mRNA_A-nodosum_M_contig1040.16.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1040.16.1
Unique NamemRNA_A-nodosum_M_contig1040.16.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 1.640e-32
Identity = 137/440 (31.14%), Postives = 201/440 (45.68%), Query Frame = 1
Query:  313 RLFGNLLNPKPDKLRLDTIETV--------THVLRVEPA*NKLTAALRSAANAKAVGLDELQVELLQLELYDRAPGVPVNDQRL------VWHQRKVPQR*RDAVMKMMRK-------NERRVRQLCRHL---------TRSTRG*GPSQNTRYETKYLRPHGSTTNVMFAVRRLQELERKAHVPLFIRFCPPRTSLEGACPLRNNAADYESNSPISQNESLRAGL*RSILGVIRGGTVAL-SRMRG--------FPA--GVQRRRTRG-----------------RFSGDTDILADISHLQKQPSNVGPETALECARRAIWGML*ADDACILSRSPRGLERMMAVFVEVFGPFGLAISESKMETMCMSI------IRAPVAQVVFNATGQQCRQTTSFTYLGGAVIETPNLPAKFDRRIRAGWISFGR*TRKLYDRPKA 1440
            R F  LLN K   L  D +E V        T  L   P   ++ AA +   N KAVG D L  ELL+++  D     PV  +RL      VW+  ++PQ  +DA++K++ K       N  R   L  H+          R +     ++    E    RP  ST  ++F VRRLQEL R+  +PL++ F   + + +        + D E    +      RAG+   ++ VIR   V + +R+R         FP   G+++  +                   RFS D  I+ D+ +L+++      E  L+  RRA+WGML ADDA ++S+S  GL RMM + VEVF  FGL +SE K ET+ M +             +   A GQ+  QTT F YLGG V E  +L  + + R +A W    R   +L+DRP A
Sbjct:  763 RFFNTLLNSKSPTLNPDVVEQVMQRPATRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDE----PVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLHKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYD--------SVDRE----LLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEIIVTRFSQDEVIVRDLVYLKEEERR--GEGLLDRVRRAVWGMLYADDAGVVSKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGA 1184          
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 2.640e-32
Identity = 137/440 (31.14%), Postives = 201/440 (45.68%), Query Frame = 1
Query:  313 RLFGNLLNPKPDKLRLDTIETV--------THVLRVEPA*NKLTAALRSAANAKAVGLDELQVELLQLELYDRAPGVPVNDQRL------VWHQRKVPQR*RDAVMKMMRK-------NERRVRQLCRHL---------TRSTRG*GPSQNTRYETKYLRPHGSTTNVMFAVRRLQELERKAHVPLFIRFCPPRTSLEGACPLRNNAADYESNSPISQNESLRAGL*RSILGVIRGGTVAL-SRMRG--------FPA--GVQRRRTRG-----------------RFSGDTDILADISHLQKQPSNVGPETALECARRAIWGML*ADDACILSRSPRGLERMMAVFVEVFGPFGLAISESKMETMCMSI------IRAPVAQVVFNATGQQCRQTTSFTYLGGAVIETPNLPAKFDRRIRAGWISFGR*TRKLYDRPKA 1440
            R F  LLN K   L  D +E V        T  L   P   ++ AA +   N KAVG D L  ELL+++  D     PV  +RL      VW+  ++PQ  +DA++K++ K       N  R   L  H+          R +     ++    E    RP  ST  ++F VRRLQEL R+  +PL++ F   + + +        + D E    +      RAG+   ++ VIR   V + +R+R         FP   G+++  +                   RFS D  I+ D+ +L+++      E  L+  RRA+WGML ADDA ++S+S  GL RMM + VEVF  FGL +SE K ET+ M +             +   A GQ+  QTT F YLGG V E  +L  + + R +A W    R   +L+DRP A
Sbjct:  476 RFFNTLLNSKSPTLNPDVVEQVMQRPATRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDE----PVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYD--------SVDRE----LLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEIIVTRFSQDEVIVRDLVYLKEEERR--GEGLLDRVRRAVWGMLYADDAGVVSKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGA 897          
