mRNA_13301 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155917
Unique NamemRNA_13301
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|155917 vs. uniprot
Match: A0A835Z7M4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7M4_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.170e-31
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 QNTGRWTYSEHCLFLKGLDAHGKAWKKIASLIKTRTVVQIRTHAQKYFQKLAK 159
            QNTGRWTYSEHCLFLKGLDAHGKAWKKIASLIKTRTVVQIRTHAQKYFQKLAK
Sbjct:    1 QNTGRWTYSEHCLFLKGLDAHGKAWKKIASLIKTRTVVQIRTHAQKYFQKLAK 53
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BLAST of jgi.p|Trimin1|155917 vs. uniprot
Match: D7G656_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G656_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.690e-22
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 QNTGRWTYSEHCLFLKGLDAHGKAWKKIASLIKTRTVVQIRTHAQKYFQKLAK 159
            +NTGRWTY EH LFL+GL+ HGK WKKIASLIKTRTVVQIRTHAQKYFQK+AK
Sbjct:    4 KNTGRWTYDEHRLFLRGLELHGKGWKKIASLIKTRTVVQIRTHAQKYFQKIAK 56
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BLAST of jgi.p|Trimin1|155917 vs. uniprot
Match: A0A6H5L4H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H1_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.450e-22
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 QNTGRWTYSEHCLFLKGLDAHGKAWKKIASLIKTRTVVQIRTHAQKYFQKLAK 159
            +NTGRWTY EH LFL+GL+ HGK WKKIASLIKTRTVVQIRTHAQKYFQK+AK
Sbjct:  572 ENTGRWTYDEHRLFLRGLELHGKGWKKIASLIKTRTVVQIRTHAQKYFQKIAK 624
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BLAST of jgi.p|Trimin1|155917 vs. uniprot
Match: A0A6U4FI15_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4FI15_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.820e-22
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 QNTGRWTYSEHCLFLKGLDAHGKAWKKIASLIKTRTVVQIRTHAQKYFQKLAK 159
            +NTGRW+Y EH LFLKGL+ HGK WKKIA LIKTRTVVQIRTHAQKYFQKLAK
Sbjct:   29 ENTGRWSYEEHRLFLKGLEMHGKGWKKIAELIKTRTVVQIRTHAQKYFQKLAK 81
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BLAST of jgi.p|Trimin1|155917 vs. uniprot
Match: W7TWM0_9STRA (SANT/Myb domain protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWM0_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.560e-21
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 QNTGRWTYSEHCLFLKGLDAHGKAWKKIASLIKTRTVVQIRTHAQKYFQKLAK 159
            +NTGRWT  EH LFLKGL+ HGK WKKIA LIKTRTVVQIRTHAQKYFQKLAK
Sbjct:   98 ENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAK 150
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BLAST of jgi.p|Trimin1|155917 vs. uniprot
Match: A0A8J9S9N3_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S9N3_PHATR)

HSP 1 Score: 92.8 bits (229), Expect = 1.570e-21
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 QNTGRWTYSEHCLFLKGLDAHGKAWKKIASLIKTRTVVQIRTHAQKYFQKLAK 159
            +NTGRWT  EH LFL+GL+ HGK WKKIASLIK+RTVVQIRTHAQKYFQKLAK
Sbjct:  115 ENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAK 167
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BLAST of jgi.p|Trimin1|155917 vs. uniprot
Match: A0A1Z5KDK7_FISSO (Protein MYSM1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDK7_FISSO)

HSP 1 Score: 92.8 bits (229), Expect = 8.620e-21
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 QNTGRWTYSEHCLFLKGLDAHGKAWKKIASLIKTRTVVQIRTHAQKYFQKLAK 159
            +NTGRWT  EH LFL+GL+ HGK WKKIASLIK+RTVVQIRTHAQKYFQKLAK
Sbjct:   96 ENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAK 148
[Close]
BLAST of jgi.p|Trimin1|155917 vs. uniprot
Match: B7GAW9_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GAW9_PHATC)

