mRNA_13335 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|136857
Unique NamemRNA_13335
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|136857 vs. uniprot
Match: A0A835ZDA8_9STRA (NAD(P)-bd_dom domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDA8_9STRA)

HSP 1 Score: 609 bits (1571), Expect = 3.990e-220
Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 1
Query:    1 VAMSSSEPEFIDASFVDAVPIEKKVVLIEEDTAPSDVSPVQMSDERPIVTEPAPFTGKVFVAGATGFVGSKVCQELIKQGAKVVGLSRSGKRKPTEAEWWEDDVEAWIAASALDVDSYKSALEGCDSVVSCIGGFGATDSYLNLVNGDCTIKLCEAAKEAGVPRFVFVSVHEYKLPTAVARTGYFAGKRRAEARIGELYGADGYVLRPAFIYGQKKVTFTNPFSYEKKTVTLPLEKIGEPAAKITAMNPIKRLANSGLPLADTVYTQPLSVDEVAFAASRCAAGTATAGVTVRLPSETGANVLTVDDIKRMK 936
            VAMSSSEPEFIDASFVDAVPIEKKVVLIEEDTAPSDVSPVQMSDERPIVTEPAPFTGKVFVAGATGFVGSKVCQELIKQGAKVVGLSRSGKRKPTEAEWWEDDVEAWIAASALDVDSYKSALEGCDSVVSCIGGFGATDSYLNLVNGDCTIKLCEAAKEAGVPRFVFVSVHEYKLPTAVARTGYFAGKRRAEARIGELYGADGYVLRPAFIYGQKKVTFTNPFSYEKKTVTLPLEKIGEPAAKITAMNPIKRLANSGLPLADTVYTQPLSVDEVAFAASRCAAGTATAGVTVRLPSETGANVLTVDDIKRMK
Sbjct:    1 VAMSSSEPEFIDASFVDAVPIEKKVVLIEEDTAPSDVSPVQMSDERPIVTEPAPFTGKVFVAGATGFVGSKVCQELIKQGAKVVGLSRSGKRKPTEAEWWEDDVEAWIAASALDVDSYKSALEGCDSVVSCIGGFGATDSYLNLVNGDCTIKLCEAAKEAGVPRFVFVSVHEYKLPTAVARTGYFAGKRRAEARIGELYGADGYVLRPAFIYGQKKVTFTNPFSYEKKTVTLPLEKIGEPAAKITAMNPIKRLANSGLPLADTVYTQPLSVDEVAFAASRCAAGTATAGVTVRLPSETGANVLTVDDIKRMK 312          
BLAST of jgi.p|Trimin1|136857 vs. uniprot
Match: A0A6H5L1C5_9PHAE (NAD(P)-bd_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1C5_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 1.580e-71
Identity = 131/280 (46.79%), Postives = 177/280 (63.21%), Query Frame = 1
Query:   13 SSEPEFIDASFVDAVPIEKKVVLIEEDTAPSDVSPVQMSDERPIVTEPAPFTGKVFVAGATGFVGSKVCQELIKQGAKVVGLSRSGKRKPTEAEWWEDDVEAWIAASALDVDSYKSALEGCDSVVSCIGGFGATDSYLNLVNGDCTIKLCEAAKEAGVPRFVFVSVHEYKLPTAVARTGYFAGKRRAEARIGELYGADGYVLRPAFIYGQKKVTFTNPFSYEKKTVTLPLEKIGEPAAKITAMNPIKRLAN---SGLPLADTVYTQPLSVDEVAFAASRC 843
            SS P+  + S    VP+ ++     + +   D++P     E+       P    VFVAG +GFVGS++C +L+  G  V+ LSR G   P     W   V+ W+  +AL+ D Y++ L   D+VVSC+GGFG TD+Y+ LVNG+  IKL EAA +AGV +FVFVSVH+YK P+ V + GYF GKRRAE  IGEL+GA G +L+PAFIYG + V  T P   E+ TV +PL+++G P AKIT+    KR+A+   SGLPLAD  +TQPLS  EVA +A RC