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 3.110e-32
Identity = 137/440 (31.14%), Postives = 201/440 (45.68%), Query Frame = 1
Query:  313 RLFGNLLNPKPDKLRLDTIETV--------THVLRVEPA*NKLTAALRSAANAKAVGLDELQVELLQLELYDRAPGVPVNDQRL------VWHQRKVPQR*RDAVMKMMRK-------NERRVRQLCRHL---------TRSTRG*GPSQNTRYETKYLRPHGSTTNVMFAVRRLQELERKAHVPLFIRFCPPRTSLEGACPLRNNAADYESNSPISQNESLRAGL*RSILGVIRGGTVAL-SRMRG--------FPA--GVQRRRTRG-----------------RFSGDTDILADISHLQKQPSNVGPETALECARRAIWGML*ADDACILSRSPRGLERMMAVFVEVFGPFGLAISESKMETMCMSI------IRAPVAQVVFNATGQQCRQTTSFTYLGGAVIETPNLPAKFDRRIRAGWISFGR*TRKLYDRPKA 1440
            R F  LLN K   L  D +E V        T  L   P   ++ AA +   N KAVG D L  ELL+++  D     PV  +RL      VW+  ++PQ  +DA++K++ K       N  R   L  H+          R +     ++    E    RP  ST  ++F VRRLQEL R+  +PL++ F   + + +        + D E    +      RAG+   ++ VIR   V + +R+R         FP   G+++  +                   RFS D  I+ D+ +L+++    G    L+  RRA+WGML ADDA ++S+S  GL RMM + VEVF  FGL +SE K ET+ M +             +   A GQ+  QTT F YLGG V E  +L  + + R +A W    R   +L+DRP A
Sbjct:  967 RFFNTLLNSKSPTLNPDVVEQVMQRPATRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDE----PVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYD--------SVDRE----LLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEIIVTRFSQDEVIVRDLVYLKEEERRGGG--LLDRVRRAVWGMLYADDAGVVSKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGA 1388          
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 5.030e-32
Identity = 138/444 (31.08%), Postives = 193/444 (43.47%), Query Frame = 1
Query:  304 R*TRLFGNLLNPKPDKLRLDTIETVTHV--------LRVEPA*NKLTAALRSAANAKAVGLDELQVELLQLELYDRAPGVPVNDQRL---VWHQRKVPQR*RDAVMKMMRK-------NERRVRQLCRH--------LTRSTRG*GPSQNTRYETKY-LRPHGSTTNVMFAVRRLQELERKAHVPLFIRFCPPRTSLEGACPLRNNAADYESNSPISQNESLRAGL*RSILGVIRGGTVALSRMRGFPAG-------VQRRRTRG---------------------RFSGDTDILADISHLQ--KQPSNVGPETALECARRAIWGML*ADDACILSRSPRGLERMMAVFVEVFGPFGLAISESKMETMCMSII--------RAPVAQVVFNATGQQCRQTTSFTYLGGAVIETPNLPAKFDRRIRAGWISFGR*TRKLYDRPKA 1440
            R  + F  LL+ K   L  D IE VT          L   P   ++  A +   N KA G D L  ELL+++  D  P V  +   +   VW+   +P+  +DA +K++ K       N  R   L  H        +T        + N   E +   RP  ST +++F VRRLQEL R+  +PL++ F              N A D      + +  + RAG+   ++ VIR     +    G   G       V +   +G                     RFS D  +L  +  L+  K  +  G ET L+  RRA+WGM  ADDA ++SRS  GL RMM + VEVFG FGL +SE K ET+ M            AP   +   A GQ+  QTT F YLGG V E  +L  + + R R  W    R  R+L+DRP+A
Sbjct:   42 RWAKFFSTLLDTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLKID--DDEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKQGDRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGCRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVD-----------LNKAYDSVDREMVWKVLA-RAGIPAKLIEVIRQFHDGMRARAGMDDGELSDWFFVTQGAGQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEAGGGEETPLDRVRRAVWGMSYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPTTISQTAPPPPLTIKAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQA 471          
