mRNA_13312 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|178214
Unique NamemRNA_13312
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|178214 vs. uniprot
Match: A0A836CLW9_9STRA (Elongation of fatty acids protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLW9_9STRA)

HSP 1 Score: 559 bits (1441), Expect = 1.220e-201
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 1 
Query:    1 MVFLREWSPWGPIGICAVYLLFCYLGTLYMKNRKAYGLNRALMLWNFALAMFSLMGALRTVPHLANVIALKGYKYTITEQGRDWVGGGAVGFWAQMFVFSKIPELGDTVFIVLRKRPLIFLHWYHHVTVLLYCWHSYYNEAAYGLYFAAMNYSVHAVMYLYYALAALRIRLCKPYYVTTLQISQMFVGIAVCCSCWIYYKKGYGEHIKEGNLWAGAIMYASYAFLFLQYAISRFIKKVMSKEDGAVTMNGNGRKAAATNGTTNGTKAGSKQD 816
            MVFLREWSPWGPIGICAVYLLFCYLGTLYMKNRKAYGLNRALMLWNFALAMFSLMGALRTVPHLANVIALKGYKYTITEQGRDWVGGGAVGFWAQMFVFSKIPELGDTVFIVLRKRPLIFLHWYHHVTVLLYCWHSYYNEAAYGLYFAAMNYSVHAVMYLYYALAALRIRLCKPYYVTTLQISQMFVGIAVCCSCWIYYKKGYGEHIKEGNLWAGAIMYASYAFLFLQYAISRFIKKVMSKEDGAVTMNGNGRKAAATNGTTNGTKAGSKQD
Sbjct:    1 MVFLREWSPWGPIGICAVYLLFCYLGTLYMKNRKAYGLNRALMLWNFALAMFSLMGALRTVPHLANVIALKGYKYTITEQGRDWVGGGAVGFWAQMFVFSKIPELGDTVFIVLRKRPLIFLHWYHHVTVLLYCWHSYYNEAAYGLYFAAMNYSVHAVMYLYYALAALRIRLCKPYYVTTLQISQMFVGIAVCCSCWIYYKKGYGEHIKEGNLWAGAIMYASYAFLFLQYAISRFIKKVMSKEDGAVTMNGNGRKAAATNGTTNGTKAGSKQD 272
[Close]
BLAST of jgi.p|Trimin1|178214 vs. uniprot
Match: A0A835ZI52_9STRA (Elongation of fatty acids protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI52_9STRA)

HSP 1 Score: 347 bits (891), Expect = 4.720e-117
Identity = 170/263 (64.64%), Postives = 205/263 (77.95%), Query Frame = 1 
Query:    1 MVFLREWSPWGPIGICAVYLLFCYLGTLYMKNRKAYGLNRALMLWNFALAMFSLMGALRTVPHLANVIALKGYKYTITEQGRDWVGGGAVGFWAQMFVFSKIPELGDTVFIVLRKRPLIFLHWYHHVTVLLYCWHSYYNEAAYGLYFAAMNYSVHAVMYLYYALAALRIRLCKPYYVTTLQISQMFVGIAVCCSCWIYYK-KGYGEHIKEGNLWAGAIMYASYAFLFLQYAISRFIKKVMSKEDG----AVTMNGNGRKAAAT 774
            M  LR+ SP  P+ +C +YL+  YLG   M+NRKA+ L   L++WN ALA+FSL GALRTVPH+  V+  +GY YTI   GRDW GGGAVG WA  FV+SK PELGDTVFI+LRK+PLIFLHWYHHVTVLLYCWHSYY + AYGLYFAAMNYSVHAVMYLYYALAA++IRLCKPYY+T +QISQMF+GI VC S W YY+ KG+ +++ +GNLWAGAIMY+SYA LFLQY + RF++K+   + G    AV  NG G   AA+
Sbjct:    1 MAQLRKVSPTYPVTVCIIYLIGVYLGRRAMRNRKAFDLRGPLVVWNLALAVFSLWGALRTVPHVFYVLYKEGYTYTIIADGRDWCGGGAVGVWALWFVYSKTPELGDTVFIILRKKPLIFLHWYHHVTVLLYCWHSYYYQEAYGLYFAAMNYSVHAVMYLYYALAAVKIRLCKPYYITAMQISQMFMGIFVCGSAWYYYEIKGHNKYMHKGNLWAGAIMYSSYAALFLQYFVGRFVRKLFKSDKGKGLAAVKANGKGDALAAS 263
[Close]
BLAST of jgi.p|Trimin1|178214 vs. uniprot
Match: A0A6H5KTN4_9PHAE (Elongation of fatty acids protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTN4_9PHAE)

