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Homology
BLAST of mRNA_A-nodosum_M_contig1124.18.1 vs. uniprot
Match: A0A6H5KZA5_9PHAE (LITAF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZA5_9PHAE) HSP 1 Score: 159 bits (401), Expect = 5.210e-44 Identity = 84/164 (51.22%), Postives = 106/164 (64.63%), Query Frame = 2
Query: 239 LPTAEGVFVGDPVAQSLYPNPAP-----VIT--PVSHQYNLNSQASQGRPPSGVSITTGGHHVVTSAAGGMHHTVFLVD--PRG--FYAWGRVPQAFVCNSCGFSGMTSAFTDPCSNAPILAAACCCLVGFWPCSFIPFLIPSLRDTVHQCPGCGLTVGRSQQF 697
LPTA+G+FVGDPV+QS + AP VIT P S+ + G+++ +G HTV +++ P G F WGR PQAFVC +CGF+G++ TDPCSN PILAAACCCLVG WPCSF+PFLIP LRDTVH+CP C ++VGRS+QF
Sbjct: 90 LPTAQGIFVGDPVSQSTPYHAAPPAHATVITSAPASYDHVAAXXXXXXXXXXGIAVPSGXXX---------QHTVIVMNAPPPGHQFGEWGRQPQAFVCRACGFTGLSLTMTDPCSNIPILAAACCCLVGCWPCSFVPFLIPELRDTVHRCPNCHVSVGRSRQF 244
BLAST of mRNA_A-nodosum_M_contig1124.18.1 vs. uniprot
Match: UPI0018DA2B19 (proline-rich protein 2-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018DA2B19) HSP 1 Score: 56.2 bits (134), Expect = 8.560e-6 Identity = 28/71 (39.44%), Postives = 37/71 (52.11%), Query Frame = 2
Query: 482 VPQAFVCNSCGFSGMTSAFTDPCSNAPILAAACCCLVG---FWPCSFIPFLIPSLRDTVHQCPGCGLTVGR 685
+PQ C +C + T + +L C + FWP +FIPF IPSL+DTVH CP C T+GR
Sbjct: 137 LPQIMQCTNCSKTVTTQTSKHVGAAVWVLFGWICLITVWFCFWPLAFIPFCIPSLKDTVHTCPECKFTLGR 207
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Seed ortholog | 45351.EDO42963 |
| PFAMs | zf-LITAF-like |
| Model size | 851 |
| Max annot lvl | 2759|Eukaryota |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Evalue | 3.27e-07 |
| EggNOG OGs | 2CHAU@1|root,2S3NX@2759|Eukaryota |
| Ec32 ortholog description | LPS-induced tumour necrosis factor alpha factor |
| Ec32 ortholog | Ec-18_003300.1 |
| Description | Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins. |
| Cds size | 696 |
| COG category | S |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680866523.959076-UTR-A-nodosum_M_contig1124:162949..163097 | 1680866523.959076-UTR-A-nodosum_M_contig1124:162949..163097 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig1124 162950..163097 - |
| 1680866523.998687-UTR-A-nodosum_M_contig1124:169847..169854 | 1680866523.998687-UTR-A-nodosum_M_contig1124:169847..169854 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig1124 169848..169854 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680866523.9700806-CDS-A-nodosum_M_contig1124:163097..163259 | 1680866523.9700806-CDS-A-nodosum_M_contig1124:163097..163259 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig1124 163098..163259 - |