Sbjct:   58 SSSPDAEEES----VPVAQEPAPQPQASGGGDLTPPPGISEQEEAELVGPSKSTVFVAGGSGFVGSEICTQLVAAGCNVIALSRKGA--PANGGSWVKSVK-WVEGNALNQDLYRAELRRSDTVVSCVGGFGKTDAYMGLVNGETNIKLAEAAADAGVKQFVFVSVHDYKAPSVVKKVGYFDGKRRAEKLIGELFGAKGVILKPAFIYGSRDVKLTGPKGKER-TVNIPLQRVGGPLAKITSTGIGKRIASESRSGLPLADVAWTQPLSTAEVAKSAVRC 329          
BLAST of jgi.p|Trimin1|136857 vs. uniprot
Match: D7FJU6_ECTSI (NAD(P)-bd_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU6_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 3.390e-65
Identity = 113/213 (53.05%), Postives = 145/213 (68.08%), Query Frame = 1
Query:  205 GSKVCQELIKQGAKVVGLSRSGKRKPTEAEWWEDDVEAWIAASALDVDSYKSALEGCDSVVSCIGGFGATDSYLNLVNGDCTIKLCEAAKEAGVPRFVFVSVHEYKLPTAVARTGYFAGKRRAEARIGELYGADGYVLRPAFIYGQKKVTFTNPFSYEKKTVTLPLEKIGEPAAKITAMNPIKRLANSGLPLADTVYTQPLSVDEVAFAASRC 843
            G  V  +L+  G  V+ LSR G   P     W   V+ W+  +AL+ D Y++ L   D+VVSC+GGFG TD+Y+ LVNG+  IKL EAA +AGV +FVFVSVH+YK P+AV + GYF GKRRAE  IGEL+GA G +L+PAFIYG + V  T P   E+ TV +PL+++G P AKIT+    KR+A SGLPLAD  +TQPLS  EVA +A RC
Sbjct:   64 GDAVNTKLVAAGCNVIALSRKGA--PANGGSWVKSVK-WVEGNALNQDLYRAELRRSDTVVSCVGGFGKTDAYMGLVNGETNIKLAEAAADAGVKQFVFVSVHDYKAPSAVKKVGYFDGKRRAEKLIGELFGAKGVILKPAFIYGSRDVKLTGPKGKER-TVNIPLQRVGGPLAKITSTGIGKRIAGSGLPLADVAWTQPLSTAEVAKSAVRC 272          
BLAST of jgi.p|Trimin1|136857 vs. uniprot
Match: A0A176WHX4_MARPO (NAD(P)-bd_dom domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WHX4_MARPO)

HSP 1 Score: 168 bits (426), Expect = 1.810e-46
Identity = 91/221 (41.18%), Postives = 135/221 (61.09%), Query Frame = 1
Query:  172 KVFVAGATGFVGSKVCQELIKQGAKVVGLSRSGKRKPTEAEWWEDDVEAWIAASALDVDSYKSALEGCDSVVSCIGGFGATDSYLNLVNGDCTIKLCEAAKEAGVPRFVFVSVHEYKLPTAVARTGYFAGKRRAEARIGELYGADGYVLRPAFIYGQKKVTFTNPFSYEKKTVTLPLEKIGEPAAKITAMNPIKRLANSGLPLADTVYTQPLSVDEVAFAA 834
            K+ V G +GFVGS++C++ +K+  +V+ LSRSG+  P+ +E W D V  W++      D + S L GC +V+S +GGFG T+  +  +NGD  I   +AA +AGVP+F++VSVH+Y LP     +GYF GKRRAEA I   Y + G +LRP FIYG+++V            V +PL+ +G+P  KI A         + LP +D ++  P+SV +VA AA
Sbjct:   88 KILVLGGSGFVGSEICKQAVKRHIEVISLSRSGR--PSYSESWVDKV-VWVSGDVFMTD-WDSVLNGCSAVISTLGGFG-TNEQMEKLNGDANIIAVDAASKAGVPKFIYVSVHDYNLPEFALDSGYFKGKRRAEAEILNKYPSSGTILRPGFIYGKRRVN----------GVDIPLDFVGQPLEKILAATETFTRPFAKLPASDLLFAPPVSVKDVALAA 293          
BLAST of jgi.p|Trimin1|136857 vs. uniprot
Match: A0A7S0MZM9_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MZM9_9CHLO)

HSP 1 Score: 167 bits (422), Expect = 7.850e-46