HSP 1 Score: 306 bits (783), Expect = 1.490e-100
Identity = 147/244 (60.25%), Postives = 176/244 (72.13%), Query Frame = 1 
Query:   13 REWSPWGPIGICAVYLLFCYLGTLYMKNRKAYGLNRALMLWNFALAMFSLMGALRTVPHLANVIALKGYKYTITEQGRDWVGGGAVGFWAQMFVFSKIPELGDTVFIVLRKRPLIFLHWYHHVTVLLYCWHSYYNEAAYGLYFAAMNYSVHAVMYLYYALAALRIRLCKPYYVTTLQISQMFVGIAVCCSCWIYYKKGYGEHIKEGNLWAGAIMYASYAFLFLQYAISRFIKKV----MSKEDG 732
            R+ SPW PI +C  YL FCY+G   M NRK + L R L+ WNF L+ FS +G +RTVPHL  ++ + G+KYTI  +   W G GAVG W Q FVFSKIPELGDT+F+VLRK+PLIFLHWYHHVTVLLYCWHSY+ +  YGLYF +MNY+VHA+MYLYY LA +RIRLCKPYY+TT+QISQM VGIAVC +   Y   G  + I   N  AG +MY SY  LFLQYA+ RF+ K     MSK  G
Sbjct:   58 RDNSPWLPILVCMGYLAFCYVGPKVMANRKPFDLRRPLIAWNFMLSAFSFVGMMRTVPHLIQILYVYGFKYTICAKPTMWYGSGAVGMWTQAFVFSKIPELGDTIFVVLRKKPLIFLHWYHHVTVLLYCWHSYFEQTTYGLYFISMNYTVHALMYLYYGLAGMRIRLCKPYYITTMQISQMVVGIAVCVAGGYYMAMGETKFISMPNFQAGVLMYFSYMLLFLQYALGRFLPKAGKSKMSKGGG 301
[Close]
BLAST of jgi.p|Trimin1|178214 vs. uniprot
Match: D8LFZ1_ECTSI (Elongation of fatty acids protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFZ1_ECTSI)

HSP 1 Score: 291 bits (744), Expect = 1.170e-95
Identity = 136/219 (62.10%), Postives = 163/219 (74.43%), Query Frame = 1 
Query:   55 YLLFCYLGTLYMKNRKAYGLNRALMLWNFALAMFSLMGALRTVPHLANVIALKGYKYTITEQGRDWVGGGAVGFWAQMFVFSKIPELGDTVFIVLRKRPLIFLHWYHHVTVLLYCWHSYYNEAAYGLYFAAMNYSVHAVMYLYYALAALRIRLCKPYYVTTLQISQMFVGIAVCCSCWIYYKKGYGEHIKEGNLWAGAIMYASYAFLFLQYAISRFIKK 711
            YL FCY+G   M NRK + L R L+ WNF L+ FS +G +RTVPHL  ++ + G+KYTI  +   W G GAVG W Q FVFSKIPELGDT+F+VLRK+PLIFLHWYHHVTVLLYCWHSY+ +  YGLYF +MNY+VHA+MYLYY LA +RIRLCKPYY+TT+QISQM VGIAVC +   Y   G  + I   N  AG +MY SY  LFLQYA+ RF+ K
Sbjct:    3 YLAFCYVGPKVMANRKPFDLRRPLIAWNFLLSAFSFVGMMRTVPHLVQILYVYGFKYTICAKPTMWYGSGAVGMWTQAFVFSKIPELGDTIFVVLRKKPLIFLHWYHHVTVLLYCWHSYFEQTTYGLYFISMNYTVHALMYLYYGLAGMRIRLCKPYYITTMQISQMVVGIAVCVAGGYYMAMGETKFISRPNFQAGVLMYFSYMLLFLQYALGRFLPK 221
[Close]
BLAST of jgi.p|Trimin1|178214 vs. uniprot
Match: T0R9K8_SAPDV (Elongation of fatty acids protein n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0R9K8_SAPDV)

HSP 1 Score: 239 bits (609), Expect = 6.450e-75
Identity = 118/244 (48.36%), Postives = 162/244 (66.39%), Query Frame = 1 
Query:    7 FLREWSPWGPIGICAVYLLFCYLGTLYMKNRKAYGLNRALMLWNFALAMFSLMGALRTVPHLANVIALKGYKYTITEQGRDWVGGGAVGFWAQMFVFSKIPELGDTVFIVLRKRPLIFLHWYHHVTVLLYCWHSYYNEAAYGLYFAAMNYSVHAVMYLYYALAALRIRLCKPYYVTTLQISQMFVGIAVCCSCWIYYKKGYGEHIKEGNLWAGAIMYASYAFLFLQYAISRFIKKVMSKEDGAV 738
            F ++  P   + +CA+Y + C  G   M++R A+GL  AL LWN  LA FS+MGA+RTVP L N +A++G+ + +  +     G G V FW  +F+FSKIPEL DT+FIVLRK+PLIFLHWYHH+TVL++CWH+Y N +  GL+F AMNY+VH VMY YY LAA+ IR     +VT +Q+ QM VG+AVC S   Y K G    +   NL  G +MY+SY  LFL++ + R+  K  +K+  A+
Sbjct:   36 FCKDTMP-HVVVLCAIYCVLCLGGREVMRSRSAFGLQTALALWNLGLATFSIMGAIRTVPFLLNTLAVRGWHHAVCAEAMPHYGHGPVSFWVTLFIFSKIPELVDTMFIVLRKKPLIFLHWYHHITVLMFCWHAYANLSPSGLFFVAMNYTVHGVMYFYYFLAAIGIRASWAKFVTIIQLLQMVVGVAVCASGVYYVKAGVTCELDRENLKWGILMYSSYFALFLKFFLERYFFKAPAKKTAAI 278
[Close]
BLAST of jgi.p|Trimin1|178214 vs. uniprot
Match: A0A067BVY4_SAPPC (Elongation of fatty acids protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BVY4_SAPPC)

