prot_A-nodosum_M_contig1040.16.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1040.16.1
Unique Nameprot_A-nodosum_M_contig1040.16.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length149
Homology
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6H5KBR5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR5_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 6.210e-14
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 0
Query:   21 SYDSVHRALLWKVLARFGITPQIMKVIRQFHK-MRACVRGYDGQYLESFEVAQWRCQGCVVSPLVFSVVALE 91
            +YDSV R +LWKVLAR GI+ ++++VIRQFH  MRA VR  DG+  + F V Q   QGCV+SPL+F++   E
Sbjct:   29 AYDSVDREMLWKVLARAGISAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAE 100          
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6H5K934_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K934_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 7.310e-13
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 0
Query:   21 SYDSVHRALLWKVLARFGITPQIMKVIRQFHK-MRACVRGYDGQYLESFEVAQWRCQGCVVSPLVFSVVALE 91
            +YDSV R +LWKVLAR GI  ++++VIRQFH  MRA VR  DG+  + F V Q   QGCV+SPL+F++   E
Sbjct:    9 AYDSVDREMLWKVLARAGIPAKLIEVIRQFHDVMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFTIFFAE 80          
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6H5JVL0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVL0_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.090e-12
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 0
Query:   21 SYDSVHRALLWKVLARFGITPQIMKVIRQFHK-MRACVRGYDGQYLESFEVAQWRCQGCVVSPLVFSVVALE 91
            +YDSV R +LWKVLAR GI+ ++++VIRQFH  MRA VR  DG+  + F V Q   QGCV+SPL+F++   E
Sbjct:  232 AYDSVDREMLWKVLARAGISAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGERQGCVLSPLLFNIFFAE 303          
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A0N4U3M3_DRAME (Reverse transcriptase domain-containing protein n=1 Tax=Dracunculus medinensis TaxID=318479 RepID=A0A0N4U3M3_DRAME)

HSP 1 Score: 56.6 bits (135), Expect = 2.180e-7
Identity = 23/65 (35.38%), Postives = 43/65 (66.15%), Query Frame = 0
Query:   22 YDSVHRALLWKVLARFGITPQIMKVIRQFHKMRACVRGYDGQYLESFEVAQWRCQGCVVSPLVFS 86
            +DS+ RA+LW+V+ R G+  +I+++I+ F++  +      G+  +SFE+    CQGC +SP +F+
Sbjct:   44 FDSIDRAVLWRVMERGGVPEKIIRLIKAFYERTSAQVCIYGELTDSFEIRTDVCQGCTLSPTIFN 108          
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A3P7CZW8_SCHSO (Reverse transcriptase domain-containing protein n=2 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A3P7CZW8_SCHSO)

HSP 1 Score: 57.8 bits (138), Expect = 3.070e-7
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 0
Query:   21 SYDSVHRALLWKVLARFGITPQIMKVIRQFHK-MRACVRGYDGQYLESFEVAQWRCQGCVVSPLVFSVV 88
            ++D+V+R  LWKV+ +FG   Q M ++RQ H  M ACV    G   E+F V     QGCV++P++FS++
Sbjct:   80 AFDTVNREGLWKVIQKFGCPEQFMHMVRQLHDGMTACVTD-SGTVSEAFAVTNGMKQGCVLAPILFSLM 147          
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6H5L431_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L431_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 6.150e-6
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 0
Query:   21 SYDSVHRALLWKVLARFGITPQIMKVIRQFHK-MRACVRGYDG 62
            +YDSV R +LWKVLAR GI+ ++++VIRQFH  MRA VR  DG
Sbjct:   74 AYDSVDREMLWKVLARAGISAKLIEVIRQFHDGMRARVRMDDG 116          
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A183T3T3_SCHSO (Reverse transcriptase domain-containing protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183T3T3_SCHSO)