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6H5L1H2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1H2_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 7.430e-31
Identity = 138/444 (31.08%), Postives = 191/444 (43.02%), Query Frame = 1
Query:  304 R*TRLFGNLLNPKPDKLRLDTIETVTHV--------LRVEPA*NKLTAALRSAANAKAVGLDELQVELLQLELYDRAPGVPVNDQRL---VWHQRKVPQR*RDAVMKMMRK-------NERRVRQLCRH--------LTRSTRG*GPSQNTRYETKY-LRPHGSTTNVMFAVRRLQELERKAHVPLFIRFCPPRTSLEGACPLRNNAADYESNSPISQNESLRAGL*RSILGVIR---GGTVALSRMRGFPAGVQRRRTRG-------------------------RFSGDTDILADISHLQ--KQPSNVGPETALECARRAIWGML*ADDACILSRSPRGLERMMAVFVEVFGPFGLAISESKMETMCMSIIRAPVAQ--------VVFNATGQQCRQTTSFTYLGGAVIETPNLPAKFDRRIRAGWISFGR*TRKLYDRPKA 1440
            R  R F  LLN K   L  D IE  T          L   P   ++  A +   N KA G D L  E+L+++  D  P V  + Q +   VW+   +P+  +DA MK++ K       N  R   L  H        +T        + N   E +   RP  ST +++F VRRLQEL R+  +PL++            C +  N A    +  +      RAG+   ++ VIR    G  A  RM           T+G                         RFS D  +L ++  L+  K  +  G ET L+  R A+WGML A+DA ++SRS  GL RMM + VEVFG FGL +SE K ET+ M     P           +   A GQ+  QTT F YLGG V E  +L  + + R R  W    R   +L+DRP+A
Sbjct:   42 RWARFFSTLLNTKLPTLNPDIIERGTQRPATRDTQRLGDVPELEEVARATKVLKNWKAPGHDSLPAEMLKID--DDEPFVLGHLQTILVKVWNGGDIPREWKDATMKVLYKEGDRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYM------------CFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGEVSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLQNLVCLEEGKTEAGGGEETPLDRVRSAVWGMLYANDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPTXXXXXXXXXXLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGLELFDRPQA 471          
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6H5K8C3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8C3_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 6.520e-30
Identity = 138/444 (31.08%), Postives = 188/444 (42.34%), Query Frame = 1
Query:  304 R*TRLFGNLLNPKPDKLRLDTIETVTHV--------LRVEPA*NKLTAALRSAANAKAVGLDELQVELLQLELYDRAPGVPVNDQRL---VWHQRKVPQR*RDAVMKMMRK-------NERRVRQLCRH--------LTRSTRG*GPSQNTRYETKY-LRPHGSTTNVMFAVRRLQELERKAHVPLFIRFCPPRTSLEGACPLRNNAADYESNSPISQNESLRAGL*RSILGVIR---GGTVALSRMRGFPAGVQRRRTRG-------------------------RFSGDTDILADISHLQ--KQPSNVGPETALECARRAIWGML*ADDACILSRSPRGLERMMAVFVEVFGPFGLAISESKMETMCM--------SIIRAPVAQVVFNATGQQCRQTTSFTYLGGAVIETPNLPAKFDRRIRAGWISFGR*TRKLYDRPKA 1440
            R  R F  LLN K   L    I  VT          L   P   ++  A +   N KA G D L  ELL+++  D  P V  +   +   VW+   +P+  +DA +K++ K       N  R   L  H        +T        + N   E +   RP  ST +++  VRRLQEL R+  +P ++            C +  N A    +  +      RAG+   +L  IR    G  A  RM           T+G                         RFS D  +L  +  L+  K     G ET L+  RRA+WGML ADDA ++SRS  GL RMM + VEVFG FGL +SE K ET+ M        +   AP   +   A GQ+  QTT F YLGG V E  +L  + + R R  W    R  R+L+DRP+A
