT 747
            W+ A+++E++     G + ++K  P+G+  + +K +F  +  + G I  +K R V + F Q+ G  +H SSS  P+A+S++ ++A A  K  +L H DV+ AY+ A + EEIY+  PE   +    V  + +A+YGL Q G  W     D + E G+EQ   +PCVFR++VDG+VV +IVIYVDDIL+A    E E    + L+  F ++DLGE  +Y GC I  + E     L Q  Y E++ K+F+VT
Sbjct:  515 WEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGERE-ELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVT 763          
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 8.620e-47
Identity = 94/250 (37.60%), Postives = 147/250 (58.80%), Query Frame = 1
Query:    1 WKGALEREMNDQIDNGVWVQMKR-PKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE*AYLQADINEEIYIELPEDYRAFPNAVGLLRKAIYGLVQSGLWWFRTFTDGIKEKGFEQSHAEPCVFRRIVDGKVVTVIVIYVDDILLARKIKEDEGRTLSDLSSCFKIEDLGEAEFYLGCHITRNREARTLTLGQHIYTETVAKKFNVT 747
            W+ A+++E++     G + ++K  P+G+  + +K +F  +  + G I  +K R V + F Q+ G  +H SSS  P+A+S++ ++A A  K  +L H DV+ AY+ A + EEIY+  PE   +    V  + +A+YGL QSG  W     D + E G+EQ   +PCVFR++VDG+VV +IV+YVDDIL+A    E E    + L+  F ++DLGE  +Y GC I  + E     L Q  Y E + K+F+VT
Sbjct:  374 WEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVMYVDDILVAADEGERE-ELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIEGMLKRFDVT 622          
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A6H5KY81_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY81_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 3.690e-46
Identity = 91/250 (36.40%), Postives = 147/250 (58.80%), Query Frame = 1
Query:    1 WKGALEREMNDQIDNGVWVQ-MKRPKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE*AYLQADINEEIYIELPEDYRAFPNAVGLLRKAIYGLVQSGLWWFRTFTDGIKEKGFEQSHAEPCVFRRIVDGKVVTVIVIYVDDILLARKIKEDEGRTLSDLSSCFKIEDLGEAEFYLGCHITRNREARTLTLGQHIYTETVAKKFNVT 747
            W  A+++E++ +   G + + M+ P+G+  + ++ +F  +  + G I  +K R V + F Q+ G  +H SSS  P A+S++ ++A A  K  +L H DV+ AY+ A +NEEIY+  PE + +    V  + +A+YGL QSG  W     D + E G+EQ   +PCVFR++VDG+VV +IVIYVDDIL+A    E EG   + L+  F ++ +GE  +  GC I  + +     L Q  Y E++ K+ +VT
Sbjct:  117 WVAAMKKEIDGRDKTGTFTKVMELPEGRKAIGSEWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPPAASIKTMIAVATEKGKKLDHWDVKQAYIHATLNEEIYLRFPEGHGSMSGKVVKVERALYGLKQSGREWGVEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREG-LFASLNKNFPVKGMGECTWVDGCAIAMDVDNGIPKLSQTAYIESMLKRCDVT 365          
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: UPI001C988E4D (hypothetical protein n=3 Tax=Bacteria TaxID=2 RepID=UPI001C988E4D)

HSP 1 Score: 165 bits (418), Expect = 6.750e-46
Identity = 94/243 (38.68%), Postives = 144/243 (59.26%), Query Frame = 1
Query:    1 WKGALEREMNDQIDNGVWVQMKRPKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE*AYLQADINEEIYIELPEDYRAF--PNAVGLLRKAIYGLVQSGLWWFRTFTDGIKEKGFEQSHAEPCVFRRIVDGKVVTVIVIYVDDILLARKIKEDEGRTLSD---LSSCFKIEDLGEAEFYLGCHITRNREARTLTLGQHIY 714
            W+ A++ EM+    NGVW  +  P+G   +  K ++KR+IG DG++E YK R V + + Q +G  Y E+ SP     S+R +LA AA  ++E+  +DV+ A+L  +I E++Y+E P+ + +    + V  L+++IYGL Q+   W   F + +K  GF Q+  EPCV+++   G  VT +V+YVDDIL+   I  D G   S    LSS F ++DLGEA + LG  I R+R  R L L Q +Y
Sbjct:  104 WQEAMKSEMDSMYSNGVWTLVDPPEGIVPIGCKWIYKRKIGSDGKVETYKARLVAKGYNQKQGVDYEETFSPVAMLKSIRILLAIAAYYDYEICQMDVKTAFLNGNIEEDLYMEQPKGFISSGEDHKVCKLKRSIYGLKQASRSWNIRFNEAVKSFGFIQNMDEPCVYKKD-SGSAVTFLVLYVDDILI---IGNDTGMISSVKLWLSSNFSMKDLGEATYILGIKIYRDRSKRLLGLSQSMY 342          
