mRNA_A-nodosum_M_contig870.14.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig870.14.1
Unique NamemRNA_A-nodosum_M_contig870.14.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig870.14.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 2.500e-40
Identity = 82/143 (57.34%), Postives = 107/143 (74.83%), Query Frame = 3
Query:  255 GEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRIL-TDDAVLMHVGCTCHRIECVTALVFDGPGVKKSMALARAVVTRYTKSSQAAGRLQELCGIVGIIPLRVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVAP 680
            GEDLA  I +MI+ HGLTG V  C TDCEPSMVKAGR+L    + L H+GC+ HR+E  T+ VF+G  +  ++A ARAVV RY +SSQ +GRL    GI+ + PL V+QDVETRWWS+ +M+ERL+YL +A++LHES DN+AP
Sbjct:  122 GEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRSSQMSGRLAVFIGILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAP 263          
BLAST of mRNA_A-nodosum_M_contig870.14.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 8.410e-40
Identity = 79/143 (55.24%), Postives = 106/143 (74.13%), Query Frame = 3
Query:  255 GEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRIL-TDDAVLMHVGCTCHRIECVTALVFDGPGVKKSMALARAVVTRYTKSSQAAGRLQELCGIVGIIPLRVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVAP 680
            GEDLA  +  M++ H LTG V+ C TDCEPSM+KAGR+L  D + + H+GC+ HR+E  T+ VF+G  +  ++ LAR +V RY KSSQ A RL +LCGI+ + PL V+QDVETRWWST +MV RL+YL +A++LHES+D V P
Sbjct:   86 GEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCGILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHP 227          
BLAST of mRNA_A-nodosum_M_contig870.14.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 4.690e-39
Identity = 74/142 (52.11%), Postives = 102/142 (71.83%), Query Frame = 3
Query:  255 GEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDDAVLMHVGCTCHRIECVTALVFDGPGVKKSMALARAVVTRYTKSSQAAGRLQELCGIVGIIPLRVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVAP 680
            GEDL  +++ MI  +GLT   V   TDCEPSMVKAGR+L ++  + H+GC CHR+E +T+  F GPGV K++ALAR VVTRY  SSQA+ RL+++  IV +   +V+QDVETRWWST + + RL+ LRR +  HE +D++ P
Sbjct:   95 GEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQMRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPP 236          
BLAST of mRNA_A-nodosum_M_contig870.14.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 3.860e-38
Identity = 76/142 (53.52%), Postives = 101/142 (71.13%), Query Frame = 3
Query:  255 GEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDDAVLMHVGCTCHRIECVTALVFDGPGVKKSMALARAVVTRYTKSSQAAGRLQELCGIVGIIPLRVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVAP 680
            GEDL  +++ MI  +GLTG  V   TDCE SMVKAGR+L ++  + H+GC CHR+E +T+  F GPGV K++ALAR VVTRYT SSQA+ RL+++C IV +    V+QDVETRWWST   + RL+ LRR +  HE +D+  P
Sbjct:   51 GEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQVCDIVQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPP 192          
BLAST of mRNA_A-nodosum_M_contig870.14.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 4.100e-35
Identity = 66/124 (53.23%), Postives = 89/124 (71.77%), Query Frame = 3
Query:  255 GEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDDAVLMHVGCTCHRIECVTALVFDGPGVKKSMALARAVVTRYTKSSQAAGRLQELCGIVGIIPLRVIQDVETRWWSTQSMVERL 626
            GEDL  +++ MI  +GLTG  V   TDCEP MVKAGR+L ++  + H+GC CHR E +T+  F GPGV K++AL R VVTRYT SSQA+ RL+++C IV +   +V+QDVETRWWST   ++ +
Sbjct:   39 GEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDIVQVERKKVVQDVETRWWSTPREIDSI 162          
BLAST of mRNA_A-nodosum_M_contig870.14.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.260e-26
Identity = 55/102 (53.92%), Postives = 74/102 (72.55%), Query Frame = 1
Query: 1327 REEVTRYRATSGLAMEEAQESGKILYPDPLDWWRINAVKFPLLAALARRLLTIPASQAQSERVFSSAGQIVTQTRNRLSSENVELLVALKNIWSVVEEWQQS 1632
            R E+T ++ ++G+ M E  + G  +Y DPLDWWR+    FP LA LARR+L IPA+QA+SER+FS AG IVT+ RN L+   VELLV L++ W +VEEW+QS
