mRNA_A-nodosum_M_contig1014.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1014.8.1
Unique NamemRNA_A-nodosum_M_contig1014.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1014.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1014contigA-nodosum_M_contig1014:270831..271455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LNY1
PFAMsBeta_helix,Chlam_PMP
Model size627
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue0.000373
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866373.8929322-CDS-A-nodosum_M_contig1014:270830..2713251680866373.8929322-CDS-A-nodosum_M_contig1014:270830..271325Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1014 270831..271325 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866373.9071257-UTR-A-nodosum_M_contig1014:271325..2714551680866373.9071257-UTR-A-nodosum_M_contig1014:271325..271455Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1014 271326..271455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1014.8.1prot_A-nodosum_M_contig1014.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1014 270831..271325 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1014.8.1

>prot_A-nodosum_M_contig1014.8.1 ID=prot_A-nodosum_M_contig1014.8.1|Name=mRNA_A-nodosum_M_contig1014.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=165bp
MNMTFLLQVLRFQGVDIALQLLLLLLLLPLPLLRSSPCPSTVKEMVVTNT
TDANTLAEALLCEGSASFTVSWHGNVTLSRTLSVSNGSTLNVAASSDSTD
DADTGAVVTSDGTLLLFEADLGSTVSLTGLTLYGGDGALRVTGGSFVEVI
DCTFTKNNRTSSDLG
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mRNA from alignment at A-nodosum_M_contig1014:270831..271455-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1014.8.1 ID=mRNA_A-nodosum_M_contig1014.8.1|Name=mRNA_A-nodosum_M_contig1014.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=625bp|location=Sequence derived from alignment at A-nodosum_M_contig1014:270831..271455- (Ascophyllum nodosum dioecious)
GATGATTTCGACAGTAAACATTTTTTACTCGTACCCCTCTATACAGTCAG
CTCCTGCCACGGACACGTAAACTGCGCCGTAACGCCGAACTGACATTCTC
CACCAGTCAAACCGAGCCGCGTGTGACAAGATGAACATGACGTTTCTTCT
TCAAGTACTGCGTTTTCAGGGAGTAGACATTGCTCTTCAGCTACTACTAC
TACTGCTGCTGCTACCACTTCCACTCTTACGTTCGTCACCATGCCCCTCC
ACCGTGAAAGAAATGGTCGTCACAAACACAACGGACGCGAACACACTGGC
CGAAGCCCTGCTGTGCGAGGGCTCAGCAAGTTTCACGGTCAGCTGGCACG
GGAACGTCACATTATCTCGTACTCTGTCCGTCTCCAATGGAAGCACCCTG
AACGTGGCGGCTTCTTCGGATAGCACAGACGACGCCGACACAGGCGCGGT
CGTAACTAGTGACGGCACTTTACTTCTTTTTGAGGCCGATCTTGGCTCCA
CCGTTTCCCTGACAGGCCTGACACTTTATGGCGGAGATGGTGCTCTGAGA
GTTACCGGGGGCTCGTTCGTGGAAGTGATCGACTGCACCTTCACGAAAAA
CAACAGAACTTCGTCTGACCTAGGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1014:270831..271455-

>mRNA_A-nodosum_M_contig1014.8.1 ID=mRNA_A-nodosum_M_contig1014.8.1|Name=mRNA_A-nodosum_M_contig1014.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=495bp|location=Sequence derived from alignment at A-nodosum_M_contig1014:270831..271455- (Ascophyllum nodosum dioecious)
ATGAACATGACGTTTCTTCTTCAAGTACTGCGTTTTCAGGGAGTAGACAT
TGCTCTTCAGCTACTACTACTACTGCTGCTGCTACCACTTCCACTCTTAC
GTTCGTCACCATGCCCCTCCACCGTGAAAGAAATGGTCGTCACAAACACA
ACGGACGCGAACACACTGGCCGAAGCCCTGCTGTGCGAGGGCTCAGCAAG
TTTCACGGTCAGCTGGCACGGGAACGTCACATTATCTCGTACTCTGTCCG
TCTCCAATGGAAGCACCCTGAACGTGGCGGCTTCTTCGGATAGCACAGAC
GACGCCGACACAGGCGCGGTCGTAACTAGTGACGGCACTTTACTTCTTTT
TGAGGCCGATCTTGGCTCCACCGTTTCCCTGACAGGCCTGACACTTTATG
GCGGAGATGGTGCTCTGAGAGTTACCGGGGGCTCGTTCGTGGAAGTGATC
GACTGCACCTTCACGAAAAACAACAGAACTTCGTCTGACCTAGGA
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