Sbjct:   92 RWARFFSTLLNTKSPTLNPHIIGRVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLKID--DDEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKKGDRSNCNNYRGISLLSHVGKVQIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLCVVRRLQELGRRKKIPFYM------------CFVDLNKAYDSVDREMLWKVLARAGIPARLLKAIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEGGGGEETPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPAPPPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQA 521          
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 3.170e-29
Identity = 127/410 (30.98%), Postives = 190/410 (46.34%), Query Frame = 1
Query:  379 THVLRVEPA*NKLTAALRSAANAKAVGLDELQVELLQLELYDRAPGVPVNDQRL------VWHQRKVPQR*RDAVMKMMRK-------NERRVRQLCRHL---------TRSTRG*GPSQNTRYETKYLRPHGSTTNVMFAVRRLQELERKAHVPLFIRFCPPRTSLEGACPLRNNAADYESNSPISQNESLRAGL*RSILGVIRGGTVAL-SRMRG--------FPA--GVQRRRTRG-----------------RFSGDTDILADISHLQKQPSNVGPETALECARRAIWGML*ADDACILSRSPRGLERMMAVFVEVFGPFGLAISESKMETMCMSI------IRAPVAQVVFNATGQQCRQTTSFTYLGGAVIETPNLPAKFDRRIRAGWISFGR*TRKLYDRPKA 1440
            T  L   P   ++ AA +   N KAVG D L  ELL+++  D     PV  +RL      VW+  ++PQ  +DA++K++ K       N  R   L  H+          R +     ++    E    RP  ST  ++F VRRLQEL R+  +PL++ F   + + +        + D E    +      RAG+   ++ VIR   V + +R+R         FP   G+++  +                   RFS D  I+ D+ +L+++    G    L+  RRA+WGML ADDA ++S+S  GL RMM + VEVF  FGL +SE K ET+ M +             +   A GQ+  QTT F YLGG V E  +L  + + R +A W    R   +L+DRP A
Sbjct:    9 TRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDE----PVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYD--------SVDRE----LLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEIIVTRFSQDEVIVRDLVYLKEEERRGGG--LLDRVRRAVWGMLYADDAGVVSKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIRRYATELFDRPGA 400          
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6H5JVL0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVL0_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 6.490e-29
Identity = 135/440 (30.68%), Postives = 188/440 (42.73%), Query Frame = 1
Query:  304 R*TRLFGNLLNPKPDKLRLDTIETVTHV--------LRVEPA*NKLTAALRSAANAKAVGLDELQVELLQLELYDRAPGVPVNDQRL-VWHQRKVPQR*RDAVMKMMRKNERRVRQ------LCRH--------LTRSTRG*GPSQNTRYETKY-LRPHGSTTNVMFAVRRLQELERKAHVPLFIRFCPPRTSLEGACPLRNNAADYESNSPISQNESLRAGL*RSILGVIR---GGTVALSRMRGFPAGVQRRRTRG-------------------------RFSGDTDILADISHLQ--KQPSNVGPETALECARRAIWGML*ADDACILSRSPRGLERMMAVFVEVFGPFGLAISESKMETMCM--------SIIRAPVAQVVFNATGQQCRQTTSFTYLGGAVIETPNLPAKFDRRIRAGWISFGR*TRKLYDRPK 1437
            R  R F  LLN K   L  D IE VT          L   P   ++  A +   N KA G D L  ELL+++  D  P V  +   + VW+   + +  +DA +K++ K +R          L  H        +T        + N   E +   RP  ST +++F VRRLQEL R+  +PL++            C +  N A    +  +      RAG+   ++ VIR    G  A  RM           T+G                         RFS D  +L  +  L+  K  +  G ET L+  RRA+WGML ADDA ++SRS  GL RMM + V V G F L +SE K ET+ M        +   AP   +   A GQ+  QTT F YLGG V E  +L  + + R R  W    R  R++ DRP+