Sbjct:  195 RVELTAFKVSTGIKMYEEDKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVEEWEQS 296          
BLAST of mRNA_A-nodosum_M_contig870.14.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.320e-22
Identity = 60/128 (46.88%), Postives = 83/128 (64.84%), Query Frame = 2
Query:  752 KKLESNNVTGSLVVPLICDLRTGLDSERKALQQPNPGASADVLAARVLLLPCVEALAKDFNNRFGDGSDILTFREGPRRQPQGFRKVQVMATALDPRCKMLYGVLPNEHEGVWQAVAMAAADIAKSTQ 1135
            K++  + VTGSLVVP I DLR  L+     L +  P + A+V  A   ++PC++AL  D+ +R+GDG +IL ++EGPRRQP GF+ V V+ATALDPR K+ YGV  +E   VW+ V   A  IA  T+
Sbjct:  191 KRVIQDVVTGSLVVPFIYDLRNSLEDAIDDLVELPPDSDANVNTAWAAVMPCIKALRDDYIDRWGDGHNILIYKEGPRRQPGGFKPVHVLATALDPRTKIPYGVDEDEKADVWKLVQEEAVKIAVETR 318          
BLAST of mRNA_A-nodosum_M_contig870.14.1 vs. uniprot
Match: A0A6H5JVE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE5_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.490e-19
Identity = 46/86 (53.49%), Postives = 63/86 (73.26%), Query Frame = 2
Query:  842 LQQPNPGASADVLAARVLLLPCVEALAKDFNNRFGDGSDILTFREGPRRQPQGFRKVQVMATALDPRCKMLYGVLPNEHEGVWQAV 1099
            L +  P + A+V  AR  ++PC++AL  DF NR+GDG +IL ++EGPRRQP GF+ VQV+ATALDPR K+L+GV  +E   VW+ V
Sbjct:  144 LAELPPDSDANVNTARAAVMPCIKALRDDFINRWGDGRNILNYKEGPRRQPAGFKPVQVLATALDPRTKILHGVDEDEKADVWKLV 229          
BLAST of mRNA_A-nodosum_M_contig870.14.1 vs. uniprot
Match: UPI000BBD9CAA (zinc finger BED domain-containing protein 1-like n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=UPI000BBD9CAA)

HSP 1 Score: 86.7 bits (213), Expect = 1.480e-15
Identity = 45/95 (47.37%), Postives = 63/95 (66.32%), Query Frame = 1
Query: 1312 LPE*SREEVTRYRATSGLAMEEAQESGKILYPDPLDWWRINAVKFPLLAALARRLLTIPASQAQSERVFSSAGQIVTQTRNRLSSENVELLVALK 1596
            LPE  REEVT Y+ TS ++++E          DPL WW+ NA K+P +A LA+R L +P +   SERVFS+AG IVT +R+RL  ENV+ L+ ++
Sbjct:  145 LPETIREEVTSYKETSCISVDE----------DPLAWWKTNAHKYPHVAKLAQRDLAVPGTSVPSERVFSTAGDIVTASRSRLLPENVDKLIFMQ 229          
BLAST of mRNA_A-nodosum_M_contig870.14.1 vs. uniprot
Match: A0A3N0YQ94_ANAGA (Zinc finger BED domain-containing protein 1 n=1 Tax=Anabarilius grahami TaxID=495550 RepID=A0A3N0YQ94_ANAGA)

HSP 1 Score: 83.6 bits (205), Expect = 5.250e-14
Identity = 42/96 (43.75%), Postives = 59/96 (61.46%), Query Frame = 1
Query: 1327 REEVTRYRATSGLAMEEAQESGKILYPDPLDWWRINAVKFPLLAALARRLLTIPASQAQSERVFSSAGQIVTQTRNRLSSENVELLVALKNIWSVV 1614
            +EEV  Y A SG+ ++           DPL WW+ N  K+P +A +AR  L +P S   SERVFS+AG IVT  R+ LS +NV++LV LK I+ ++
Sbjct:   78 KEEVASYLAASGITVDG----------DPLTWWKSNECKYPHIAKMARCYLAVPGSSVPSERVFSTAGDIVTAKRSTLSLDNVDILVFLKKIFEII 163          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig870.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUY5_9PHAE2.500e-4057.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCS5_ECTSI8.410e-4055.24Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JJV8_9PHAE4.690e-3952.11Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE3.860e-3853.52Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5KVI1_9PHAE4.100e-3553.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWI1_9PHAE1.260e-2653.92Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L7Y8_9PHAE1.320e-2246.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVE5_9PHAE2.490e-1953.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000BBD9CAA1.480e-1547.37zinc finger BED domain-containing protein 1-like n... [more]
A0A3N0YQ94_ANAGA5.250e-1443.75Zinc finger BED domain-containing protein 1 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig870contigA-nodosum_M_contig870:313575..315206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LCS5
PFAMsDUF659,Dimer_Tnp_hAT,zf-BED
Model size1632
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.6e-19
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota
