mRNA_A-nodosum_M_contig1040.16.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE) HSP 1 Score: 143 bits (361), Expect = 1.640e-32 Identity = 137/440 (31.14%), Postives = 201/440 (45.68%), Query Frame = 1
Query: 313 RLFGNLLNPKPDKLRLDTIETV--------THVLRVEPA*NKLTAALRSAANAKAVGLDELQVELLQLELYDRAPGVPVNDQRL------VWHQRKVPQR*RDAVMKMMRK-------NERRVRQLCRHL---------TRSTRG*GPSQNTRYETKYLRPHGSTTNVMFAVRRLQELERKAHVPLFIRFCPPRTSLEGACPLRNNAADYESNSPISQNESLRAGL*RSILGVIRGGTVAL-SRMRG--------FPA--GVQRRRTRG-----------------RFSGDTDILADISHLQKQPSNVGPETALECARRAIWGML*ADDACILSRSPRGLERMMAVFVEVFGPFGLAISESKMETMCMSI------IRAPVAQVVFNATGQQCRQTTSFTYLGGAVIETPNLPAKFDRRIRAGWISFGR*TRKLYDRPKA 1440
R F LLN K L D +E V T L P ++ AA + N KAVG D L ELL+++ D PV +RL VW+ ++PQ +DA++K++ K N R L H+ R + ++ E RP ST ++F VRRLQEL R+ +PL++ F + + + + D E + RAG+ ++ VIR V + +R+R FP G+++ + RFS D I+ D+ +L+++ E L+ RRA+WGML ADDA ++S+S GL RMM + VEVF FGL +SE K ET+ M + + A GQ+ QTT F YLGG V E +L + + R +A W R +L+DRP A
Sbjct: 763 RFFNTLLNSKSPTLNPDVVEQVMQRPATRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDE----PVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLHKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYD--------SVDRE----LLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEIIVTRFSQDEVIVRDLVYLKEEERR--GEGLLDRVRRAVWGMLYADDAGVVSKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGA 1184
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE) HSP 1 Score: 142 bits (359), Expect = 2.640e-32 Identity = 137/440 (31.14%), Postives = 201/440 (45.68%), Query Frame = 1
Query: 313 RLFGNLLNPKPDKLRLDTIETV--------THVLRVEPA*NKLTAALRSAANAKAVGLDELQVELLQLELYDRAPGVPVNDQRL------VWHQRKVPQR*RDAVMKMMRK-------NERRVRQLCRHL---------TRSTRG*GPSQNTRYETKYLRPHGSTTNVMFAVRRLQELERKAHVPLFIRFCPPRTSLEGACPLRNNAADYESNSPISQNESLRAGL*RSILGVIRGGTVAL-SRMRG--------FPA--GVQRRRTRG-----------------RFSGDTDILADISHLQKQPSNVGPETALECARRAIWGML*ADDACILSRSPRGLERMMAVFVEVFGPFGLAISESKMETMCMSI------IRAPVAQVVFNATGQQCRQTTSFTYLGGAVIETPNLPAKFDRRIRAGWISFGR*TRKLYDRPKA 1440
R F LLN K L D +E V T L P ++ AA + N KAVG D L ELL+++ D PV +RL VW+ ++PQ +DA++K++ K N R L H+ R + ++ E RP ST ++F VRRLQEL R+ +PL++ F + + + + D E + RAG+ ++ VIR V + +R+R FP G+++ + RFS D I+ D+ +L+++ E L+ RRA+WGML ADDA ++S+S GL RMM + VEVF FGL +SE K ET+ M + + A GQ+ QTT F YLGG V E +L + + R +A W R +L+DRP A
Sbjct: 476 RFFNTLLNSKSPTLNPDVVEQVMQRPATRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDE----PVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYD--------SVDRE----LLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEIIVTRFSQDEVIVRDLVYLKEEERR--GEGLLDRVRRAVWGMLYADDAGVVSKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGA 897
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE) HSP 1 Score: 142 bits (359), Expect = 3.110e-32 Identity = 137/440 (31.14%), Postives = 201/440 (45.68%), Query Frame = 1