Sbjct:   42 RWARFFSTLLNTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKDLKNWKAPGHDSLPAELLKID--DDEPFVLGHLHTIKVWNGGDILREWKDATIKVLYKGDRSNCNNYGGISLLSHVGKVPIMIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYM------------CFVDLNKAYDSVDREMLWKVLARAGISAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGERQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEAGGGEETPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIVVVSGEFELRVSEKKTETLLMPAKDISTTTSQPAPPPPLTIEAAGQKYAQTTEFRYLGGLVNEQGHLTREINYRSRGAWACLRRYGREILDRPQ 467          
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6H5K7X5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X5_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.060e-28
Identity = 121/386 (31.35%), Postives = 178/386 (46.11%), Query Frame = 1
Query:  451 AVGLDELQVELLQLELYDRAPGVPVNDQRL------VWHQRKVPQR*RDAVMKMMRK-------NERRVRQLCRHL---------TRSTRG*GPSQNTRYETKYLRPHGSTTNVMFAVRRLQELERKAHVPLFIRFCPPRTSLEGACPLRNNAADYESNSPISQNESLRAGL*RSILGVIRGGTVAL-SRMRG--------FPAGVQRRR-------------------TRGRFSGDTDILADISHLQKQPSNVGPETALECARRAIWGML*ADDACILSRSPRGLERMMAVFVEVFGPFGLAISESKMETMCMSI------IRAPVAQVVFNATGQQCRQTTSFTYLGGAVIETPNLPAKFDRRIRAGWISFGR*TRKLYDRPKA 1440
            AVG D L  ELL+++  D     P+  +RL      VW+  ++PQ  +DA++K++ K       N  R   L  H+          R +     ++    E    RP  ST  ++F VRRLQEL R+  +PL++ F   + + +        + D E    +      RAG+   ++ VIR   V + +R+R         FP     R+                      RFS D  I+ D+ +L+++    G  T L+  RRA+WGML ADDA I+S+S  GL RMM + VEVF  FGL +SE K ET+ M +             +   A GQ+  QTT F YLGG V E  +L  + + R +A W    R   +L+DRP A
Sbjct:    6 AVGPDLLAAELLKVDGDDE----PIVLERLRAIFVEVWNGGEMPQEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYD--------SVDRE----LLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSISPLLFNVFFAAPLEVIVARFSKDEVIMRDLVYLKEEEG--GGRTLLDRVRRAVWGMLYADDAGIVSKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGA 373          
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6H5KBT2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT2_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 3.340e-28
Identity = 101/285 (35.44%), Postives = 136/285 (47.72%), Query Frame = 1
Query:  700 RPHGSTTNVMFAVRRLQELERKAHVPLFIRFCPPRTSLEGACPLRNNAADYESNSPISQNESLRAGL*RSILGVIR---GGTVALSRMRG--------FPAGVQRRRTRG-----------------RFSGDTDILADISHLQ--KQPSNVGPETALECARRAIWGML*ADDACILSRSPRGLERMMAVFVEVFGPFGLAISESKMETMCM--------SIIRAPVAQVVFNATGQQCRQTTSFTYLGGAVIETPNLPAKFDRRIRAGWISFGR*TRKLYDRPKA 1440
            RP  ST +++F VRRLQEL R+  +PL++ F              N A D      + +  + RAG+   ++ VIR    G  A  RM             GV++                      RFS D  +L  +  L+  K  +  G ET L+  RRA+WGML ADDA ++SRS  GL RMM + VEVFG FGL +SE K ET+ M        +   AP   +   A GQ+  QTT F YLGG V E  +L  + + R R  W    R  R+L+DRP+A