| 1680866523.978132-CDS-A-nodosum_M_contig1124:163647..164018 | 1680866523.978132-CDS-A-nodosum_M_contig1124:163647..164018 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig1124 163648..164018 - |
| 1680866523.9885817-CDS-A-nodosum_M_contig1124:169684..169847 | 1680866523.9885817-CDS-A-nodosum_M_contig1124:169684..169847 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig1124 169685..169847 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1124.18.1 >prot_A-nodosum_M_contig1124.18.1 ID=prot_A-nodosum_M_contig1124.18.1|Name=mRNA_A-nodosum_M_contig1124.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=232bp
MPRADGYKTLPDDNDAGERTEDRGEAEADGAPTRREGTAAGAAPSSAGAG STEAATAKDAGSEKQEGARKGDGDLGGLPTAEGVFVGDPVAQSLYPNPAP VITPVSHQYNLNSQASQGRPPSGVSITTGGHHVVTSAAGGMHHTVFLVDP RGFYAWGRVPQAFVCNSCGFSGMTSAFTDPCSNAPILAAACCCLVGFWPC SFIPFLIPSLRDTVHQCPGCGLTVGRSQQFR* back to topmRNA from alignment at A-nodosum_M_contig1124:162950..169854- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_A-nodosum_M_contig1124.18.1 ID=mRNA_A-nodosum_M_contig1124.18.1|Name=mRNA_A-nodosum_M_contig1124.18.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6905bp|location=Sequence derived from alignment at A-nodosum_M_contig1124:162950..169854- (Ascophyllum nodosum dioecious) TCGAGAGATGCCTCGCGCAGACGGCTACAAGACCCTTCCCGATGATAACG
ATGCAGGCGAGCGTACGGAAGACCGAGGTGAGGCGGAGGCTGACGGCGCT
CCCACACGGCGAGAGGGCACGGCCGCTGGTGCCGCACCATCGTCGGCTGG
TGCGGGATCAACAGAAGCAGGTTAGCCACGTGCACCACGATTGCTATGGA
CCCGAGGCACTACGGTGGCGGCTACAGTCCGGTCAAATATTCTTTTAACA
GCAGAAGGGCACACTATAAATACTACAGCTTAGACATCTGCTACAACACA
TTTTTCATAAATGCAGAACGCAGTACTCCGTAATTCGTGCGATGATGGGC
CCATATTCAGGTCGTCGACTCAACACGCGGGCTCGTGCACCTGTAACGTA
GGAACTCTATGCCGAAGGCAAAACAAGTAGCTCTTGTACGAGAAGTCAAC
CGCACTCCCCGGGGCAATGACCGTTATTGACTCGTATAGTATCGCAAAAT
ATTTTCGACGGGAAATTTCCATAGAAGGAGCTGGAGACCTTTAGAGCGGA
GAGCGGATCGGTCCTCGCTACGATACCAGTATAAAATTGAGATGTGGTTG
CTTTTGTCAATGCCGGGGATGTGTAGAGAACTACTCTTGATTTGAGTCAT
CGGGAGAAAGTGCGATTACTGTCTTGTAAACAAAAAAGTGCTTGTTTCAG
ATCCAGGCCAAAAGAGAAAACTCCGAGGGCATCCCCACTATCCCGGAGAA
TTCCTATTTGAGAGAAAGAGAGTAACGCACCTTGACTGTTCCAACAGACA
AGACTACTCTACTGCCTCGGAAAGGTGTCCAACGTACCTTGGCTGTTCCA
GCAGACAAGACTACTCTACTGCCTCGGGCAGATGTCCACTACGTGCAGGT
AGTAGGCGTGGGGAAAGAAAGGCGCACAAAAACTGGTCCACAGTGATTCC