HSP 1 Score: 226 bits (577), Expect = 6.150e-71
Identity = 111/217 (51.15%), Postives = 149/217 (68.66%), Query Frame = 1 
Query:   88 MKNRKAYGLNRALMLWNFALAMFSLMGALRTVPHLANVIALKGYKYTITEQGRDWVGGGAVGFWAQMFVFSKIPELGDTVFIVLRKRPLIFLHWYHHVTVLLYCWHSYYNEAAYGLYFAAMNYSVHAVMYLYYALAALRIRLCKPYYVTTLQISQMFVGIAVCCSCWIYYKKGYGEHIKEGNLWAGAIMYASYAFLFLQYAISRFIKKVMSKEDGAV 738
            M++R A+GL  AL LWN  LA FS+MGA+RTVP L N +A++G+ + +  +     G G V FW  +F+FSKIPEL DT+FIVLRK+PLIFLHWYHH+TVL++CWH+Y N +  GL+F AMNY+VH VMY YY LAA+ IR     +VT +Q+ QM VG+AVC S   Y K G    +   NL  G +MY+SY  LFL++ + R+  K  +K+  A+
Sbjct:    1 MRSRSAFGLQTALALWNLGLATFSIMGAIRTVPFLLNTLAVRGWHHAVCAEAMPHYGHGPVSFWVTLFIFSKIPELVDTMFIVLRKKPLIFLHWYHHITVLMFCWHAYANLSPSGLFFVAMNYTVHGVMYFYYFLAAIGIRASWAKFVTIIQLLQMVVGVAVCASGVYYIKAGVTCELDRENLKWGILMYSSYFALFLKFFLERYFFKAPAKKTAAI 217
[Close]
BLAST of jgi.p|Trimin1|178214 vs. uniprot
Match: A0A485LJ03_9STRA (Elongation of fatty acids protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJ03_9STRA)

HSP 1 Score: 228 bits (580), Expect = 1.170e-70
Identity = 115/225 (51.11%), Postives = 151/225 (67.11%), Query Frame = 1 
Query:   37 IGICAVYLLFCYLGTLYMKNRKAYGLNRALMLWNFALAMFSLMGALRTVPHLANVIALKGYKYTITEQGRDWVGGGAVGFWAQMFVFSKIPELGDTVFIVLRKRPLIFLHWYHHVTVLLYCWHSYYNEAAYGLYFAAMNYSVHAVMYLYYALAALRIRLCKPYYVTTLQISQMFVGIAVCCSCWIYYKKGYGEHIKEGNLWAGAIMYASYAFLFLQYAISRFIKK 711
            I +CAVY +    G   MKN + +GLN AL  WN  LA+FS MG+LRTVP L N +   G  + +  +  +  G G+VGFW  +FVFSKIPEL DT+FIVLRK+PLIFLHWYHH+TVL++CWH+Y N +  GL+F AMNY+VHAVMY YY LAA+ IR+    +VT +Q++QM +G+AVC     Y +      +   NL  G IMY+SY  LFL++ I R+  K
Sbjct:   40 IALCAVYCVLFLGGREVMKNFQPFGLNTALAFWNLGLALFSAMGSLRTVPFLLNSLWTNGIHHNVCGEAFNHYGRGSVGFWITLFVFSKIPELVDTMFIVLRKKPLIFLHWYHHITVLMFCWHAYANLSPSGLFFVAMNYTVHAVMYFYYFLAAINIRVSWAKFVTVIQLAQMVIGVAVCAMGIYYVRSETPCGLDRENLKWGIIMYSSYFVLFLKFFIERYFAK 264
[Close]
BLAST of jgi.p|Trimin1|178214 vs. uniprot
Match: A0A1V9YKT6_9STRA (Elongation of fatty acids protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YKT6_9STRA)