Identity = 104/263 (39.54%), Postives = 154/263 (58.56%), Query Frame = 1
Query:  103 SDVSPVQMSDE-RPIVTEPAPFTGKVFVAGATGFVGSKVCQELIKQGAKVVGLSRSGKRKPTEAEWWEDDVEAWIAASALDVDSYKSALEGCDSVVSCIGGFGATDSYLNLVNGDCTIKLCEAAKEAGVPRFVFVSVHEYKLPTAVA-RTGYFAGKRRAEARIGELYGADGYVLRPAFIYGQKKVTFTNPFSYEKKTVTLPLEKIGEPAAKITAM---NPIKRLANS--GLPLADTVYTQPLSVDEVAFAASRCAAGTATAGV 870
            S+ +P+++ +  +P+ + P P   K+ V G  GFVGS+VC+E ++QG  VV ++RSG   P+  E W D V+ W+ A   D  S+   L G  +V+SCIGGF  T + +  + GD TI    AA  AGVPRFVFVSVH+Y +P  +  ++GYF+GK+RAE  +   +   G VLRP FIYG + V         +  VT+PL  +GEP  KI ++   +P+  LA +   LP +D +   P+SV+ VA  A +C +  +  GV
Sbjct:   66 SESTPIEVVESVQPVESAPMP-PAKIVVLGGNGFVGSEVCKEALQQGMTVVSINRSGP--PSINEPWVDRVD-WVNADVFDESSWSYTLPGAAAVISCIGGFATTAADMERICGDATIAGVGAAVAAGVPRFVFVSVHDYNIPDFLKDQSGYFSGKKRAEDAVLLQFPEGGAVLRPGFIYGSRLVP--------QLGVTVPLNLVGEPVQKILSLADQSPLGALAEALKPLPASDVLLAPPVSVESVAATALKCISDPSMVGV 316          
BLAST of jgi.p|Trimin1|136857 vs. uniprot
Match: I1L506_SOYBN (NAD(P)-bd_dom domain-containing protein n=7 Tax=NPAAA clade TaxID=2231382 RepID=I1L506_SOYBN)

HSP 1 Score: 160 bits (404), Expect = 2.070e-43
Identity = 90/222 (40.54%), Postives = 134/222 (60.36%), Query Frame = 1
Query:  172 KVFVAGATGFVGSKVCQELIKQGAKVVGLSRSGKRKPTEAEWWEDDVEAWIAASALDVDSYKSALEGCDSVVSCIGGFGATDSYLNLVNGDCTIKLCEAAKEAGVPRFVFVSVHEYKLPTAVARTGYFAGKRRAEARIGELYGADGYVLRPAFIYGQKKVTFTNPFSYEKKTVTLPLEKIGEPAAKITAMNPIKRLAN--SGLPLADTVYTQPLSVDEVAFA 831
            ++ V G  GFVGS +C+  + +G +V+ LSRSG+  PT ++ W D V  WI+     V+ +   L G  +VVS +GGFG+ +  +  +NG+  +    AAKE G+P+F+ +SVH+Y LP+ +  +GYF GKR+AE+ +   Y   G VLRPAFIYG+++V       YE     LPL+ +GEPA KI  +  I+      S LP +D +   P+SVD+VA A
Sbjct:   71 RIVVLGGNGFVGSAICKAAVSRGIEVISLSRSGR--PTYSDAWVDQV-TWISGDVFYVN-WDEVLVGATAVVSTLGGFGS-EEQMKRINGEANVVAVNAAKEYGIPKFILISVHDYNLPSFLLSSGYFTGKRKAESEVLSKYPNSGIVLRPAFIYGKRRVN-----GYE-----LPLDLVGEPAEKI--LRAIENFTKPLSSLPASDLLLAPPVSVDDVALA 275          
BLAST of jgi.p|Trimin1|136857 vs. uniprot
Match: A0A834ST22_9FABA (NADH dehydrogenase n=2 Tax=Caesalpinioideae TaxID=3804 RepID=A0A834ST22_9FABA)

HSP 1 Score: 159 bits (403), Expect = 2.500e-43
Identity = 98/257 (38.13%), Postives = 145/257 (56.42%), Query Frame = 1
Query:  172 KVFVAGATGFVGSKVCQELIKQGAKVVGLSRSGKRKPTEAEWWEDDVEAWIAASALDVDSYKSALEGCDSVVSCIGGFGATDSYLNLVNGDCTIKLCEAAKEAGVPRFVFVSVHEYKLPTAVARTGYFAGKRRAEARIGELYGADGYVLRPAFIYGQKKVTFTNPFSYEKKTVTLPLEKIGEPAAKITAMNPIKRLAN-----SGLPLADTVYTQPLSVDEVAFAASRCAAGTATAGVTVRLPSETGANVLTVDDIK 927