Sbjct:  126 RPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVD-----------LNKAYDSVDRGMLWKVLA-RAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFLVTPGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEAGGGEETPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPAPPPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQA 398          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K319_9PHAE1.640e-3231.14Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K7U5_9PHAE2.640e-3231.14Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLM6_9PHAE3.110e-3231.14Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KS82_9PHAE5.030e-3231.08Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L1H2_9PHAE7.430e-3131.08Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K8C3_9PHAE6.520e-3031.08Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA81_9PHAE3.170e-2930.98Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JVL0_9PHAE6.490e-2930.68Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K7X5_9PHAE1.060e-2831.35Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KBT2_9PHAE3.340e-2835.44Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1040contigA-nodosum_M_contig1040:162377..163951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog8479.XP_005287781.1
PFAMsExo_endo_phos_2,RVT_1
Model size1575
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.97e-07
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BHR3@33208|Metazoa,3CUIP@33213|Bilateria,48DAM@7711|Chordata,49HS5@7742|Vertebrata,4CMNI@8459|Testudines
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size447
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866413.5264366-UTR-A-nodosum_M_contig1040:162376..1627831680866413.5264366-UTR-A-nodosum_M_contig1040:162376..162783Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1040 162377..162783 -
1680866413.548633-UTR-A-nodosum_M_contig1040:163230..1639511680866413.548633-UTR-A-nodosum_M_contig1040:163230..163951Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1040 163231..163951 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866413.538072-CDS-A-nodosum_M_contig1040:162783..1632301680866413.538072-CDS-A-nodosum_M_contig1040:162783..163230Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1040 162784..163230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1040.16.1prot_A-nodosum_M_contig1040.16.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1040 162784..163230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1040.16.1

>prot_A-nodosum_M_contig1040.16.1 ID=prot_A-nodosum_M_contig1040.16.1|Name=mRNA_A-nodosum_M_contig1040.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=149bp
MLCSRCAGCKSWKGKRTYRCSYDSVHRALLWKVLARFGITPQIMKVIRQF
HKMRACVRGYDGQYLESFEVAQWRCQGCVVSPLVFSVVALEADSAGTRTY
SQIFPTFKSSRQMLALKRHWNVRGVLFGGCCKLMTRVSCRGRRAGWRG*