HSP 1 Score: 227 bits (579), Expect = 1.600e-70
Identity = 114/239 (47.70%), Postives = 148/239 (61.92%), Query Frame = 1 
Query:    7 FLREWSP-------WGPIGICAVYLLFCYLGTLYMKNRKAYGLNRALMLWNFALAMFSLMGALRTVPHLANVIALKGYKYTITEQGRDWVGGGAVGFWAQMFVFSKIPELGDTVFIVLRKRPLIFLHWYHHVTVLLYCWHSYYNEAAYGLYFAAMNYSVHAVMYLYYALAALRIRLCKPYYVTTLQISQMFVGIAVCCSCWIYYKKGYGEHIKEGNLWAGAIMYASYAFLFLQYAISRF 702
            F+  W P          IG+CA+Y + CY G  +M  R  Y L  AL  WN  LA FS  GA+RTVP L + I  +G+  +I  +  D  G G  G W  +F+FSK+PEL DT FIV+RK+PLIFLHWYHH+TVL++CWH++   +A GLYF AMNYSVHA+MY YY L A+  R      VT +Q+SQM VG+AVC     Y  +G   H+   NL  G +MY+SY  LFL++ I R+
Sbjct:   25 FVLSWQPSFCADSMQAAIGLCALYCVLCYAGRHWMATRAPYDLKTALAGWNLLLATFSFCGAVRTVPFLLDSIYQRGWYQSICSEATDHYGNGPTGLWVALFIFSKVPELVDTFFIVVRKKPLIFLHWYHHITVLMFCWHAFAVRSASGLYFVAMNYSVHAIMYFYYFLTAVGYRPRWALMVTAVQLSQMVVGVAVCTMSVFYIHRGDSCHVDHANLKWGILMYSSYLVLFLKFFIERY 263
[Close]
BLAST of jgi.p|Trimin1|178214 vs. uniprot
Match: A0A6G0WL95_9STRA (Elongation of fatty acids protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WL95_9STRA)

HSP 1 Score: 224 bits (570), Expect = 3.340e-69
Identity = 110/229 (48.03%), Postives = 151/229 (65.94%), Query Frame = 1 
Query:   37 IGICAVYLLFCYLGTLYMKNRKAYGLNRALMLWNFALAMFSLMGALRTVPHLANVIALKGYKYTITEQGRDWVGGGAVGFWAQMFVFSKIPELGDTVFIVLRKRPLIFLHWYHHVTVLLYCWHSYYNEAAYGLYFAAMNYSVHAVMYLYYALAALRIRLCKPYYVTTLQISQMFVGIAVCCSCWIYYKKGYGEHIKEGNLWAGAIMYASYAFLFLQYAISRFIKKVMSK 723
            + +CA+Y + C  G   MKN   +GLN++L LWN  LA+FS +G++RTVP L N +   G  + +  +     G G V  W  +F+FSKIPEL DT+FIVLRK+PLIFLHWYHH+TVL++CWH+Y + +  GL+F AMNY+VHAVMY YY LAA+ IR     +VT +Q++QM +G+AVC     Y + G    +   NL  G IMY+SY  LFL++ I R+  K  +K
Sbjct:   40 VVLCAIYCILCLGGREVMKNFAPFGLNKSLALWNLGLAVFSFIGSVRTVPFLLNSLYTNGLHHNVCSEAMPHYGHGPVALWTTLFIFSKIPELVDTMFIVLRKKPLIFLHWYHHITVLMFCWHAYAHLSPSGLFFVAMNYTVHAVMYFYYFLAAVGIRASWAKFVTVIQLTQMVIGVAVCAMGVYYLRSGTPCGLDRENLKWGIIMYSSYFALFLKFFIERYFMKKPAK 268
[Close]
BLAST of jgi.p|Trimin1|178214 vs. uniprot
Match: A0A024TAB4_9STRA (Elongation of fatty acids protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TAB4_9STRA)