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A6H5K1G1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G1_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 9.650e-46
Identity = 93/250 (37.20%), Postives = 144/250 (57.60%), Query Frame = 1
Query:    1 WKGALEREMNDQIDNGVWVQMKR-PKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE*AYLQADINEEIYIELPEDYRAFPNAVGLLRKAIYGLVQSGLWWFRTFTDGIKEKGFEQSHAEPCVFRRIVDGKVVTVIVIYVDDILLARKIKEDEGRTLSDLSSCFKIEDLGEAEFYLGCHITRNREARTLTLGQHIYTETVAKKFNVT 747
            W+ A+++E++     G + ++K  P+G+  +  K +F  +  + G I   K R V + F Q+ G  +H SSS  P+A+S++ ++A A  K  +L H DV+ AY+ A + EE Y+  PE   +    V  + +A+YGL QSG  W     D + E  +EQ   +PCVFR++VDG+VV +IVIYVDDIL+A    E E    + L+  F ++DLGE  +Y GC I  + E     L Q  Y E++ K+F+VT
Sbjct:   31 WEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGLKWVFSWKTNEKGLIVDNKARMVARVFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAMLKEETYLRFPEGCGSISGKVVKVERALYGLKQSGREWGFEAADALIESEYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGERE-ELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVT 279          
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 1.150e-45
Identity = 92/250 (36.80%), Postives = 146/250 (58.40%), Query Frame = 1
Query:    1 WKGALEREMNDQIDNGVWVQMKR-PKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRFPQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE*AYLQADINEEIYIELPEDYRAFPNAVGLLRKAIYGLVQSGLWWFRTFTDGIKEKGFEQSHAEPCVFRRIVDGKVVTVIVIYVDDILLARKIKEDEGRTLSDLSSCFKIEDLGEAEFYLGCHITRNREARTLTLGQHIYTETVAKKFNVT 747
            W+ A+++E++     G + ++K  P+G+  + +K +F  +    G I  +K R V + F Q+ G  +H SSS  P+A+S++ ++A A  K  +L H DV+ AY+ A + EEIY+ LPE   +    V  + +A+YGL QSG  W     D + E G EQ   +PCVFR++VDG+VV +IVIYVD+IL+A    E E    + L+  F ++ +GE  ++ GC I  + E     L Q  Y E++ K+F+VT
Sbjct:  298 WEAAMKKEIDGHDKTGTFTKVKELPEGREAIGSKWVFSSKTNGKGLIVDFKARMVARGFSQIPGIDFHHSSSAFPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRLPEGCGSMSGKVVKVERALYGLKQSGREWGFEVADALIENGCEQCRVDPCVFRKVVDGEVVGLIVIYVDEILVAADEGERE-ELFASLNKKFPVKYMGECTWFDGCAIAMDVENGITKLSQTAYIESMLKRFDVT 546          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig884.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUN0_9PHAE2.550e-4837.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE1.460e-4737.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0C2WN23_AMAMK2.340e-4737.14Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JXE8_9PHAE4.740e-4737.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE4.800e-4737.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE8.620e-4737.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KY81_9PHAE3.690e-4636.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001C988E4D6.750e-4638.68hypothetical protein n=3 Tax=Bacteria TaxID=2 RepI... [more]
A0A6H5K1G1_9PHAE9.650e-4637.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JK49_9PHAE1.150e-4536.80Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig884contigA-nodosum_M_contig884:292892..293638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3641.EOY00074
