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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 1 |
| Seed ortholog | 2880.D8LNY1 |
| PFAMs | Beta_helix,Chlam_PMP |
| Model size | 627 |
| Max annot lvl | 2759|Eukaryota |
| Hectar predicted targeting category | signal peptide |
| Exons | 1 |
| Evalue | 0.000373 |
| EggNOG OGs | 2BFIX@1|root,2S176@2759|Eukaryota |
| Cds size | 495 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680866373.8929322-CDS-A-nodosum_M_contig1014:270830..271325 | 1680866373.8929322-CDS-A-nodosum_M_contig1014:270830..271325 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig1014 270831..271325 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680866373.9071257-UTR-A-nodosum_M_contig1014:271325..271455 | 1680866373.9071257-UTR-A-nodosum_M_contig1014:271325..271455 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig1014 271326..271455 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1014.8.1 >prot_A-nodosum_M_contig1014.8.1 ID=prot_A-nodosum_M_contig1014.8.1|Name=mRNA_A-nodosum_M_contig1014.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=165bp
MNMTFLLQVLRFQGVDIALQLLLLLLLLPLPLLRSSPCPSTVKEMVVTNT
TDANTLAEALLCEGSASFTVSWHGNVTLSRTLSVSNGSTLNVAASSDSTD
DADTGAVVTSDGTLLLFEADLGSTVSLTGLTLYGGDGALRVTGGSFVEVI
DCTFTKNNRTSSDLG back to topmRNA from alignment at A-nodosum_M_contig1014:270831..271455- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_A-nodosum_M_contig1014.8.1 ID=mRNA_A-nodosum_M_contig1014.8.1|Name=mRNA_A-nodosum_M_contig1014.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=625bp|location=Sequence derived from alignment at A-nodosum_M_contig1014:270831..271455- (Ascophyllum nodosum dioecious)
GATGATTTCGACAGTAAACATTTTTTACTCGTACCCCTCTATACAGTCAG
CTCCTGCCACGGACACGTAAACTGCGCCGTAACGCCGAACTGACATTCTC
CACCAGTCAAACCGAGCCGCGTGTGACAAGATGAACATGACGTTTCTTCT
TCAAGTACTGCGTTTTCAGGGAGTAGACATTGCTCTTCAGCTACTACTAC
TACTGCTGCTGCTACCACTTCCACTCTTACGTTCGTCACCATGCCCCTCC
ACCGTGAAAGAAATGGTCGTCACAAACACAACGGACGCGAACACACTGGC
CGAAGCCCTGCTGTGCGAGGGCTCAGCAAGTTTCACGGTCAGCTGGCACG
GGAACGTCACATTATCTCGTACTCTGTCCGTCTCCAATGGAAGCACCCTG
AACGTGGCGGCTTCTTCGGATAGCACAGACGACGCCGACACAGGCGCGGT
CGTAACTAGTGACGGCACTTTACTTCTTTTTGAGGCCGATCTTGGCTCCA
CCGTTTCCCTGACAGGCCTGACACTTTATGGCGGAGATGGTGCTCTGAGA
GTTACCGGGGGCTCGTTCGTGGAAGTGATCGACTGCACCTTCACGAAAAA
CAACAGAACTTCGTCTGACCTAGGA back to topCoding sequence (CDS) from alignment at A-nodosum_M_contig1014:270831..271455- >mRNA_A-nodosum_M_contig1014.8.1 ID=mRNA_A-nodosum_M_contig1014.8.1|Name=mRNA_A-nodosum_M_contig1014.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=495bp|location=Sequence derived from alignment at A-nodosum_M_contig1014:270831..271455- (Ascophyllum nodosum dioecious)
ATGAACATGACGTTTCTTCTTCAAGTACTGCGTTTTCAGGGAGTAGACAT
TGCTCTTCAGCTACTACTACTACTGCTGCTGCTACCACTTCCACTCTTAC
GTTCGTCACCATGCCCCTCCACCGTGAAAGAAATGGTCGTCACAAACACA
ACGGACGCGAACACACTGGCCGAAGCCCTGCTGTGCGAGGGCTCAGCAAG
TTTCACGGTCAGCTGGCACGGGAACGTCACATTATCTCGTACTCTGTCCG
TCTCCAATGGAAGCACCCTGAACGTGGCGGCTTCTTCGGATAGCACAGAC
GACGCCGACACAGGCGCGGTCGTAACTAGTGACGGCACTTTACTTCTTTT
TGAGGCCGATCTTGGCTCCACCGTTTCCCTGACAGGCCTGACACTTTATG
GCGGAGATGGTGCTCTGAGAGTTACCGGGGGCTCGTTCGTGGAAGTGATC
GACTGCACCTTCACGAAAAACAACAGAACTTCGTCTGACCTAGGA back to top
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