HSP 1 Score: 224 bits (570), Expect = 3.440e-69
Identity = 112/225 (49.78%), Postives = 149/225 (66.22%), Query Frame = 1 
Query:   37 IGICAVYLLFCYLGTLYMKNRKAYGLNRALMLWNFALAMFSLMGALRTVPHLANVIALKGYKYTITEQGRDWVGGGAVGFWAQMFVFSKIPELGDTVFIVLRKRPLIFLHWYHHVTVLLYCWHSYYNEAAYGLYFAAMNYSVHAVMYLYYALAALRIRLCKPYYVTTLQISQMFVGIAVCCSCWIYYKKGYGEHIKEGNLWAGAIMYASYAFLFLQYAISRFIKK 711
            I +CA+Y + C  G   MKN   +GLN AL  WNF LA+FS +G++RTVP L N +  +G  + +  +     G G VG W  +F+FSKIPEL DT+FIVLRK+PLIFLHWYHH+TVL++CWH+Y N +  GL+F AMNY+VHAVMY YY LAA+ IR     +VT +Q++QM VG+AV  +   Y + G    +   NL    IMY+SY  LFL++ I R+  K
Sbjct:   40 IALCAIYCVLCLGGREVMKNFAPFGLNNALAAWNFGLALFSAIGSIRTVPFLLNSLVTRGVYFNVCSEAFPHYGRGPVGLWVTLFIFSKIPELIDTMFIVLRKKPLIFLHWYHHITVLMFCWHAYANLSPMGLFFVAMNYTVHAVMYFYYFLAAIGIRAPWAKFVTVIQLAQMVVGVAVSVAGVYYIRSGAPCLLDRENLKWAIIMYSSYFALFLKFFIERYFLK 264
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178214 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLW9_9STRA1.220e-201100.00Elongation of fatty acids protein n=1 Tax=Tribonem... [more]
A0A835ZI52_9STRA4.720e-11764.64Elongation of fatty acids protein n=1 Tax=Tribonem... [more]
A0A6H5KTN4_9PHAE1.490e-10060.25Elongation of fatty acids protein n=1 Tax=Ectocarp... [more]
D8LFZ1_ECTSI1.170e-9562.10Elongation of fatty acids protein n=1 Tax=Ectocarp... [more]
T0R9K8_SAPDV6.450e-7548.36Elongation of fatty acids protein n=2 Tax=Saproleg... [more]
A0A067BVY4_SAPPC6.150e-7151.15Elongation of fatty acids protein n=1 Tax=Saproleg... [more]
A0A485LJ03_9STRA1.170e-7051.11Elongation of fatty acids protein n=1 Tax=Aphanomy... [more]
A0A1V9YKT6_9STRA1.600e-7047.70Elongation of fatty acids protein n=1 Tax=Achlya h... [more]
A0A6G0WL95_9STRA3.340e-6948.03Elongation of fatty acids protein n=1 Tax=Aphanomy... [more]
A0A024TAB4_9STRA3.440e-6949.78Elongation of fatty acids protein n=1 Tax=Aphanomy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_166contigContig_166:172963..177638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|178214|e_gw1.166.111.1
BRITEko00000,ko00001,ko00002,ko01000,ko01004
KEGG rclassRC00004,RC00039,RC02728,RC02888,RC02997
KEGG ReactionR07758,R07762,R09419,R10825
KEGG ModuleM00415
KEGG Pathwayko00062,ko01040,ko01110,ko01212,map00062,map01040,map01110,map01212
KEGG koko:K10203
EC2.3.1.199
Descriptionvery-long-chain 3-ketoacyl-CoA synthase activity
COG categoryI
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3071@1|root,KOG3072@2759|Eukaryota
Evalue1.91e-96
Seed ortholog2880.D8LFZ1
Hectar predicted targeting categorysignal anchor
TranscriptId178536
TrackFilteredModels1
ProteinId178214
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178214gene_13312Tribonema minus UTEX_B_3156 geneContig_166 172963..177638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178214Trimin1|178214|e_gw1.166.111.1Tribonema minus UTEX_B_3156 polypeptideContig_166 172963..177638 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13312_1exon_13312_1Tribonema minus UTEX_B_3156 exonContig_166 172963..173079 +
exon_13312_2exon_13312_2Tribonema minus UTEX_B_3156 exonContig_166 173163..173330 +
exon_13312_3exon_13312_3Tribonema minus UTEX_B_3156 exonContig_166 173605..173726 +
exon_13312_4exon_13312_4Tribonema minus UTEX_B_3156 exonContig_166 174303..174438 +
exon_13312_5exon_13312_5Tribonema minus UTEX_B_3156 exonContig_166 175026..175085 +
exon_13312_6exon_13312_6Tribonema minus UTEX_B_3156 exonContig_166 175628..175686 +
exon_13312_7exon_13312_7Tribonema minus UTEX_B_3156 exonContig_166 177482..177638 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13312CDS_13312Tribonema minus UTEX_B_3156 CDSContig_166 172963..173079 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13312 ID=mRNA_13312|Name=jgi.p|Trimin1|178214|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=819bp|location=Sequence derived from alignment at Contig_166:172963..177638+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTTTCTACGAGAATGGTCACCGTGGGGACCCATAGGCATCTGCGC
CGTGTACCTGCTCTTCTGCTACCTGGGGACGCTGTACATGAAGAACCGGA
AAGCCTACGGCCTTAACCGGGCGCTGATGCTTTGGAACTTTGCGCTGGCG
ATGTTCAGCCTCATGGGTGCTCTGCGGACAGTGCCCCATTTGGCAAATGT
CATCGCGCTCAAGGGATACAAGTACACCATCACCGAGCAAGGCAGAGATT
GGGTGGGAGGAGGGGCCGTCGGCTTTTGGGCTCAGATGTTCGTCTTTTCC
AAGATTCCAGAGCTGGGGGACACGGTGTTCATTGTGCTGCGGAAGCGGCC
ACTGATCTTCCTGCACTGGTACCACCACGTTACCGTGCTGCTCTATTGCT
GGCACAGCTACTACAACGAGGCTGCCTACGGACTGTACTTTGCGGCAATG
AACTATTCGGTGCACGCGGTCATGTACCTGTACTATGCTCTGGCGGCGCT
GAGGATCCGGCTCTGCAAGCCTTACTACGTCACCACATTGCAGATATCTC
AAATGTTTGTGGGGATTGCTGTGTGCTGCTCATGCTGGATCTACTACAAG
AAGGGCTATGGCGAACACATCAAGGAGGGTAACCTTTGGGCTGGGGCTAT
CATGTATGCCAGCTACGCCTTCTTGTTTCTGCAGTACGCCATTTCCCGCT
TCATCAAGAAGGTTATGAGCAAGGAGGACGGTGCTGTCACGATGAACGGC
AATGGCAGGAAGGCGGCGGCCACCAATGGCACAACAAATGGCACCAAGGC
GGGCAGCAAGCAAGACTAA
back to top

