mRNA_13333 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|138244
Unique NamemRNA_13333
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|138244 vs. uniprot
Match: A0A835Z5V3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5V3_9STRA)

HSP 1 Score: 341 bits (874), Expect = 1.930e-118
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1 
Query:    1 MIDRTAEFQGCIRVLHQHDGRPDQRPQYEAPQPTDFTKAVSALALSLEGTAKLIEQLMRLVGRKGTSNDPTMEITDVSRLFKGDMDAVQQELSALQAFIDGRSGKRGAPAPGSQRHKHSLYMLDALKQLAQEQVAAFQAALKQRNAVMRELNDRRKVYSTTRSVGLSVQMNSPLF 525
            MIDRTAEFQGCIRVLHQHDGRPDQRPQYEAPQPTDFTKAVSALALSLEGTAKLIEQLMRLVGRKGTSNDPTMEITDVSRLFKGDMDAVQQELSALQAFIDGRSGKRGAPAPGSQRHKHSLYMLDALKQLAQEQVAAFQAALKQRNAVMRELNDRRKVYSTTRSVGLSVQMNSPLF
Sbjct:    1 MIDRTAEFQGCIRVLHQHDGRPDQRPQYEAPQPTDFTKAVSALALSLEGTAKLIEQLMRLVGRKGTSNDPTMEITDVSRLFKGDMDAVQQELSALQAFIDGRSGKRGAPAPGSQRHKHSLYMLDALKQLAQEQVAAFQAALKQRNAVMRELNDRRKVYSTTRSVGLSVQMNSPLF 175
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BLAST of jgi.p|Trimin1|138244 vs. uniprot
Match: A0A6H5KU27_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KU27_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 2.110e-28
Identity = 70/184 (38.04%), Postives = 112/184 (60.87%), Query Frame = 1 
Query:    1 MIDRTAEFQGCIRVLH------QHDGRPDQ-RPQYEAP--QPTDFTKAVSALALSLEGTAKLIEQLMRLVGRKGTSNDPTMEITDVSRLFKGDMDAVQQELSALQAFIDGRSGKRGAPAPGSQRHKHSLYMLDALKQLAQEQVAAFQAALKQRNAVMRELNDRRKVYSTTRSVGLSVQMNSPLF 525
            M DRT EF G +           + G     R Q +    + ++F +  +++A+  EGT++LI +L +LVGRKG SN+P  EI+DV +LF+GDM  +Q+++S+LQ + DG  G RG+P   SQR  H  +++  L++ AQE   AF+ AL  R AV ++ N+R++ +S +R V  + Q++ PLF
Sbjct:    3 MTDRTKEFHGAVSAFRPTVTAVNNSGEAALIRAQTDLGYRKTSEFLQLAASVAVGFEGTSRLIGRLKKLVGRKGFSNNPAAEISDVMKLFEGDMAGLQKDISSLQRYADG--GTRGSPPANSQRQMHCAFIVTTLRRSAQEHTKAFRDALMLRAAVEKQQNERQRKFSHSRGVAPATQLDYPLF 184
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138244 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z5V3_9STRA1.930e-118100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6H5KU27_9PHAE2.110e-2838.04t-SNARE coiled-coil homology domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_166contigContig_166:279699..280223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|138244|gw1.166.47.1
BRITEko00000,ko00001,ko04131
KEGG Pathwayko04130,map04130
KEGG koko:K08490
GOsGO:0000003,GO:0000139,GO:0000149,GO:0000278,GO:0000280,GO:0000281,GO:0000902,GO:0000910,GO:0001505,GO:0002164,GO:0002376,GO:0002520,GO:0002790,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0005886,GO:0006810,GO:0006836,GO:0006873,GO:0006875,GO:0006878,GO:0006886,GO:0006887,GO:0006888,GO:0006891,GO:0006900,GO:0006901,GO:0006903,GO:0006904,GO:0006906,GO:0006996,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0008104,GO:0008150,GO:0008283,GO:0008361,GO:0009306,GO:0009653,GO:0009791,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010256,GO:0010604,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016079,GO:0016081,GO:0016192,GO:0016197,GO:0016482,GO:0017156,GO:0019222,GO:0019725,GO:0019953,GO:0022402,GO:0022406,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0023061,GO:0030003,GO:0030097,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031201,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0033043,GO:0033116,GO:0033206,GO:0034498,GO:0034613,GO:0035166,GO:0035167,GO:0042147,GO:0042175,GO:0042176,GO:0042592,GO:0042802,GO:0042803,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045055,GO:0045184,GO:0045732,GO:0045786,GO:0045930,GO:0046903,GO:0046907,GO:0046916,GO:0046983,GO:0047485,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048232,GO:0048278,GO:0048280,GO:0048284,GO:0048285,GO:0048308,GO:0048313,GO:0048489,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048534,GO:0048542,GO:0048569,GO:0048609,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0051128,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051301,GO:0051321,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0051726,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0060255,GO:0060305,GO:0061024,GO:0061025,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090066,GO:0090114,GO:0090166,GO:0090174,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098771,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140013,GO:0140029,GO:0140056,GO:1903008,GO:1903046,GO:1903047,GO:1903358
Preferred nameSTX5
Descriptionvesicle docking
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0812@1|root,KOG0812@2759|Eukaryota
Evalue3.42e-29
Seed ortholog2880.D8LR19
Hectar predicted targeting categoryother localisation
TranscriptId138566
TrackFilteredModels1
ProteinId138244
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138244gene_13333Tribonema minus UTEX_B_3156 geneContig_166 279699..280223 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13333_1exon_13333_1Tribonema minus UTEX_B_3156 exonContig_166 279699..280223 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13333CDS_13333Tribonema minus UTEX_B_3156 CDSContig_166 279699..280223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138244Trimin1|138244|gw1.166.47.1Tribonema minus UTEX_B_3156 polypeptideContig_166 279699..280223 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13333 ID=mRNA_13333|Name=jgi.p|Trimin1|138244|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=525bp|location=Sequence derived from alignment at Contig_166:279699..280223+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGATAGAACCGCAGAGTTTCAAGGGTGTATCAGAGTGCTGCACCA
GCACGATGGTCGGCCAGACCAGCGACCGCAATATGAAGCACCGCAGCCAA
CGGACTTTACGAAAGCTGTGTCTGCTCTGGCACTTAGCCTGGAGGGGACC
GCCAAGCTGATCGAGCAGCTAATGAGGCTGGTGGGCCGGAAGGGCACCAG
CAATGATCCCACTATGGAGATCACGGACGTGAGCAGGCTTTTCAAAGGTG
ACATGGACGCTGTGCAGCAGGAGCTCAGCGCTCTGCAGGCGTTCATTGAC
GGGCGATCGGGCAAGCGAGGGGCCCCTGCGCCCGGCAGTCAGCGCCACAA
GCACTCACTTTATATGCTGGACGCGCTGAAGCAGCTGGCGCAGGAGCAGG
TGGCAGCTTTTCAGGCAGCCTTGAAGCAGCGGAACGCCGTCATGAGGGAA
CTCAACGACAGGCGGAAAGTCTACTCGACGACACGCAGCGTGGGCCTGAG
CGTGCAGATGAACTCCCCGCTTTTC
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protein sequence of jgi.p|Trimin1|138244