Descriptionprotein dimerization activity
Cds size288
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870267.8980658-CDS-A-nodosum_M_contig870:313574..3138621680870267.8980658-CDS-A-nodosum_M_contig870:313574..313862Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig870 313575..313862 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870267.9175348-UTR-A-nodosum_M_contig870:313862..3152061680870267.9175348-UTR-A-nodosum_M_contig870:313862..315206Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig870 313863..315206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig870.14.1prot_A-nodosum_M_contig870.14.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig870 313575..313862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig870.14.1

>prot_A-nodosum_M_contig870.14.1 ID=prot_A-nodosum_M_contig870.14.1|Name=mRNA_A-nodosum_M_contig870.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=96bp
MVRTLKGKASIPQRRVLIARMEELLVDLQGSVATMLTGQYVSMTTDGWTS
RANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGKTWLYPSRP*
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mRNA from alignment at A-nodosum_M_contig870:313575..315206+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig870.14.1 ID=mRNA_A-nodosum_M_contig870.14.1|Name=mRNA_A-nodosum_M_contig870.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1632bp|location=Sequence derived from alignment at A-nodosum_M_contig870:313575..315206+ (Ascophyllum nodosum dioecious)
ATGGTGCGCACGCTTAAAGGCAAGGCCAGCATACCACAGCGACGTGTTCT AATCGCCCGGATGGAGGAACTTCTAGTGGACCTGCAAGGGTCGGTCGCCA CCATGCTGACGGGCCAGTACGTCTCCATGACCACGGACGGATGGACGTCA CGCGCCAACGAGTCCTACATTTCCTTCACCGTCGTGTACGTCAATGACGA TTGGAAGATGGTGACGCTCGCGCTCAGCTGTTCGAAGAAACAAGGTTCGA CGAAGGGGAAGACCTGGCTATATCCATCGAGACCATGATCAAGAACCACG GCCTCACCGGGCACGTGGTCGTGTGCAACACGGACTGCGAGCCGTCAATG GTGAAGGCGGGTCGCATTCTCACCGATGATGCCGTATTGATGCACGTTGG GTGCACCTGTCACCGGATCGAGTGCGTCACGGCGCTGGTCTTCGACGGGC CCGGCGTGAAGAAGTCCATGGCTCTAGCTCGTGCCGTGGTGACTCGCTAC ACAAAGTCCTCACAGGCTGCAGGGCGACTTCAGGAGTTGTGCGGTATAGT CGGCATCATCCCTTTGAGGGTAATTCAGGACGTAGAGACGCGGTGGTGGT CGACGCAGTCGATGGTCGAGCGCCTGGTGTACCTTCGACGTGCTGTTGAG CTGCATGAGTCCCTGGACAACGTCGCCCCCTGCTAGGGCCGGTGGACTGG AACGTCCTGGAGCTGCTCGAGCCTGTTCTTGCGCCGTTCATGTATGTCCA GAAGAAGCTCGAGTCCAACAACGTGACGGGAAGCTTGGTCGTGCCGCTCA TCTGTGACCTCCGTACCGGGTTGGACTCGGAGCGAAAGGCGCTGCAGCAG CCTAACCCGGGCGCATCCGCTGATGTCTTGGCGGCGCGGGTATTGCTCCT GCCCTGCGTCGAGGCACTAGCCAAGGATTTCAATAACCGCTTCGGTGATG GGTCTGACATCTTGACGTTCCGCGAAGGTCCACGACGCCAGCCACAGGGC TTTCGGAAGGTGCAAGTTATGGCGACCGCCCTCGACCCACGGTGCAAGAT GCTGTACGGCGTTCTACCCAACGAGCACGAGGGGGTGTGGCAGGCGGTGG CCATGGCGGCCGCGGACATCGCCAAGAGCACACAGGCATCCGTCCGGACA ACGGCATTGTCAGCGGCTGGATCAACGCCAGCTGGACCTGGGCCTGGGGC ATCTGCCCGTCCCGCTAGCAAACGATTTTGCGGCGGCTTCATGGCGGCTT CCCAGGCGCAGGCAGCGTCAGCTTCCACGGTCACCGCCGCGCCGTCGCTG CCGGCTGAGCACTTCCTGAATGAAGCAGGGAGGAGGTCACAAGGTATCGG GCGACTAGCGGGTTGGCGATGGAAGAGGCACAGGAGAGCGGCAAGATCCT CTACCCCGACCCGCTGGATTGGTGGCGGATAAACGCCGTCAAATTCCCGC TGCTAGCGGCGCTTGCCCGGCGCCTTTTGACCATCCCGGCATCGCAGGCG CAGTCGGAGCGCGTGTTCTCGAGCGCTGGGCAGATTGTCACCCAAACGCG CAACCGCCTGTCATCGGAAAACGTCGAGCTTCTGGTGGCATTGAAGAACA TTTGGAGTGTGGTGGAGGAATGGCAGCAGTCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig870:313575..315206+

>mRNA_A-nodosum_M_contig870.14.1 ID=mRNA_A-nodosum_M_contig870.14.1|Name=mRNA_A-nodosum_M_contig870.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at A-nodosum_M_contig870:313575..315206+ (Ascophyllum nodosum dioecious)
ATGGTGCGCACGCTTAAAGGCAAGGCCAGCATACCACAGCGACGTGTTCT
AATCGCCCGGATGGAGGAACTTCTAGTGGACCTGCAAGGGTCGGTCGCCA
CCATGCTGACGGGCCAGTACGTCTCCATGACCACGGACGGATGGACGTCA
CGCGCCAACGAGTCCTACATTTCCTTCACCGTCGTGTACGTCAATGACGA
TTGGAAGATGGTGACGCTCGCGCTCAGCTGTTCGAAGAAACAAGGTTCGA
CGAAGGGGAAGACCTGGCTATATCCATCGAGACCATGA
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