            +V V G +GFVGS +C+  I +G +V+ LSRSG+  PT  + W D V  WI+     V+ +   L G  +VVS +GGFG+ +  +  +NG+  +    AAKE G+P+F+ +SVH+Y LP  +  +GYF GKR+AE+ +   Y   G VLRPAFIYG+++V       +E     LPL+ +GEPA +I     +K + N     S LP +D +   P+SVD+VAFA            V   +  +    +LT+D IK
Sbjct:   65 RVVVLGGSGFVGSAICKAAISKGIEVISLSRSGR--PTYTDPWVDQV-TWISGDVFYVN-WDEVLVGATAVVSTLGGFGS-EEQMKRINGEANVVAVNAAKEYGIPKFILISVHDYNLPPFLLSSGYFTGKRKAESEVLSKYPNSGVVLRPAFIYGKRRVD-----GFE-----LPLDLVGEPAERI-----LKAVENFTKPLSSLPASDLLLAPPVSVDDVAFA------------VVNAITDDDEFGILTIDQIK 289          
BLAST of jgi.p|Trimin1|136857 vs. uniprot
Match: A0A1Y1IPQ3_KLENI (NAD(P)-binding Rossmann-fold superfamily protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IPQ3_KLENI)

HSP 1 Score: 160 bits (406), Expect = 4.020e-43
Identity = 97/235 (41.28%), Postives = 137/235 (58.30%), Query Frame = 1
Query:  172 KVFVAGATGFVGSKVCQELIKQGAKVVGLSRSGKRKPTEAEWWEDDVEAWIAASALDVDSYKSALEGCDSVVSCIGGFGATDSYLNLVNGDCTIKLCEAAKEAGVPRFVFVSVHEYKLPTAVART-GYFAGKRRAEARIGELYGADGYVLRPAFIYGQKKVTFTNPFSYEKKTVTLPLEKIGEPAAKITAMNPIKRL-ANSGLPLADTVYTQPLSVDEVAFAASRCAAGTATAGV 870
            K+ V G  GFVGS V +  I++G +V  ++RSG+  PT AE W  + + WI A     D  +S   G  +V+SC+GGFG T+  +  + GD T++  EAAK AGVPRF+FVSVH+Y LP+ V  + GYF GK++AEARI ELY   G +LRP FIYG ++V   N        V++PL  +G    K  ++ P     A   +P +D +   P+ V++VA AA       +T GV
Sbjct:  121 KLIVLGGNGFVGSHVVRAAIEKGYEVTSINRSGR--PTVAEAWVYNAQ-WITADVFSAD-LESYFAGASAVMSCLGGFG-TNEQMERICGDATVRAAEAAKNAGVPRFIFVSVHDYNLPSGVKDSIGYFVGKKKAEARIAELYPGSGVILRPGFIYGSRRVPQAN-------NVSIPLTPVGAAVEKSLSILPDALTDALCRIPGSDVLIAPPVDVEDVARAAVEAVRDESTPGV 343          
BLAST of jgi.p|Trimin1|136857 vs. uniprot
Match: A0A022RXK8_ERYGU (NAD(P)-bd_dom domain-containing protein n=2 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RXK8_ERYGU)

HSP 1 Score: 159 bits (401), Expect = 6.890e-43
Identity = 90/222 (40.54%), Postives = 135/222 (60.81%), Query Frame = 1
Query:  172 KVFVAGATGFVGSKVCQELIKQGAKVVGLSRSGKRKPTEAEWWEDDVEAWIAASALDVDSYKSALEGCDSVVSCIGGFGATDSYLNLVNGDCTIKLCEAAKEAGVPRFVFVSVHEYKLPTAVARTGYFAGKRRAEARIGELYGADGYVLRPAFIYGQKKVTFTNPFSYEKKTVTLPLEKIGEPAAK-ITAMNPIKRLANSGLPLADTVYTQPLSVDEVAFAA 834
