mRNA_A-nodosum_M_contig870.14.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig870.14.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 163 bits (413), Expect = 2.500e-40 Identity = 82/143 (57.34%), Postives = 107/143 (74.83%), Query Frame = 3
Query: 255 GEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRIL-TDDAVLMHVGCTCHRIECVTALVFDGPGVKKSMALARAVVTRYTKSSQAAGRLQELCGIVGIIPLRVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVAP 680
GEDLA I +MI+ HGLTG V C TDCEPSMVKAGR+L + L H+GC+ HR+E T+ VF+G + ++A ARAVV RY +SSQ +GRL GI+ + PL V+QDVETRWWS+ +M+ERL+YL +A++LHES DN+AP
Sbjct: 122 GEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRSSQMSGRLAVFIGILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAP 263
BLAST of mRNA_A-nodosum_M_contig870.14.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 162 bits (410), Expect = 8.410e-40 Identity = 79/143 (55.24%), Postives = 106/143 (74.13%), Query Frame = 3
Query: 255 GEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRIL-TDDAVLMHVGCTCHRIECVTALVFDGPGVKKSMALARAVVTRYTKSSQAAGRLQELCGIVGIIPLRVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVAP 680
GEDLA + M++ H LTG V+ C TDCEPSM+KAGR+L D + + H+GC+ HR+E T+ VF+G + ++ LAR +V RY KSSQ A RL +LCGI+ + PL V+QDVETRWWST +MV RL+YL +A++LHES+D V P
Sbjct: 86 GEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCGILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHP 227
BLAST of mRNA_A-nodosum_M_contig870.14.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 159 bits (401), Expect = 4.690e-39 Identity = 74/142 (52.11%), Postives = 102/142 (71.83%), Query Frame = 3
Query: 255 GEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDDAVLMHVGCTCHRIECVTALVFDGPGVKKSMALARAVVTRYTKSSQAAGRLQELCGIVGIIPLRVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVAP 680
GEDL +++ MI +GLT V TDCEPSMVKAGR+L ++ + H+GC CHR+E +T+ F GPGV K++ALAR VVTRY SSQA+ RL+++ IV + +V+QDVETRWWST + + RL+ LRR + HE +D++ P
Sbjct: 95 GEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQMRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPP 236
BLAST of mRNA_A-nodosum_M_contig870.14.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 160 bits (405), Expect = 3.860e-38 Identity = 76/142 (53.52%), Postives = 101/142 (71.13%), Query Frame = 3
Query: 255 GEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDDAVLMHVGCTCHRIECVTALVFDGPGVKKSMALARAVVTRYTKSSQAAGRLQELCGIVGIIPLRVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVAP 680
GEDL +++ MI +GLTG V TDCE SMVKAGR+L ++ + H+GC CHR+E +T+ F GPGV K++ALAR VVTRYT SSQA+ RL+++C IV + V+QDVETRWWST + RL+ LRR + HE +D+ P
Sbjct: 51 GEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQVCDIVQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPP 192
BLAST of mRNA_A-nodosum_M_contig870.14.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 145 bits (367), Expect = 4.100e-35 Identity = 66/124 (53.23%), Postives = 89/124 (71.77%), Query Frame = 3
Query: 255 GEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDDAVLMHVGCTCHRIECVTALVFDGPGVKKSMALARAVVTRYTKSSQAAGRLQELCGIVGIIPLRVIQDVETRWWSTQSMVERL 626
GEDL +++ MI +GLTG V TDCEP MVKAGR+L ++ + H+GC CHR E +T+ F GPGV K++AL R VVTRYT SSQA+ RL+++C IV + +V+QDVETRWWST ++ +
Sbjct: 39 GEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDIVQVERKKVVQDVETRWWSTPREIDSI 162
BLAST of mRNA_A-nodosum_M_contig870.14.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE) HSP 1 Score: 120 bits (300), Expect = 1.260e-26 Identity = 55/102 (53.92%), Postives = 74/102 (72.55%), Query Frame = 1
Query: 1327 REEVTRYRATSGLAMEEAQESGKILYPDPLDWWRINAVKFPLLAALARRLLTIPASQAQSERVFSSAGQIVTQTRNRLSSENVELLVALKNIWSVVEEWQQS 1632