TGTAAAGGCAGCACCCGTCTCTGGAACTATCTTGAGGACCACTGGCCCTG
AGCCGGCGGACTATCGGCAGTGAATGCCATTGGCACGCAATTGCGTAACT
TGATTAGCTTGGGACTGACCCGATGGCGGTTGACGGTATAAGATTGGACG
CCGTCGCAAAAAGCGGGAGGAATCCCGCGAGTAAGCACCATATTCAGCCA
GAATGTGGAGAATGAGCAAGCTGACGCGGGACGGGACGGCCGAACCTGTC
TCACGAGACCAAATTCTCTGGCGCGATGGGGGAGAGAAAAAAAACTTTTT
CCCTTTTCAGTTGACCACGAGCAGGATCGGCAAACATACACGGTTGATCC
ATACTCTTCTATAAGGGATCACCGTACATACATGTATGGTCACACATATA
CAACCGGGTAAGGTTGCCAATCCTGCTCGTGGTCAGCTGAACAGGGAAAA
TTAAGCGTTCGCCCCTGAGAATTTGATCTCGCGAGACGGGTTCGGCAGTT
CCGCCCCGCGTCAGCCTGCTCATCTCCATGCTCAGGCTGGATCTGGTGCT
TACCTACGGGATTCCTCCCGAGTTCCGCGGTGGCGTCCATCTATTTATTT
GAAACCGCCATACGCCATCAGGTCAGCCCCGAGTTTATCGGGTCACGCAA
TTGCGTACCGATGGCGTTCACTGCCGACAGTTCACTGCCGACAGTCCGCC
GGCACAGGGCCAGTAACCCTCAAGGTAGCTCCGAACGAGTGCTGCCTTGG
CAGGTCACCATGGACCAATTAATATGCGCCTCTTTTTTACCTGGTACTGA
TCTTCACTGCCCATCCCTCGGGGATTCAACAATGGCTTATGAACAGATAC
TGATGTCCTACTCGTACTAAACTAACTAGACTAATAATACTGCTCAAGCC
GACATCTTGAGAATTTTAGATTTCTATATGGTTCAGAACATCAAAACATA
TATCAGTATAAAGAGTTCTTCCCGAAACTCCTATTAATACGTGAATACGA
TAAAAATAGTTTATTACTCCGGAGTAATATTTATCCCAAGACATTGCACT
AGTTTTTTTGTTTTTTGTTTTCTTTAATCTCACTTATAGCCGATAGACCT
CATCATTACCATCTTGCCTGTGGTCACAAAGGATCTTCCCATCTCTCCCC
GGTCCACGCCTTACAATTTTTTATGGCGATGCAAGTTCAGCACTCTTACA
ACTCGTCAACCAATGGTTGAATTTTACTTACTCACGTTCCCACGCTTTCC
GTTACGAAAGAAAGAACACAAATCCTACTTTGGTAAGAATCGAACTCACG
ACTTCCGCACTAGCAGATGTGCAGGTTACCTACTAGACCACTCGGGCGAC
GATAACAAGACTGTAATTTACTAAATTTTACCCCCACAACATGGTAACCT
GAACTTATAAGCTAGCTCCAAGCGAACACCTTCGCTCAGGCTTGGGTCGA
TAGTAGTGTGTCTCTCGTGCTGGTGTTCCTGCATCGCGATTGGTGCAAAA
TGTCGTTGTCGTCGTTGTTTCGGCACCAACCGTTGTAAGGCTACCAACCC
TGATCAGCTGAACAGGGGAAATAATTTGTGCTCGCGGGACAGGTTCGGCC
GTCCCGTTCCGGGTAAGCCCGGTCACTCTCCGCACCCAGAGGCTGAATCT
GGTCCTTACTCGCGGGTTCCTCCCCAACCCCCCGACGGTGTGCATCTACA
TCTTCAACCGCCCATCAGACCTGTCCCTATCAATAGCTTTATCTGGTCAC
GCAAGAGCGAACCCATGGCGTTCACCGTGGAGAGTGAACCTACGCAGTGC
CAGTATTTGAATAATAATGGGTGTTGGCTATTCAGGTAACCGCGTGAACC
GCTTTATGTGTGTCTCTCTCTTCCCACACCGACATGCCATGGGAATGTGT
GTGTTGCAGGGTACTTGCAGAGCAAGTATAGTGTACTAATAGTGTGCTTC
TCCTCGACAGTCTACTGTTAACAGAAAAAAATCTGAACGCATCGAAACCT
TCCGAGCGCTTACACCCCCGTGCGACGATCCTTGGGTGTAACCCCACTAA
GTCTCATGGAGTTTTGGTTCCAAGCCACCATACCCACCCAAACGTTTCGA
CCGTACAAGTATCCCTCCCGGACGGTGTGGATGGTCGGAAGGTTCAGATT
TTTCTGGTGGAAATGAGATTATAATTGAGATTTTTCTAGAAATGAGATTT
TGTTCTATAATTGAGATTTTTCTATAATTGAGATTTTCTAGAAATGAGAT
TTTGTTCTATAATTGAGATCTTTCTAGAAATGAGATTTTGTTCTATAATT
GAGATTTTTCTATGATGGAGATTTTCTAGAAATGAGATTTTGTTCTATAA