HSP 1 Score: 92.8 bits (229), Expect = 9.310e-21
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 QNTGRWTYSEHCLFLKGLDAHGKAWKKIASLIKTRTVVQIRTHAQKYFQKLAK 159
            +NTGRWT  EH LFL+GL+ HGK WKKIASLIK+RTVVQIRTHAQKYFQKLAK
Sbjct:  115 ENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAK 167
[Close]
BLAST of jgi.p|Trimin1|155917 vs. uniprot
Match: A0A6S8P3T4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8P3T4_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 9.620e-21
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 QNTGRWTYSEHCLFLKGLDAHGKAWKKIASLIKTRTVVQIRTHAQKYFQKLAK 159
            +NTGRWT  EH LFL+GL+ HGK WKKIASLIK+RTVVQIRTHAQKYFQKLAK
Sbjct:   43 ENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAK 95
[Close]
BLAST of jgi.p|Trimin1|155917 vs. uniprot
Match: A0A7S1V9A3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V9A3_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 9.790e-21
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 QNTGRWTYSEHCLFLKGLDAHGKAWKKIASLIKTRTVVQIRTHAQKYFQKLAK 159
            +NTGRWT  EH LFL+GL+ HGK WKKIASLIK+RTVVQIRTHAQKYFQKLAK
Sbjct:  165 ENTGRWTADEHRLFLQGLEEHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAK 217
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155917 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7M4_9STRA2.170e-31100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7G656_ECTSI1.690e-2284.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4H1_9PHAE2.450e-2284.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6U4FI15_9STRA3.820e-2284.91Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
W7TWM0_9STRA1.560e-2184.91SANT/Myb domain protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A8J9S9N3_PHATR1.570e-2183.02Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
A0A1Z5KDK7_FISSO8.620e-2183.02Protein MYSM1 n=2 Tax=Fistulifera solaris TaxID=15... [more]
B7GAW9_PHATC9.310e-2183.02Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A6S8P3T4_9STRA9.620e-2183.02Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1V9A3_9STRA9.790e-2183.02Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_166contigContig_166:134169..134327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155917|gw1.166.109.1
BRITEko00000,ko01000,ko01002,ko03000
KEGG koko:K03797,ko:K09391
EC3.4.21.102
Descriptionubiquitin modification-dependent histone binding
COG categoryK
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0724@1|root,KOG0724@2759|Eukaryota
Evalue2.77e-23
Seed ortholog2880.D7G656
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-11_005250.1
TranscriptId156239
TrackFilteredModels1
ProteinId155917
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155917gene_13301Tribonema minus UTEX_B_3156 geneContig_166 134169..134327 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13301_1exon_13301_1Tribonema minus UTEX_B_3156 exonContig_166 134169..134327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13301CDS_13301Tribonema minus UTEX_B_3156 CDSContig_166 134169..134327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155917Trimin1|155917|gw1.166.109.1Tribonema minus UTEX_B_3156 polypeptideContig_166 134169..134327 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13301 ID=mRNA_13301|Name=jgi.p|Trimin1|155917|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=159bp|location=Sequence derived from alignment at Contig_166:134169..134327+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGAACACGGGCCGCTGGACGTACAGCGAGCACTGCCTCTTTCTCAAAGG
CCTCGACGCCCACGGCAAGGCCTGGAAAAAGATTGCCAGCTTGATAAAAA
CGCGAACGGTGGTCCAGATCCGAACACACGCGCAGAAGTACTTCCAGAAG
CTGGCCAAG
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protein sequence of jgi.p|Trimin1|155917

>Trimin1|155917|gw1.166.109.1 ID=Trimin1|155917|gw1.166.109.1|Name=jgi.p|Trimin1|155917|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=53bp
QNTGRWTYSEHCLFLKGLDAHGKAWKKIASLIKTRTVVQIRTHAQKYFQK
LAK
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mRNA from alignment at Contig_166:134169..134327+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13301 ID=mRNA_13301|Name=jgi.p|Trimin1|155917|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=159bp|location=Sequence derived from alignment at Contig_166:134169..134327+ (Tribonema minus UTEX_B_3156 )
CAGAACACGGGCCGCTGGACGTACAGCGAGCACTGCCTCTTTCTCAAAGG
CCTCGACGCCCACGGCAAGGCCTGGAAAAAGATTGCCAGCTTGATAAAAA
CGCGAACGGTGGTCCAGATCCGAACACACGCGCAGAAGTACTTCCAGAAG
CTGGCCAAG
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Coding sequence (CDS) from alignment at Contig_166:134169..134327+

>mRNA_13301 ID=mRNA_13301|Name=jgi.p|Trimin1|155917|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=159bp|location=Sequence derived from alignment at Contig_166:134169..134327+ (Tribonema minus UTEX_B_3156 )
CAGAACACGGGCCGCTGGACGTACAGCGAGCACTGCCTCTTTCTCAAAGG
CCTCGACGCCCACGGCAAGGCCTGGAAAAAGATTGCCAGCTTGATAAAAA
CGCGAACGGTGGTCCAGATCCGAACACACGCGCAGAAGTACTTCCAGAAG
CTGGCCAAG
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