Query: 313 RLFGNLLNPKPDKLRLDTIETV--------THVLRVEPA*NKLTAALRSAANAKAVGLDELQVELLQLELYDRAPGVPVNDQRL------VWHQRKVPQR*RDAVMKMMRK-------NERRVRQLCRHL---------TRSTRG*GPSQNTRYETKYLRPHGSTTNVMFAVRRLQELERKAHVPLFIRFCPPRTSLEGACPLRNNAADYESNSPISQNESLRAGL*RSILGVIRGGTVAL-SRMRG--------FPA--GVQRRRTRG-----------------RFSGDTDILADISHLQKQPSNVGPETALECARRAIWGML*ADDACILSRSPRGLERMMAVFVEVFGPFGLAISESKMETMCMSI------IRAPVAQVVFNATGQQCRQTTSFTYLGGAVIETPNLPAKFDRRIRAGWISFGR*TRKLYDRPKA 1440
R F LLN K L D +E V T L P ++ AA + N KAVG D L ELL+++ D PV +RL VW+ ++PQ +DA++K++ K N R L H+ R + ++ E RP ST ++F VRRLQEL R+ +PL++ F + + + + D E + RAG+ ++ VIR V + +R+R FP G+++ + RFS D I+ D+ +L+++ G L+ RRA+WGML ADDA ++S+S GL RMM + VEVF FGL +SE K ET+ M + + A GQ+ QTT F YLGG V E +L + + R +A W R +L+DRP A
Sbjct: 967 RFFNTLLNSKSPTLNPDVVEQVMQRPATRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDE----PVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYD--------SVDRE----LLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEIIVTRFSQDEVIVRDLVYLKEEERRGGG--LLDRVRRAVWGMLYADDAGVVSKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGA 1388
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE) HSP 1 Score: 141 bits (355), Expect = 5.030e-32 Identity = 138/444 (31.08%), Postives = 193/444 (43.47%), Query Frame = 1
Query: 304 R*TRLFGNLLNPKPDKLRLDTIETVTHV--------LRVEPA*NKLTAALRSAANAKAVGLDELQVELLQLELYDRAPGVPVNDQRL---VWHQRKVPQR*RDAVMKMMRK-------NERRVRQLCRH--------LTRSTRG*GPSQNTRYETKY-LRPHGSTTNVMFAVRRLQELERKAHVPLFIRFCPPRTSLEGACPLRNNAADYESNSPISQNESLRAGL*RSILGVIRGGTVALSRMRGFPAG-------VQRRRTRG---------------------RFSGDTDILADISHLQ--KQPSNVGPETALECARRAIWGML*ADDACILSRSPRGLERMMAVFVEVFGPFGLAISESKMETMCMSII--------RAPVAQVVFNATGQQCRQTTSFTYLGGAVIETPNLPAKFDRRIRAGWISFGR*TRKLYDRPKA 1440
R + F LL+ K L D IE VT L P ++ A + N KA G D L ELL+++ D P V + + VW+ +P+ +DA +K++ K N R L H +T + N E + RP ST +++F VRRLQEL R+ +PL++ F N A D + + + RAG+ ++ VIR + G G V + +G RFS D +L + L+ K + G ET L+ RRA+WGM ADDA ++SRS GL RMM + VEVFG FGL +SE K ET+ M AP + A GQ+ QTT F YLGG V E +L + + R R W R R+L+DRP+A
Sbjct: 42 RWAKFFSTLLDTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLKID--DDEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKQGDRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGCRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVD-----------LNKAYDSVDREMVWKVLA-RAGIPAKLIEVIRQFHDGMRARAGMDDGELSDWFFVTQGAGQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEAGGGEETPLDRVRRAVWGMSYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPTTISQTAPPPPLTIKAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQA 471
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6H5L1H2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1H2_9PHAE) HSP 1 Score: 137 bits (344), Expect = 7.430e-31 Identity = 138/444 (31.08%), Postives = 191/444 (43.02%), Query Frame = 1