HSP 1 Score: 53.5 bits (127), Expect = 1.520e-5
Identity = 27/69 (39.13%), Postives = 45/69 (65.22%), Query Frame = 0
Query:   21 SYDSVHRALLWKVLARFGITPQIMKVIRQFHK-MRACVRGYDGQYLESFEVAQWRCQGCVVSPLVFSVV 88
            ++++VHR  LWKV+ +FG + +   ++RQ H  M A V G +G   E+F VA    QGCV++P++ S++
Sbjct:   15 AFNTVHRDGLWKVMQKFGFSERFTHMVRQLHDGMTARVTG-NGMVSEAFAVANGMKQGCVMAPILLSLM 82          
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A183SRN7_SCHSO (Reverse transcriptase domain-containing protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183SRN7_SCHSO)

HSP 1 Score: 51.6 bits (122), Expect = 5.800e-5
Identity = 36/124 (29.03%), Postives = 58/124 (46.77%), Query Frame = 0
Query:   21 SYDSVHRALLWKVLARFGITPQIMKVIRQFHKMRACVRGYDGQYLESFEVAQWRCQGCVVSPLVFSVV-------ALEADSAGTRTYSQIFPTFKSSRQMLALKR--HWNVRGVLFGGCCKLMT 135
            ++D+V+R  LWK + +FG + +    +RQ H         +G   E+F V     QGCV++P++FS++       A   +  G R   +      +SR+M A  R     V  +LF   C L T
Sbjct:   15 AFDTVNRDGLWKAMQKFGCSERFTHTVRQLHDGMLARVTDNGTVSEAFTVTNGGKQGCVLAPILFSLMFSAMLMDAYRDEQPGIRIAYRTDAHLLNSRRMQAPTRVSTTTVHDLLFADDCALNT 138          
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6S7JDV2_PARCT (RNA-directed DNA polymerase from mobile element jockey-like n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JDV2_PARCT)

HSP 1 Score: 51.6 bits (122), Expect = 9.500e-5
Identity = 25/69 (36.23%), Postives = 44/69 (63.77%), Query Frame = 0
Query:   21 SYDSVHRALLWKVLARFGITPQIMKVIRQFHK-MRACVRGYDGQYLESFEVAQWRCQGCVVSPLVFSVV 88
            ++D+V+R  LW ++ +F   P+ + ++RQFH  M+A V   DG     FEV     QGC+++P++FS++
Sbjct:  391 AFDTVNRTGLWLIMEKFDCPPRFITMVRQFHDGMQAHVLD-DGNQSSPFEVTNGVKQGCILAPMLFSMM 458          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KBR5_9PHAE6.210e-1454.17Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K934_9PHAE7.310e-1354.17Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JVL0_9PHAE1.090e-1254.17Reverse transcriptase domain-containing protein n=... [more]
A0A0N4U3M3_DRAME2.180e-735.38Reverse transcriptase domain-containing protein n=... [more]
A0A3P7CZW8_SCHSO3.070e-742.03Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L431_9PHAE6.150e-662.79Reverse transcriptase domain-containing protein n=... [more]
A0A183T3T3_SCHSO1.520e-539.13Reverse transcriptase domain-containing protein n=... [more]
A0A183SRN7_SCHSO5.800e-529.03Reverse transcriptase domain-containing protein n=... [more]
A0A6S7JDV2_PARCT9.500e-536.23RNA-directed DNA polymerase from mobile element jo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1040contigA-nodosum_M_contig1040:162784..163230 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1040.16.1mRNA_A-nodosum_M_contig1040.16.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1040 162377..163951 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1040.16.1 ID=prot_A-nodosum_M_contig1040.16.1|Name=mRNA_A-nodosum_M_contig1040.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=149bp
MLCSRCAGCKSWKGKRTYRCSYDSVHRALLWKVLARFGITPQIMKVIRQF
HKMRACVRGYDGQYLESFEVAQWRCQGCVVSPLVFSVVALEADSAGTRTY
SQIFPTFKSSRQMLALKRHWNVRGVLFGGCCKLMTRVSCRGRRAGWRG*
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