            ++ V G +GFVGS +C+  + +G +V+ LSRSG+  P+ +E W D V  W+        ++   L G  +VVS IGGFG+ +  +  +NG+  +    +AKE G+P+F+ +SVH+Y LP+ +  TGYF GKR+AEA +   Y   G VLRP FIYG++K+       YE     +PLE IGEP  K ++A+    +  N+ LP +D V   PLSV+++AFAA
Sbjct:   78 QIVVLGGSGFVGSAICKAAVSKGIEVISLSRSGR--PSYSEPWVDQVN-WVTGDVF-YANWDEVLVGATAVVSTIGGFGS-EEQMQRINGEANVVAIHSAKEYGIPKFILISVHDYNLPSFMLSTGYFTGKRKAEAELLSKYPNSGVVLRPGFIYGKRKID-----GYE-----IPLELIGEPLEKFLSAVQNFTKPLNT-LPASDLVLAPPLSVNDLAFAA 283          
BLAST of jgi.p|Trimin1|136857 vs. uniprot
Match: A0A1D1ZIT8_9ARAE (Uncharacterized protein At1g32220, chloroplastic (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZIT8_9ARAE)

HSP 1 Score: 159 bits (403), Expect = 9.450e-43
Identity = 94/224 (41.96%), Postives = 134/224 (59.82%), Query Frame = 1
Query:  166 TGKVFVAGATGFVGSKVCQELIKQGAKVVGLSRSGKRKPTEAEWWEDDVEAWIAASALDVDSYKSALEGCDSVVSCIGGFGATDSYLNLVNGDCTIKLCEAAKEAGVPRFVFVSVHEYKLPTAVARTGYFAGKRRAEARIGELYGADGYVLRPAFIYGQKKVTFTNPFSYEKKTVTLPLEKIGEPAAKI--TAMNPIKRLANSGLPLADTVYTQPLSVDEVAFA 831
            T ++ V G +GFVGS +C+  + +G +VV +SRSG+  P+    W D V  WIA     + S+   L G  +VVS +GGFG+ +  +  +NG+  +   +AAK+ GVP+F+ +SVH+Y LPT +  +GYF GKR+AE+ +   Y   G VLRPAFIYG +KV   N F        +PL  IGEP  +I     N IK L +  LP +D +   P+SVD+VAFA
Sbjct:  117 TERIVVLGGSGFVGSAICKAAVSKGIEVVSVSRSGR--PSYTGSWVDQV-TWIAGDVFYM-SWNEVLLGATAVVSTLGGFGS-EEQMKKINGEANVLAVDAAKDFGVPKFILISVHDYNLPTFLLSSGYFTGKRKAESEVLSKYPNSGVVLRPAFIYGNRKV---NGFE-------IPLNLIGEPLERILNATQNFIKPLGS--LPASDLLLAPPVSVDDVAFA 323          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136857 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZDA8_9STRA3.990e-220100.00NAD(P)-bd_dom domain-containing protein (Fragment)... [more]
A0A6H5L1C5_9PHAE1.580e-7146.79NAD(P)-bd_dom domain-containing protein n=1 Tax=Ec... [more]
D7FJU6_ECTSI3.390e-6553.05NAD(P)-bd_dom domain-containing protein n=1 Tax=Ec... [more]
A0A176WHX4_MARPO1.810e-4641.18NAD(P)-bd_dom domain-containing protein n=2 Tax=Ma... [more]
A0A7S0MZM9_9CHLO7.850e-4639.54Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
I1L506_SOYBN2.070e-4340.54NAD(P)-bd_dom domain-containing protein n=7 Tax=NP... [more]
A0A834ST22_9FABA2.500e-4338.13NADH dehydrogenase n=2 Tax=Caesalpinioideae TaxID=... [more]
A0A1Y1IPQ3_KLENI4.020e-4341.28NAD(P)-binding Rossmann-fold superfamily protein n... [more]
A0A022RXK8_ERYGU6.890e-4340.54NAD(P)-bd_dom domain-containing protein n=2 Tax=Er... [more]