Query: 304 R*TRLFGNLLNPKPDKLRLDTIETVTHV--------LRVEPA*NKLTAALRSAANAKAVGLDELQVELLQLELYDRAPGVPVNDQRL---VWHQRKVPQR*RDAVMKMMRK-------NERRVRQLCRH--------LTRSTRG*GPSQNTRYETKY-LRPHGSTTNVMFAVRRLQELERKAHVPLFIRFCPPRTSLEGACPLRNNAADYESNSPISQNESLRAGL*RSILGVIR---GGTVALSRMRGFPAGVQRRRTRG-------------------------RFSGDTDILADISHLQ--KQPSNVGPETALECARRAIWGML*ADDACILSRSPRGLERMMAVFVEVFGPFGLAISESKMETMCMSIIRAPVAQ--------VVFNATGQQCRQTTSFTYLGGAVIETPNLPAKFDRRIRAGWISFGR*TRKLYDRPKA 1440
R R F LLN K L D IE T L P ++ A + N KA G D L E+L+++ D P V + Q + VW+ +P+ +DA MK++ K N R L H +T + N E + RP ST +++F VRRLQEL R+ +PL++ C + N A + + RAG+ ++ VIR G A RM T+G RFS D +L ++ L+ K + G ET L+ R A+WGML A+DA ++SRS GL RMM + VEVFG FGL +SE K ET+ M P + A GQ+ QTT F YLGG V E +L + + R R W R +L+DRP+A
Sbjct: 42 RWARFFSTLLNTKLPTLNPDIIERGTQRPATRDTQRLGDVPELEEVARATKVLKNWKAPGHDSLPAEMLKID--DDEPFVLGHLQTILVKVWNGGDIPREWKDATMKVLYKEGDRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYM------------CFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGEVSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLQNLVCLEEGKTEAGGGEETPLDRVRSAVWGMLYANDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPTXXXXXXXXXXLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGLELFDRPQA 471
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6H5K8C3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8C3_9PHAE) HSP 1 Score: 134 bits (338), Expect = 6.520e-30 Identity = 138/444 (31.08%), Postives = 188/444 (42.34%), Query Frame = 1
Query: 304 R*TRLFGNLLNPKPDKLRLDTIETVTHV--------LRVEPA*NKLTAALRSAANAKAVGLDELQVELLQLELYDRAPGVPVNDQRL---VWHQRKVPQR*RDAVMKMMRK-------NERRVRQLCRH--------LTRSTRG*GPSQNTRYETKY-LRPHGSTTNVMFAVRRLQELERKAHVPLFIRFCPPRTSLEGACPLRNNAADYESNSPISQNESLRAGL*RSILGVIR---GGTVALSRMRGFPAGVQRRRTRG-------------------------RFSGDTDILADISHLQ--KQPSNVGPETALECARRAIWGML*ADDACILSRSPRGLERMMAVFVEVFGPFGLAISESKMETMCM--------SIIRAPVAQVVFNATGQQCRQTTSFTYLGGAVIETPNLPAKFDRRIRAGWISFGR*TRKLYDRPKA 1440
R R F LLN K L I VT L P ++ A + N KA G D L ELL+++ D P V + + VW+ +P+ +DA +K++ K N R L H +T + N E + RP ST +++ VRRLQEL R+ +P ++ C + N A + + RAG+ +L IR G A RM T+G RFS D +L + L+ K G ET L+ RRA+WGML ADDA ++SRS GL RMM + VEVFG FGL +SE K ET+ M + AP + A GQ+ QTT F YLGG V E +L + + R R W R R+L+DRP+A
Sbjct: 92 RWARFFSTLLNTKSPTLNPHIIGRVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLKID--DDEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKKGDRSNCNNYRGISLLSHVGKVQIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLCVVRRLQELGRRKKIPFYM------------CFVDLNKAYDSVDREMLWKVLARAGIPARLLKAIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEGGGGEETPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPAPPPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQA 521
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE) HSP 1 Score: 132 bits (332), Expect = 3.170e-29 Identity = 127/410 (30.98%), Postives = 190/410 (46.34%), Query Frame = 1