>Trimin1|138244|gw1.166.47.1 ID=Trimin1|138244|gw1.166.47.1|Name=jgi.p|Trimin1|138244|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=175bp
MIDRTAEFQGCIRVLHQHDGRPDQRPQYEAPQPTDFTKAVSALALSLEGT
AKLIEQLMRLVGRKGTSNDPTMEITDVSRLFKGDMDAVQQELSALQAFID
GRSGKRGAPAPGSQRHKHSLYMLDALKQLAQEQVAAFQAALKQRNAVMRE
LNDRRKVYSTTRSVGLSVQMNSPLF
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mRNA from alignment at Contig_166:279699..280223+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13333 ID=mRNA_13333|Name=jgi.p|Trimin1|138244|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=525bp|location=Sequence derived from alignment at Contig_166:279699..280223+ (Tribonema minus UTEX_B_3156 )
ATGATCGATAGAACCGCAGAGTTTCAAGGGTGTATCAGAGTGCTGCACCA
GCACGATGGTCGGCCAGACCAGCGACCGCAATATGAAGCACCGCAGCCAA
CGGACTTTACGAAAGCTGTGTCTGCTCTGGCACTTAGCCTGGAGGGGACC
GCCAAGCTGATCGAGCAGCTAATGAGGCTGGTGGGCCGGAAGGGCACCAG
CAATGATCCCACTATGGAGATCACGGACGTGAGCAGGCTTTTCAAAGGTG
ACATGGACGCTGTGCAGCAGGAGCTCAGCGCTCTGCAGGCGTTCATTGAC
GGGCGATCGGGCAAGCGAGGGGCCCCTGCGCCCGGCAGTCAGCGCCACAA
GCACTCACTTTATATGCTGGACGCGCTGAAGCAGCTGGCGCAGGAGCAGG
TGGCAGCTTTTCAGGCAGCCTTGAAGCAGCGGAACGCCGTCATGAGGGAA
CTCAACGACAGGCGGAAAGTCTACTCGACGACACGCAGCGTGGGCCTGAG
CGTGCAGATGAACTCCCCGCTTTTC
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Coding sequence (CDS) from alignment at Contig_166:279699..280223+

>mRNA_13333 ID=mRNA_13333|Name=jgi.p|Trimin1|138244|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=525bp|location=Sequence derived from alignment at Contig_166:279699..280223+ (Tribonema minus UTEX_B_3156 )
ATGATCGATAGAACCGCAGAGTTTCAAGGGTGTATCAGAGTGCTGCACCA
GCACGATGGTCGGCCAGACCAGCGACCGCAATATGAAGCACCGCAGCCAA
CGGACTTTACGAAAGCTGTGTCTGCTCTGGCACTTAGCCTGGAGGGGACC
GCCAAGCTGATCGAGCAGCTAATGAGGCTGGTGGGCCGGAAGGGCACCAG
CAATGATCCCACTATGGAGATCACGGACGTGAGCAGGCTTTTCAAAGGTG
ACATGGACGCTGTGCAGCAGGAGCTCAGCGCTCTGCAGGCGTTCATTGAC
GGGCGATCGGGCAAGCGAGGGGCCCCTGCGCCCGGCAGTCAGCGCCACAA
GCACTCACTTTATATGCTGGACGCGCTGAAGCAGCTGGCGCAGGAGCAGG
TGGCAGCTTTTCAGGCAGCCTTGAAGCAGCGGAACGCCGTCATGAGGGAA
CTCAACGACAGGCGGAAAGTCTACTCGACGACACGCAGCGTGGGCCTGAG
CGTGCAGATGAACTCCCCGCTTTTC
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