protein sequence of jgi.p|Trimin1|178214

>Trimin1|178214|e_gw1.166.111.1 ID=Trimin1|178214|e_gw1.166.111.1|Name=jgi.p|Trimin1|178214|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=273bp
MVFLREWSPWGPIGICAVYLLFCYLGTLYMKNRKAYGLNRALMLWNFALA
MFSLMGALRTVPHLANVIALKGYKYTITEQGRDWVGGGAVGFWAQMFVFS
KIPELGDTVFIVLRKRPLIFLHWYHHVTVLLYCWHSYYNEAAYGLYFAAM
NYSVHAVMYLYYALAALRIRLCKPYYVTTLQISQMFVGIAVCCSCWIYYK
KGYGEHIKEGNLWAGAIMYASYAFLFLQYAISRFIKKVMSKEDGAVTMNG
NGRKAAATNGTTNGTKAGSKQD*
back to top

mRNA from alignment at Contig_166:172963..177638+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13312 ID=mRNA_13312|Name=jgi.p|Trimin1|178214|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4676bp|location=Sequence derived from alignment at Contig_166:172963..177638+ (Tribonema minus UTEX_B_3156 )
ATGGTCTTTCTACGAGAATGGTCACCGTGGGGACCCATAGGCATCTGCGC
CGTGTACCTGCTCTTCTGCTACCTGGGGACGCTGTACATGAAGAACCGGA
AAGCCTACGGCCTTAACGTGAGCAGCGCCGCTTGCTGGCATGCGCCATTG
CCACCGGAGGGCTCATTCACCGTGACCCTATCACTTTGTGTGCGTTGCAG
CGGGCGCTGATGCTTTGGAACTTTGCGCTGGCGATGTTCAGCCTCATGGG
TGCTCTGCGGACAGTGCCCCATTTGGCAAATGTCATCGCGCTCAAGGGAT
ACAAGTACACCATCACCGAGCAAGGCAGAGATTGGGTGGGAGGAGGGGCC
GTCGGCTTTTGGGCTCAGGTGAATCACTGAGAACACCTCTTGCAATCGGC
ACGACAACCTGCTCAGTTGCTGCAACACGGCTCATGTACAGCGCGGAGGT
GTGCTGGTCTTCAGCAGGTGATGAAGATGGTCAGGCTCAGGATTTGTCCA
CTGGCCGGCGGAGATAAACCTGCCAACTGCCACTTCTGCGCTGGCGCACA
CAAAAGCTTGTTTCTGCTACTAATCCACACCAACAATGCCATTGATGTCA
TCTGATGTGACCAGCTCTGTTGGTGGTGTTGGTGTCAATCAGATGTTCGT
CTTTTCCAAGATTCCAGAGCTGGGGGACACGGTGTTCATTGTGCTGCGGA
AGCGGCCACTGATCTTCCTGCACTGGTACCACCACGTTACCGTGCTGCTC
TATTGCTGGCACAGGTGAGTGCGCTGGCGACATGATGCGATGCTTGTTTT
GTGAAGAAAAAGTGAGCTTTGACGATGCTTCAATGGCATGTGCTTGGGAC
ATGTTACTTCTGGAAAGTGGGAAACGGGGATGTGAGCATTCTTGAAGCAC
ATAGGCGCTGTCGCAATTGATCAGCAGCACTCCTCTACTTGCTTGCAACT
TTGGGTAAAGGTGGTGTCCGTATAAATCATACCGTTGGGGTGCATAGCAT
GTGAGTTGCATTGCACTGAGGAATTGCTCGATAGCTTTCCGTGCAGTGGC
TCTATAGAACAGAATGATGCTGAAGTCCAAGCTACACACAATTCATGTAT
GGTACACTGATTTAGTACATGTGTGCAAATTGTTCATGTTGGCAGGTTCG
GCATTGTTGCGCACACGCGAAGGGCACATTCAATGTGCCACATTGTATCA
CTTGCAGCGCAAAGCACCGTAATCATAAATCTTCTTTAGATGCTGCCTGA
AGTCAGCGCCAGTCAACTCTGGTCATGTTTTGCCATCATCCATCAAAAGC
TAGACACTTTGCCCTGGTTGCCTGCTGCAACACCGCGCAGCTACTACAAC
GAGGCTGCCTACGGACTGTACTTTGCGGCAATGAACTATTCGGTGCACGC
GGTCATGTACCTGTACTATGCTCTGGCGGCGCTGAGGATCCGGCTCTGCA
AGCCTTACTACGTCACCACATTGCAGGTACGCTCAATAGTCATGATTGCA
CAGACGCTGTTGCAGTGCTGCATGTTGGCAAGGCAGCTTTCATGCTGTGG
AGGTGTAACCCTACTTTTCAGTTAAGTGTTTACTCCACATCGGTTAACGT
TGTGCAGCATGTATTGTTGCCTGCCTGTATGACTTCCTGTTTACGAATTG
TCAAATGCATACTTGTTGATCTCCTGTGAGAATGTGTGCAAAAAGCTGCT
GTATACACCGTACACAGCTTCACAGTGCCTTCACTCCCTGTGCACCAGTA
ACTCGTGATGGTACGGTAGCATTAACGATTGGCCGACAATCCTTGTTTTG
ACAGTGCCGTCATTGACATCTATCCTTATCATTTGCATATGGCATCCTCC
ATCCATCGCCCATGTGACATGTCACCCGGAGATCAGTCTTTCGCTTGTCA
CAACATCATCGATGCTTTCCCTGCTTGTGCATTGAATTACTGATGATCCA