Query: 379 THVLRVEPA*NKLTAALRSAANAKAVGLDELQVELLQLELYDRAPGVPVNDQRL------VWHQRKVPQR*RDAVMKMMRK-------NERRVRQLCRHL---------TRSTRG*GPSQNTRYETKYLRPHGSTTNVMFAVRRLQELERKAHVPLFIRFCPPRTSLEGACPLRNNAADYESNSPISQNESLRAGL*RSILGVIRGGTVAL-SRMRG--------FPA--GVQRRRTRG-----------------RFSGDTDILADISHLQKQPSNVGPETALECARRAIWGML*ADDACILSRSPRGLERMMAVFVEVFGPFGLAISESKMETMCMSI------IRAPVAQVVFNATGQQCRQTTSFTYLGGAVIETPNLPAKFDRRIRAGWISFGR*TRKLYDRPKA 1440
T L P ++ AA + N KAVG D L ELL+++ D PV +RL VW+ ++PQ +DA++K++ K N R L H+ R + ++ E RP ST ++F VRRLQEL R+ +PL++ F + + + + D E + RAG+ ++ VIR V + +R+R FP G+++ + RFS D I+ D+ +L+++ G L+ RRA+WGML ADDA ++S+S GL RMM + VEVF FGL +SE K ET+ M + + A GQ+ QTT F YLGG V E +L + + R +A W R +L+DRP A
Sbjct: 9 TRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDE----PVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYD--------SVDRE----LLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEIIVTRFSQDEVIVRDLVYLKEEERRGGG--LLDRVRRAVWGMLYADDAGVVSKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIRRYATELFDRPGA 400
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6H5JVL0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVL0_9PHAE) HSP 1 Score: 129 bits (325), Expect = 6.490e-29 Identity = 135/440 (30.68%), Postives = 188/440 (42.73%), Query Frame = 1
Query: 304 R*TRLFGNLLNPKPDKLRLDTIETVTHV--------LRVEPA*NKLTAALRSAANAKAVGLDELQVELLQLELYDRAPGVPVNDQRL-VWHQRKVPQR*RDAVMKMMRKNERRVRQ------LCRH--------LTRSTRG*GPSQNTRYETKY-LRPHGSTTNVMFAVRRLQELERKAHVPLFIRFCPPRTSLEGACPLRNNAADYESNSPISQNESLRAGL*RSILGVIR---GGTVALSRMRGFPAGVQRRRTRG-------------------------RFSGDTDILADISHLQ--KQPSNVGPETALECARRAIWGML*ADDACILSRSPRGLERMMAVFVEVFGPFGLAISESKMETMCM--------SIIRAPVAQVVFNATGQQCRQTTSFTYLGGAVIETPNLPAKFDRRIRAGWISFGR*TRKLYDRPK 1437
R R F LLN K L D IE VT L P ++ A + N KA G D L ELL+++ D P V + + VW+ + + +DA +K++ K +R L H +T + N E + RP ST +++F VRRLQEL R+ +PL++ C + N A + + RAG+ ++ VIR G A RM T+G RFS D +L + L+ K + G ET L+ RRA+WGML ADDA ++SRS GL RMM + V V G F L +SE K ET+ M + AP + A GQ+ QTT F YLGG V E +L + + R R W R R++ DRP+
Sbjct: 42 RWARFFSTLLNTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKDLKNWKAPGHDSLPAELLKID--DDEPFVLGHLHTIKVWNGGDILREWKDATIKVLYKGDRSNCNNYGGISLLSHVGKVPIMIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYM------------CFVDLNKAYDSVDREMLWKVLARAGISAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGERQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEAGGGEETPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIVVVSGEFELRVSEKKTETLLMPAKDISTTTSQPAPPPPLTIEAAGQKYAQTTEFRYLGGLVNEQGHLTREINYRSRGAWACLRRYGREILDRPQ 467
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6H5K7X5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X5_9PHAE) HSP 1 Score: 128 bits (322), Expect = 1.060e-28 Identity = 121/386 (31.35%), Postives = 178/386 (46.11%), Query Frame = 1
Query: 451 AVGLDELQVELLQLELYDRAPGVPVNDQRL------VWHQRKVPQR*RDAVMKMMRK-------NERRVRQLCRHL---------TRSTRG*GPSQNTRYETKYLRPHGSTTNVMFAVRRLQELERKAHVPLFIRFCPPRTSLEGACPLRNNAADYESNSPISQNESLRAGL*RSILGVIRGGTVAL-SRMRG--------FPAGVQRRR-------------------TRGRFSGDTDILADISHLQKQPSNVGPETALECARRAIWGML*ADDACILSRSPRGLERMMAVFVEVFGPFGLAISESKMETMCMSI------IRAPVAQVVFNATGQQCRQTTSFTYLGGAVIETPNLPAKFDRRIRAGWISFGR*TRKLYDRPKA 1440