PFAMsRVT_2,Retrotran_gag_2,Retrotran_gag_3,Retrotrans_gag,rve
Model size747
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.21e-15
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37RIF@33090|Viridiplantae,3GBWZ@35493|Streptophyta
Descriptioncysteine-rich RLK (RECEPTOR-like protein kinase) 8
Cds size276
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870297.2897868-UTR-A-nodosum_M_contig884:292891..2929151680870297.2897868-UTR-A-nodosum_M_contig884:292891..292915Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig884 292892..292915 +
1680870297.3151872-UTR-A-nodosum_M_contig884:293191..2936381680870297.3151872-UTR-A-nodosum_M_contig884:293191..293638Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig884 293192..293638 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870297.3040416-CDS-A-nodosum_M_contig884:292915..2931911680870297.3040416-CDS-A-nodosum_M_contig884:292915..293191Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig884 292916..293191 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig884.18.1prot_A-nodosum_M_contig884.18.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig884 292916..293191 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig884.18.1

>prot_A-nodosum_M_contig884.18.1 ID=prot_A-nodosum_M_contig884.18.1|Name=mRNA_A-nodosum_M_contig884.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=92bp
MNDQIDNGVWVQMKRPKGKTVLDTKTLFKREIGKDGQIEKYKCRFVTQRF
PQVKGFYYHESSSPTPTASSMRAILATAAMKNWELRHIDVE*
back to top

mRNA from alignment at A-nodosum_M_contig884:292892..293638+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig884.18.1 ID=mRNA_A-nodosum_M_contig884.18.1|Name=mRNA_A-nodosum_M_contig884.18.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=747bp|location=Sequence derived from alignment at A-nodosum_M_contig884:292892..293638+ (Ascophyllum nodosum dioecious)
TGGAAGGGAGCGCTAGAGAGAGAAATGAATGATCAGATTGATAACGGCGT ATGGGTACAGATGAAGCGCCCGAAAGGCAAGACTGTCCTAGATACTAAGA CCCTCTTCAAGCGTGAGATTGGAAAGGATGGCCAAATAGAGAAATATAAG TGTCGCTTCGTGACCCAGAGGTTTCCTCAGGTGAAAGGGTTTTACTATCA TGAGTCGTCCTCTCCCACTCCTACGGCCTCCAGCATGAGGGCAATACTTG CCACCGCAGCCATGAAGAATTGGGAACTCCGGCACATCGATGTCGAGTAA GCATATCTTCAGGCCGACATCAATGAAGAGATCTACATCGAACTACCCGA AGACTACCGCGCTTTCCCCAACGCGGTCGGCTTGCTAAGGAAGGCCATCT ATGGATTAGTGCAATCAGGATTATGGTGGTTCCGAACATTCACAGACGGC ATCAAAGAGAAGGGCTTCGAACAGTCCCACGCGGAACCATGCGTGTTCAG GAGAATCGTCGACGGCAAAGTCGTGACCGTTATTGTGATATACGTCGACG ACATACTGCTGGCGAGAAAAATAAAGGAGGATGAGGGGCGGACGTTGTCA GATCTCAGTTCATGCTTCAAGATTGAGGACCTAGGGGAAGCGGAATTCTA CCTAGGATGTCATATCACGCGGAACAGGGAAGCAAGGACATTAACCTTAG GCCAACACATCTATACCGAGACCGTGGCGAAGAAATTCAATGTGACC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig884:292892..293638+

>mRNA_A-nodosum_M_contig884.18.1 ID=mRNA_A-nodosum_M_contig884.18.1|Name=mRNA_A-nodosum_M_contig884.18.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at A-nodosum_M_contig884:292892..293638+ (Ascophyllum nodosum dioecious)
ATGAATGATCAGATTGATAACGGCGTATGGGTACAGATGAAGCGCCCGAA
AGGCAAGACTGTCCTAGATACTAAGACCCTCTTCAAGCGTGAGATTGGAA
AGGATGGCCAAATAGAGAAATATAAGTGTCGCTTCGTGACCCAGAGGTTT
CCTCAGGTGAAAGGGTTTTACTATCATGAGTCGTCCTCTCCCACTCCTAC
GGCCTCCAGCATGAGGGCAATACTTGCCACCGCAGCCATGAAGAATTGGG
AACTCCGGCACATCGATGTCGAGTAA
back to top