GTGCATGCTGGTTTTGAAATTATTGCACCTGCAATTAACCAGACAGGCAT
AGAGCTGCCAATACTCTTGTCGTGACCCCGCTTTCAATGTGTCTGCTTTT
CGTCTCGCTGCAGATATCTCAAATGTTTGTGGGGATTGCTGTGTGCTGCT
CATGCTGGATCTACTACAAGAAGGTGCGCTGTCATACACATATTTATACG
ATATATATGTGCATGTTATGTTGCCATGCACTCAGGCTATGGATTACAGC
TGTAGCGGATGCAGTGCACAGTGCATTTGACATTTACGTTACGTACTGAG
TCATTTCTGCTGCTGGTGTGACCAGGCTGGTGCTCTGTGAAACAATGCTC
TCACTCAAGGTCGGTACACAAGCAGTTCCCATATCATGCAGTAGGTAGTG
GATGGCGCAACAACGCTATTAGGTAGGGTTCGCGTTCAGTTTCCAGTTCA
TGCAGTAGGCGGTGGATGGCGTAGGCGACGGTGTGCTAGAGCTATTCGAT
TTTCTTGCAATATCAACATACTAGCCGTTGCAAAGCGGGCTGTGTGATGT
TTACTGGTGTGTGGCATATGGCTGTGACACTTGCATGTGACATGACATTG
TGACACTGACATGACAGTGCGCCTCTCCGTCCCTCTGCCTGTTGTCACCA
CTGGCACTTTCTGCGATGACTGTACTGGGTGGTGGGATAAATGTGTGGAT
TATGCGGATGGACAGGGCTATGGCGAACACATCAAGGAGGGTAACCTTTG
GGCTGGGGCTATCATGTATGCCAGGTAAGGTTGCACGTACGGTATGAATA
TACATTGATGTGTGAAGCTACCTGCTGATGTTGTGGTCACGTCCGGTGTG
AAAGATCAGCACAGTTTTGGCTGAGAGCAGGTGTGCATCACAAGTTGTTA
CATTGCATGCACACAAGCGGACCCGACCGCCGTGATAGCATGAGGCTTCT
GACATCACCATCTGTGCCACATGGTAGACTTTATACTGTGCAGTCAATAC
AACTTCAATCGCCACGTACAACTTTTATGAATTTCGCTGACCAGGTCAGC
TAGTGGCACAGTTTAGGGCCAGCTGCGGGCAATAAACCACATCTTCCAGA
ATGTGGCTTCGCAGTGAGATTGCATCCGGTCTCACACTGCCTTGCACCAT
ACGAGAGTGCTGCAGGCTCTTTTTACGTAAATCATGTGTAGGCAGTGATC
TTCCAACCATGCGTACGCTCTCGCGGAATTATCACATGTGCCCACGTACA
CATCATCTCGCACAGTGACAATTGAAAAGCAGTCAGCAAGCAACTGTCTT
GCTCAAAACAGAAGGTGAAAAGGAGGTACCCATACATGCATATAGCGTCT
GTGCACGCCCCTGATGTTGTCAGTGCTGAGCCATACAGTTGACTGCAGCG
CGATTTTTTGCATTCAGGACACTTACATCAGGGCTACATTGCACCTCACC
TCAGACGGCCTTAGCGCAACTGAGTTCATGTTTCGAACTAGGCTAGACTA
ATTTAACAATGGCGCAACTAACGCAACTTTCATCAGGACTTCTAGTCCGT
CTACAGTTACTATGAAGGCCCATGCAGCTTACATAAGGACTTGGGATAGG
GTGACAGTCAGGATCATTTCAAGTCAAAGCACAAACCCTGAGCAAAACTA
ATGAGTAAACTTGCGAGTAATGAGTAGTACTCATGAGTGAACTTGCAAGT
ATTGCCAGTTGCGCCACGAGTCACTTTGGCCGCCAGCTAGCACAAGTGGC
GCAACCTGTTTGGCGCAAGGGATTTAGTTTAGGCGCCAGCCCTGACCTAC
GTGTGCCACAGAAACGAATCTGAATGCCGTGTCAATGCCATGCCAAGGCG
TTCCAATATGCTGTCAGGTCAAGTTCATGGATATTGAGGCGCTGCAGTTC
AAGCTGCAGGGACAATGGCTATATATGTTGAGGTTTGGCTTGCTTGAACA
CGCTGTAGTGATGACAAAGTCACTCACTGTGGCAGAGGAGGACATTGGGT
GGGCTTATCGCACATATGCACAACAGCACCTTTGTTAAGACAGCCTGACC
TTCAAAGTCATGACGTTCTTGCAGGATTCTATGTCACTTGACTGTACATA
CCAAACCGTGTAGAGTATTTAGGCACATGCAATGGAGGGCTCGTGGGGTC
ATACCCGCAATGGCATGGCACGGACTCACTTGCTGTTTGTGCATGGAAGC
ATACGCTTTTCCCATGTGGCAGGTATGCGTTGGTGTGTATTCCTGCAGTG
ATGCCGGTTGTGGCTGTGGCTGCAGGCAGCGTGCTCACAGCACAGATGTT
GCATGTTGATGAATGATCGCACATACTGTTGAAGCATTGCTGTCAGTCTT
ACGACCACCAAGCAAAGTGGTTGTGGTATCTTCAAATCATTGGCTTTACG
GCTCTTGCTGTTGCACCACTCGGGACTCATGTATGGTGCTTGCCATGCAT
ATTCTGAACATCACATTGAACAATTCATGAAGCGCACTCCTTCTTGCCGC
ATGACTTGCTGCGGGCGCTTGCACTGAGCTGATCAGCCAATGGCTCGTAA
ATGTTGATTGCTGCCGCAGCTACGCCTTCTTGTTTCTGCAGTACGCCATT
TCCCGCTTCATCAAGAAGGTTATGAGCAAGGAGGACGGTGCTGTCACGAT
GAACGGCAATGGCAGGAAGGCGGCGGCCACCAATGGCACAACAAATGGCA
CCAAGGCGGGCAGCAAGCAAGACTAA
back to top