AVG D L ELL+++ D P+ +RL VW+ ++PQ +DA++K++ K N R L H+ R + ++ E RP ST ++F VRRLQEL R+ +PL++ F + + + + D E + RAG+ ++ VIR V + +R+R FP R+ RFS D I+ D+ +L+++ G T L+ RRA+WGML ADDA I+S+S GL RMM + VEVF FGL +SE K ET+ M + + A GQ+ QTT F YLGG V E +L + + R +A W R +L+DRP A
Sbjct: 6 AVGPDLLAAELLKVDGDDE----PIVLERLRAIFVEVWNGGEMPQEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYD--------SVDRE----LLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSISPLLFNVFFAAPLEVIVARFSKDEVIMRDLVYLKEEEG--GGRTLLDRVRRAVWGMLYADDAGIVSKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGA 373
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Match: A0A6H5KBT2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT2_9PHAE) HSP 1 Score: 128 bits (321), Expect = 3.340e-28 Identity = 101/285 (35.44%), Postives = 136/285 (47.72%), Query Frame = 1
Query: 700 RPHGSTTNVMFAVRRLQELERKAHVPLFIRFCPPRTSLEGACPLRNNAADYESNSPISQNESLRAGL*RSILGVIR---GGTVALSRMRG--------FPAGVQRRRTRG-----------------RFSGDTDILADISHLQ--KQPSNVGPETALECARRAIWGML*ADDACILSRSPRGLERMMAVFVEVFGPFGLAISESKMETMCM--------SIIRAPVAQVVFNATGQQCRQTTSFTYLGGAVIETPNLPAKFDRRIRAGWISFGR*TRKLYDRPKA 1440
RP ST +++F VRRLQEL R+ +PL++ F N A D + + + RAG+ ++ VIR G A RM GV++ RFS D +L + L+ K + G ET L+ RRA+WGML ADDA ++SRS GL RMM + VEVFG FGL +SE K ET+ M + AP + A GQ+ QTT F YLGG V E +L + + R R W R R+L+DRP+A
Sbjct: 126 RPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVD-----------LNKAYDSVDRGMLWKVLA-RAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFLVTPGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEAGGGEETPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPAPPPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQA 398 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1040.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1040.16.1 >prot_A-nodosum_M_contig1040.16.1 ID=prot_A-nodosum_M_contig1040.16.1|Name=mRNA_A-nodosum_M_contig1040.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=149bp MLCSRCAGCKSWKGKRTYRCSYDSVHRALLWKVLARFGITPQIMKVIRQFback to top mRNA from alignment at A-nodosum_M_contig1040:162377..163951- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1040.16.1 ID=mRNA_A-nodosum_M_contig1040.16.1|Name=mRNA_A-nodosum_M_contig1040.16.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1575bp|location=Sequence derived from alignment at A-nodosum_M_contig1040:162377..163951- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1040:162377..163951- >mRNA_A-nodosum_M_contig1040.16.1 ID=mRNA_A-nodosum_M_contig1040.16.1|Name=mRNA_A-nodosum_M_contig1040.16.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=447bp|location=Sequence derived from alignment at A-nodosum_M_contig1040:162377..163951- (Ascophyllum nodosum dioecious)back to top |