TTGAGATCTTTCTAGAATTGAGATTTAGTTGTACCCCTCCGTGATCCGTC
GCGACCGGGTCAATCAACAGCAGTACTCGTGTAATATAGGGGATAACCCC
ACCGTCATGCCATAGACTTACACCAACTGCCATATGGGGCCAACACGGGA
AGCACGGTACATGCTCAAATGTTTTAGGAACTGGGTAACTTTCGAGCGGA
AACCCCGCGCGGAGAGGCGTTCAATTTTGTTGATTTTTACGGAAATTGAC
TGTACAAGACTTTTAAAAGTAATGCAACAGATTTGCGACCAGAGTGCTGT
AGCCAAATGCCTTCAACACTATATTGGCGGAGTTTGGGACAGCGGATGAA
CAGTACAAAGTGGATGTACAAAGTAGATGCACAAAGTGTGATTCTACGAA
AAGCGACGGGAACCCTGTCTTGCGATCGGTTTAAACACAGCCGAAAATCC
CCAAATTTGGAAGCGTTCCGAACTTTGGAATGTTGATCGTAGGCGTAATT
TCCAATATTCGGAAACGAACTGACCTCCGAGTAACGATTGCCAAAAAATG
AACCGTTCTAAATTTTGGAGTGGTGTCTTTTGAAGATTACTGCTGCCGAG
GGCTTATACGAACACCCTCTTGTTGAATAGGAGGTTCTTGGGGACCTTCT
TAGGAAGGTGTATTACAAAAACATCAATATCACACCGGCTACGAGCCACT
TTATGACCCTGAAGTCAGCATCGACTGTGAAGACCACCTATTCAATATTA
CCTAAAAATCCGAAGCACTCGTGTCGTAGCGTGGTCTGGAAAGCTTTCAA
CTTGTGGCTTGTGCTCTCTGACGGCGAGCAGGCCGCCTGAACAGTCCCAG
TTTTCTCCGGTAGTCCCTCCCACGCCCATCGTCACTGTAACGCCCACGGG
CCATATAGCCTTTTTGCACTAAACTTGGCATGTCCGTTGCCATTCAGTGA
GCGGTCATGGGGCTTAAAGAGGGTGGGTCAATATTTTCTCTACACAGCCG
AAGTCATCGATGCTTGCATTGAACTGATCCGTTGGGGAAAGGAGCTTCCC
GGTCAAACCACTCTAATCGAGCATTTACTGTTTATACTATTTGTCTAATT
GCTGAAACACTGTTTTAAGCTAGTAATATTTGTCAAACTCTAGACCCTTC
GTTTCCAATTTTTCAGCTTTTGGAAGATAAGCTTGTGCGTCTAAACCGAA
CTTTACGACTCAGTATAAGTAGCGGCATTTTTCCCGAGTACACTATCTTT
GTCATCATTTGAGCAATCCGACAATAGGGGGGGGGGAAGGGATGGGGGAA
AATATTCCCTATTTCAGGGGGGGGTCGTCAAAAGAGCCCCTCCCGGGGAC
ATATTTTGCACATCCCCTCCCCTCCTTTTCGTTGTATCGCTCATTTCTTA
CACTGGTACGAGTTGTACTGGCAGTACGAAAGTCAGATTGTATTTTATGT
ATGGTCAGCACTTTCAGCAGAGTGTGGATCAACCGTGTATGGTTGCCAAT
CCTGCTCGTGATCAGCTGAACAGGGAAAACATTTTTTCCCCTGTCCCCGT
TCTCGCCTGAGAATTTGGTCTTGCGAGACGGGTTCGGTCGTACCGCCCCG
CGTCAGCCCGCCCATTCTCCACACTCAGGCTGAATCTGATTGGTTAATGC
TTACTCACGGGATTCCTCCCACTTTCCGCGACGGCGTCCATTTATTTATT
CAAACCGTCAACCGCCATCGAGTCAGTCCCGAATTTATCAGATCACGCAA
TTGCGTATCGATGGCGTTCACTGCCGAGAGTCCGCCGGCACAGTAGGCCA
GCAGTCCTCGGGGCATTTCGAGTAACGGATGCTGCCTTTTCAGTTTTCAC
CCAAGCATCAATTTTTCGTTCCTCTCTTTTCCCACACCCACTATTGGCAA
AAGAAGCATGTAGGTAGGTGAACGCAAAAACGCGTTCACAGAGACCCTGT
CGCACTTGTGGAGTTCTGCTCACGTTGACCACGGCACATTTTGATCGGTA
CATATTCCCACACCGTTTTCGGCGATTACTCCTCGAACCAAGTGTTGGCT
ACATAGAGAGTAGTCTCTAGTAGTGGTGCTCTTATTACACCTCTAACCTC
CGACACGCATGACGGATGCAGAGCCTGATGGTGGGGCATTGCAAGTATCA
CGGTGGTGGTTTAACGCAGAGGCAAACGGGACTTTTCGATACTCAAAGCG
CTGTTTCTTGGGGACACAAATCCCCGAATTACGTTATACGCTCCTCTTTT
TTTCTTGTTGTGCGAAATGACACGAGCCCTGTTAGGCCCCTCTTCCTCCG
AGGGACATGTGAAGAGGGAAAAGCAGGCGATACGAATAATTCTACGCCAT
