prot_A-nodosum_M_contig1124.18.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1124.18.1
Unique Nameprot_A-nodosum_M_contig1124.18.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length232
Homology
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BLAST of mRNA_A-nodosum_M_contig1124.18.1 vs. uniprot
Match: A0A6H5KZA5_9PHAE (LITAF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZA5_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 7.400e-45
Identity = 84/164 (51.22%), Postives = 106/164 (64.63%), Query Frame = 0 
Query:   78 LPTAEGVFVGDPVAQSLYPNPAP-----VIT--PVSHQYNLNSQASQGRPPSGVSITTGGHHVVTSAAGGMHHTVFLVD--PRG--FYAWGRVPQAFVCNSCGFSGMTSAFTDPCSNAPILAAACCCLVGFWPCSFIPFLIPSLRDTVHQCPGCGLTVGRSQQF 230
            LPTA+G+FVGDPV+QS   + AP     VIT  P S+ +             G+++ +G             HTV +++  P G  F  WGR PQAFVC +CGF+G++   TDPCSN PILAAACCCLVG WPCSF+PFLIP LRDTVH+CP C ++VGRS+QF
Sbjct:   90 LPTAQGIFVGDPVSQSTPYHAAPPAHATVITSAPASYDHVAAXXXXXXXXXXGIAVPSGXXX---------QHTVIVMNAPPPGHQFGEWGRQPQAFVCRACGFTGLSLTMTDPCSNIPILAAACCCLVGCWPCSFVPFLIPELRDTVHRCPNCHVSVGRSRQF 244
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BLAST of mRNA_A-nodosum_M_contig1124.18.1 vs. uniprot
Match: UPI0018DA2B19 (proline-rich protein 2-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018DA2B19)

HSP 1 Score: 56.6 bits (135), Expect = 3.600e-6
Identity = 28/71 (39.44%), Postives = 37/71 (52.11%), Query Frame = 0 
Query:  159 VPQAFVCNSCGFSGMTSAFTDPCSNAPILAAACCCLVG---FWPCSFIPFLIPSLRDTVHQCPGCGLTVGR 226
            +PQ   C +C  +  T       +   +L    C +     FWP +FIPF IPSL+DTVH CP C  T+GR
Sbjct:  137 LPQIMQCTNCSKTVTTQTSKHVGAAVWVLFGWICLITVWFCFWPLAFIPFCIPSLKDTVHTCPECKFTLGR 207
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1124.18.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZA5_9PHAE7.400e-4551.22LITAF domain-containing protein n=2 Tax=Ectocarpus... [more]
UPI0018DA2B193.600e-639.44proline-rich protein 2-like n=1 Tax=Patiria miniat... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006629LPS-induced tumour necrosis factor alpha factorSMARTSM00714litafcoord: 160..229
e-value: 1.0E-6
score: 38.3
IPR006629LPS-induced tumour necrosis factor alpha factorPFAMPF10601zf-LITAF-likecoord: 159..227
e-value: 7.8E-13
score: 48.5
IPR006629LPS-induced tumour necrosis factor alpha factorPROSITEPS51837LITAFcoord: 143..229
score: 13.207715
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..81
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 137..147

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1124contigA-nodosum_M_contig1124:163098..169847 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1124.18.1mRNA_A-nodosum_M_contig1124.18.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1124 162950..169854 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1124.18.1 ID=prot_A-nodosum_M_contig1124.18.1|Name=mRNA_A-nodosum_M_contig1124.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=232bp
MPRADGYKTLPDDNDAGERTEDRGEAEADGAPTRREGTAAGAAPSSAGAG
STEAATAKDAGSEKQEGARKGDGDLGGLPTAEGVFVGDPVAQSLYPNPAP
VITPVSHQYNLNSQASQGRPPSGVSITTGGHHVVTSAAGGMHHTVFLVDP
RGFYAWGRVPQAFVCNSCGFSGMTSAFTDPCSNAPILAAACCCLVGFWPC
SFIPFLIPSLRDTVHQCPGCGLTVGRSQQFR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006629LITAF
IPR000408Reg_chr_condens