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mRNA from alignment at A-nodosum_M_contig1040:162377..163951-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1040.16.1 ID=mRNA_A-nodosum_M_contig1040.16.1|Name=mRNA_A-nodosum_M_contig1040.16.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1575bp|location=Sequence derived from alignment at A-nodosum_M_contig1040:162377..163951- (Ascophyllum nodosum dioecious)
GCTGTTCGTAAGATTATTTCCCTTGCCGAAGTACGATCGTCGGTGTTTAT TAGCGACCGCCTTCTGAAGGTGACGCTTGAATTGTGCGGTCGAGCCCGGA CTGTGACGTTCGTTTCGGATATGCTCCAACAGAAAGTGCTGACCGAAGAT ACACTCAAGCTATTGGAAAAAGCACGCTTTCTGGACAGTCATAGACAGGT TCGTGAAATAAGTGCCCGAGCACAAACAGCTGTTTGTGTTATTTGACGCC AACGATCGCACGGGACGGAAGGGAGAGCTTAGGAGTGAAAATTGTAAAGT TTACGATGAACGCGGTTGTTTGGCAACCTGCTCAATCCGAAACCTGACAA GCTCAGACTCGACACCATCGAAACTGTCACACACGTTCTCAGGGTCGAAC CGGCATGAAATAAGCTAACCGCAGCCTTGAGGTCGGCGGCAAACGCGAAG GCAGTGGGACTAGATGAACTCCAGGTCGAACTCCTTCAACTCGAGCTTTA CGACCGTGCTCCGGGAGTTCCAGTGAATGATCAAAGGCTTGTTTGGCACC AACGGAAGGTACCGCAGCGGTGACGAGATGCCGTGATGAAAATGATGCGC AAAAACGAAAGGCGGGTGAGGCAACTATGCCGGCATCTCACTCGTAGCAC ACGCGGGTAAGGTCCTTCTCAAAATACTCGCTACGAGACTAAGTACCTAC GCCCGCACGGCTCGACGACGAATGTTATGTTCGCGGTGCGCAGGCTGCAA GAGTTGGAAAGGAAAGCGCACGTACCGTTGTTCATACGATTCTGTCCACC GCGCACTTCTTTGGAAGGTGCTTGCCCGCTTCGGAATAACGCCGCAGATT ATGAAAGTAATTCGCCAATTTCACAAAATGAGAGCTTGCGTGCGGGGTTA TGACGGTCAATACTTGGAGTCATTCGAGGTGGCACAGTGGCGTTGTCAAG GATGCGTGGTTTCCCCGCTGGTGTTCAGCGTCGTCGCACTAGAGGCAGAT TCAGCGGGGACACGGACATACTCGCAGATATTTCCCACCTTCAAAAGCAG CCGTCAAATGTTGGCCCTGAAACGGCACTGGAATGTGCGCGGCGTGCTAT TTGGGGGATGCTGTAAGCTGATGACGCGTGTATCTTGTCGCGGTCGCCGC GCGGGTTGGAGAGGATGATGGCGGTCTTCGTCGAAGTCTTCGGCCCATTT GGTCTGGCCATCTCGGAGAGCAAGATGGAGACCATGTGCATGTCGATTAT ACGTGCGCCGGTAGCGCAGGTAGTCTTCAACGCCACTGGGCAACAGTGCC GCCAGACAACCTCCTTCACCTACTTGGGAGGCGCCGTCATTGAAACGCCA AACCTGCCGGCCAAATTTGACCGGCGGATCCGTGCCGGGTGGATAAGCTT CGGGCGTTAGACGCGGAAGCTGTACGACCGCCCGAAGGCAAGTGAAGTCT GCTATGCTGCACCTGAAGGCCCGGATGGTGAAATACGAGGTTTTTAGAGG CTCTCATTTACGTGTGCGCGACATGGACCCCTCTTAAAGGTGTCACTAAA ACAAGCTTCGTACTGCACGTCACCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1040:162377..163951-

>mRNA_A-nodosum_M_contig1040.16.1 ID=mRNA_A-nodosum_M_contig1040.16.1|Name=mRNA_A-nodosum_M_contig1040.16.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=447bp|location=Sequence derived from alignment at A-nodosum_M_contig1040:162377..163951- (Ascophyllum nodosum dioecious)
ATGTTATGTTCGCGGTGCGCAGGCTGCAAGAGTTGGAAAGGAAAGCGCAC
GTACCGTTGTTCATACGATTCTGTCCACCGCGCACTTCTTTGGAAGGTGC
TTGCCCGCTTCGGAATAACGCCGCAGATTATGAAAGTAATTCGCCAATTT
CACAAAATGAGAGCTTGCGTGCGGGGTTATGACGGTCAATACTTGGAGTC
ATTCGAGGTGGCACAGTGGCGTTGTCAAGGATGCGTGGTTTCCCCGCTGG
TGTTCAGCGTCGTCGCACTAGAGGCAGATTCAGCGGGGACACGGACATAC
TCGCAGATATTTCCCACCTTCAAAAGCAGCCGTCAAATGTTGGCCCTGAA
ACGGCACTGGAATGTGCGCGGCGTGCTATTTGGGGGATGCTGTAAGCTGA
TGACGCGTGTATCTTGTCGCGGTCGCCGCGCGGGTTGGAGAGGATGA
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