Coding sequence (CDS) from alignment at Contig_166:172963..177638+

>mRNA_13312 ID=mRNA_13312|Name=jgi.p|Trimin1|178214|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=819bp|location=Sequence derived from alignment at Contig_166:172963..177638+ (Tribonema minus UTEX_B_3156 )
ATGGTCTTTCTACGAGAATGGTCACCGTGGGGACCCATAGGCATCTGCGC
CGTGTACCTGCTCTTCTGCTACCTGGGGACGCTGTACATGAAGAACCGGA
AAGCCTACGGCCTTAACCGGGCGCTGATGCTTTGGAACTTTGCGCTGGCG
ATGTTCAGCCTCATGGGTGCTCTGCGGACAGTGCCCCATTTGGCAAATGT
CATCGCGCTCAAGGGATACAAGTACACCATCACCGAGCAAGGCAGAGATT
GGGTGGGAGGAGGGGCCGTCGGCTTTTGGGCTCAGATGTTCGTCTTTTCC
AAGATTCCAGAGCTGGGGGACACGGTGTTCATTGTGCTGCGGAAGCGGCC
ACTGATCTTCCTGCACTGGTACCACCACGTTACCGTGCTGCTCTATTGCT
GGCACAGCTACTACAACGAGGCTGCCTACGGACTGTACTTTGCGGCAATG
AACTATTCGGTGCACGCGGTCATGTACCTGTACTATGCTCTGGCGGCGCT
GAGGATCCGGCTCTGCAAGCCTTACTACGTCACCACATTGCAGATATCTC
AAATGTTTGTGGGGATTGCTGTGTGCTGCTCATGCTGGATCTACTACAAG
AAGGGCTATGGCGAACACATCAAGGAGGGTAACCTTTGGGCTGGGGCTAT
CATGTATGCCAGCTACGCCTTCTTGTTTCTGCAGTACGCCATTTCCCGCT
TCATCAAGAAGGTTATGAGCAAGGAGGACGGTGCTGTCACGATGAACGGC
AATGGCAGGAAGGCGGCGGCCACCAATGGCACAACAAATGGCACCAAGGC
GGGCAGCAAGCAAGACTAA
back to top