R E+T ++ ++G+ M E + G +Y DPLDWWR+ FP LA LARR+L IPA+QA+SER+FS AG IVT+ RN L+ VELLV L++ W +VEEW+QS
Sbjct: 195 RVELTAFKVSTGIKMYEEDKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVEEWEQS 296
BLAST of mRNA_A-nodosum_M_contig870.14.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 113 bits (282), Expect = 1.320e-22 Identity = 60/128 (46.88%), Postives = 83/128 (64.84%), Query Frame = 2
Query: 752 KKLESNNVTGSLVVPLICDLRTGLDSERKALQQPNPGASADVLAARVLLLPCVEALAKDFNNRFGDGSDILTFREGPRRQPQGFRKVQVMATALDPRCKMLYGVLPNEHEGVWQAVAMAAADIAKSTQ 1135
K++ + VTGSLVVP I DLR L+ L + P + A+V A ++PC++AL D+ +R+GDG +IL ++EGPRRQP GF+ V V+ATALDPR K+ YGV +E VW+ V A IA T+
Sbjct: 191 KRVIQDVVTGSLVVPFIYDLRNSLEDAIDDLVELPPDSDANVNTAWAAVMPCIKALRDDYIDRWGDGHNILIYKEGPRRQPGGFKPVHVLATALDPRTKIPYGVDEDEKADVWKLVQEEAVKIAVETR 318
BLAST of mRNA_A-nodosum_M_contig870.14.1 vs. uniprot
Match: A0A6H5JVE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE5_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 2.490e-19 Identity = 46/86 (53.49%), Postives = 63/86 (73.26%), Query Frame = 2
Query: 842 LQQPNPGASADVLAARVLLLPCVEALAKDFNNRFGDGSDILTFREGPRRQPQGFRKVQVMATALDPRCKMLYGVLPNEHEGVWQAV 1099
L + P + A+V AR ++PC++AL DF NR+GDG +IL ++EGPRRQP GF+ VQV+ATALDPR K+L+GV +E VW+ V
Sbjct: 144 LAELPPDSDANVNTARAAVMPCIKALRDDFINRWGDGRNILNYKEGPRRQPAGFKPVQVLATALDPRTKILHGVDEDEKADVWKLV 229
BLAST of mRNA_A-nodosum_M_contig870.14.1 vs. uniprot
Match: UPI000BBD9CAA (zinc finger BED domain-containing protein 1-like n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=UPI000BBD9CAA) HSP 1 Score: 86.7 bits (213), Expect = 1.480e-15 Identity = 45/95 (47.37%), Postives = 63/95 (66.32%), Query Frame = 1
Query: 1312 LPE*SREEVTRYRATSGLAMEEAQESGKILYPDPLDWWRINAVKFPLLAALARRLLTIPASQAQSERVFSSAGQIVTQTRNRLSSENVELLVALK 1596
LPE REEVT Y+ TS ++++E DPL WW+ NA K+P +A LA+R L +P + SERVFS+AG IVT +R+RL ENV+ L+ ++
Sbjct: 145 LPETIREEVTSYKETSCISVDE----------DPLAWWKTNAHKYPHVAKLAQRDLAVPGTSVPSERVFSTAGDIVTASRSRLLPENVDKLIFMQ 229
BLAST of mRNA_A-nodosum_M_contig870.14.1 vs. uniprot
Match: A0A3N0YQ94_ANAGA (Zinc finger BED domain-containing protein 1 n=1 Tax=Anabarilius grahami TaxID=495550 RepID=A0A3N0YQ94_ANAGA) HSP 1 Score: 83.6 bits (205), Expect = 5.250e-14 Identity = 42/96 (43.75%), Postives = 59/96 (61.46%), Query Frame = 1
Query: 1327 REEVTRYRATSGLAMEEAQESGKILYPDPLDWWRINAVKFPLLAALARRLLTIPASQAQSERVFSSAGQIVTQTRNRLSSENVELLVALKNIWSVV 1614
+EEV Y A SG+ ++ DPL WW+ N K+P +A +AR L +P S SERVFS+AG IVT R+ LS +NV++LV LK I+ ++
Sbjct: 78 KEEVASYLAASGITVDG----------DPLTWWKSNECKYPHIAKMARCYLAVPGSSVPSERVFSTAGDIVTAKRSTLSLDNVDILVFLKKIFEII 163 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig870.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig870.14.1 >prot_A-nodosum_M_contig870.14.1 ID=prot_A-nodosum_M_contig870.14.1|Name=mRNA_A-nodosum_M_contig870.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=96bp MVRTLKGKASIPQRRVLIARMEELLVDLQGSVATMLTGQYVSMTTDGWTSback to top mRNA from alignment at A-nodosum_M_contig870:313575..315206+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig870.14.1 ID=mRNA_A-nodosum_M_contig870.14.1|Name=mRNA_A-nodosum_M_contig870.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1632bp|location=Sequence derived from alignment at A-nodosum_M_contig870:313575..315206+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig870:313575..315206+ >mRNA_A-nodosum_M_contig870.14.1 ID=mRNA_A-nodosum_M_contig870.14.1|Name=mRNA_A-nodosum_M_contig870.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at A-nodosum_M_contig870:313575..315206+ (Ascophyllum nodosum dioecious)back to top |