CATTTGAATGCTACCAACCGCAGTTTTGTACGTAGGGTACTGTAATTACT
TACACATTTTTGTTGTGCTAATAAAATAGTGTTTGTACCGCCAAAACGAA
AAAACTCACGAGGCCTTTTAACTCTCCCCGCCCTCCCCGCCTCTCACAAC
CGCAAAACACTCTCGATCCCGCAACATCTCTCACAGCTACAGCGAAGGAT
GCCGGCAGCGAAAAACAGGAGGGCGCACGCAAGGGAGACGGCGACCTAGG
CGGGCTTCCGACGGCAGAGGGCGTTTTCGTCGGGGATCCCGTCGCGCAGT
CTCTCTACCCCAACCCCGCTCCTGTTATCACTCCAGTGTCTCACCAATAT
AACTTGAACTCCCAAGCGAGCCAGGGACGGCCGCCGAGCGGGGTGTCTAT
CACCACCGGGGGTCATCACGTTGTGACCAGTGCTGCTGGTGGAATGCACC
ATACGGTGTTCTTGGTCGACCCGCGCGGATTCTACGCGTGGGGGCGCGTG
CCGCAAGCGTTCGTGTGCAACAGCTGCGGATTCTCCGGGATGACAAGTGC
TTTCACGGTAAGGAGCGCTGTAGGCCTGGCGAAACGGAGTTGGCGAAGCT
ACATACTTTTCACTGTTTTGACCGCTGCGTTTGAACCTGATCCTCTTCGC
TGAATCCCGCGTTTTCGAGAGTCAAGTGCTTACAAGTAGCGGTGGGTTGC
GCCCGAGATCGAAGAAAACGACGTTCTAGAAGCAGCAGTACACATTTTTC
TCCCTCGTCAACGAAAGATGCTTGAACGGCTCCTTGAGGAAGTACACCAC
ACAAGCGAAGCCTTGGGCACCCGAGAAGGGTAGTTCCTCGGGGAGCATTG
GCGCTAATAACAAGTCTATCGTAATCGTTTCTTCTCTCGATTGACTCTTT
CTCTTCTCCATCCCGATCGTGCGATTCAACCGTTTGGCGTCCCAGGACCC
TTGCTCTAATGCCCCCATCCTGGCAGCGGCGTGCTGTTGCCTCGTGGGAT
TCTGGCCCTGCTCCTTCATCCCCTTCCTCATCCCGAGTCTAAGGGACACG
GTGCACCAGTGCCCGGGGTGCGGACTTACCGTGGGCAGGTCCCAGCAGTT
CCGCTGAAGCCGTCACGGTTTCGACCGATCGCTCCAAACGACTCGAGCAA
TCGAATGTTAACAACTATGTACGCACGTAAATCGGTTAGACTATGACAGC
GGGTCACAGATAATCTAGGCATTAAGTTCGTCTTTTGAAGTTCTACTGTA
CATAA back to topCoding sequence (CDS) from alignment at A-nodosum_M_contig1124:162950..169854- >mRNA_A-nodosum_M_contig1124.18.1 ID=mRNA_A-nodosum_M_contig1124.18.1|Name=mRNA_A-nodosum_M_contig1124.18.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at A-nodosum_M_contig1124:162950..169854- (Ascophyllum nodosum dioecious) ATGCCTCGCGCAGACGGCTACAAGACCCTTCCCGATGATAACGATGCAGG CGAGCGTACGGAAGACCGAGGTGAGGCGGAGGCTGACGGCGCTCCCACAC GGCGAGAGGGCACGGCCGCTGGTGCCGCACCATCGTCGGCTGGTGCGGGA TCAACAGAAGCAGCTACAGCGAAGGATGCCGGCAGCGAAAAACAGGAGGG CGCACGCAAGGGAGACGGCGACCTAGGCGGGCTTCCGACGGCAGAGGGCG TTTTCGTCGGGGATCCCGTCGCGCAGTCTCTCTACCCCAACCCCGCTCCT GTTATCACTCCAGTGTCTCACCAATATAACTTGAACTCCCAAGCGAGCCA GGGACGGCCGCCGAGCGGGGTGTCTATCACCACCGGGGGTCATCACGTTG TGACCAGTGCTGCTGGTGGAATGCACCATACGGTGTTCTTGGTCGACCCG CGCGGATTCTACGCGTGGGGGCGCGTGCCGCAAGCGTTCGTGTGCAACAG CTGCGGATTCTCCGGGATGACAAGTGCTTTCACGGACCCTTGCTCTAATG CCCCCATCCTGGCAGCGGCGTGCTGTTGCCTCGTGGGATTCTGGCCCTGC TCCTTCATCCCCTTCCTCATCCCGAGTCTAAGGGACACGGTGCACCAGTG CCCGGGGTGCGGACTTACCGTGGGCAGGTCCCAGCAGTTCCGCTGA back to top
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