A0A1D1ZIT8_9ARAE9.450e-4341.96Uncharacterized protein At1g32220, chloroplastic (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_166contigContig_166:282495..286565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|136857|gw1.166.38.1
Descriptionubiquinone-6 biosynthetic process
COG categoryGM
Max annot lvl2880.D7FJU6|-
EggNOG OGsCOG0702@1|root,KOG4288@2759|Eukaryota
Evalue5.56e-66
Seed ortholog2880.D7FJU6
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-10_000520.1
TranscriptId137179
TrackFilteredModels1
ProteinId136857
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136857gene_13335Tribonema minus UTEX_B_3156 geneContig_166 282495..286565 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136857Trimin1|136857|gw1.166.38.1Tribonema minus UTEX_B_3156 polypeptideContig_166 282495..286565 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13335_6exon_13335_6Tribonema minus UTEX_B_3156 exonContig_166 282495..282599 -
exon_13335_5exon_13335_5Tribonema minus UTEX_B_3156 exonContig_166 283133..283234 -
exon_13335_4exon_13335_4Tribonema minus UTEX_B_3156 exonContig_166 283841..283921 -
exon_13335_3exon_13335_3Tribonema minus UTEX_B_3156 exonContig_166 284483..284656 -
exon_13335_2exon_13335_2Tribonema minus UTEX_B_3156 exonContig_166 285276..285390 -
exon_13335_1exon_13335_1Tribonema minus UTEX_B_3156 exonContig_166 286207..286565 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13335CDS_13335Tribonema minus UTEX_B_3156 CDSContig_166 286207..286565 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13335 ID=mRNA_13335|Name=jgi.p|Trimin1|136857|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=936bp|location=Sequence derived from alignment at Contig_166:282495..286565- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCGCCATGTCCTCCTCAGAACCGGAGTTTATTGACGCTTCTTTCGTAGA
CGCCGTGCCGATCGAGAAGAAGGTGGTACTCATCGAAGAGGACACTGCGC
CGAGTGATGTGTCCCCTGTACAAATGTCCGATGAGAGACCTATCGTCACC
GAGCCTGCGCCATTCACAGGCAAAGTTTTCGTTGCTGGGGCCACGGGATT
TGTGGGTTCCAAGGTGTGCCAGGAGCTGATCAAGCAGGGCGCGAAGGTGG
TGGGCCTTTCTCGCAGCGGCAAGCGCAAGCCCACCGAAGCCGAATGGTGG
GAGGACGATGTGGAGGCATGGATCGCTGCCAGCGCGCTGGACGTTGACTC
TTACAAAAGCGCTCTGGAGGGGTGTGATAGCGTGGTGAGCTGCATAGGGG
GCTTTGGCGCTACGGACTCATACCTGAATCTGGTCAACGGTGATTGCACC
ATAAAGCTGTGCGAAGCTGCCAAGGAGGCCGGAGTGCCGCGGTTTGTGTT
TGTCAGCGTGCACGAGTACAAGCTGCCCACGGCAGTAGCGCGAACGGGGT
ACTTTGCGGGCAAGCGCAGGGCGGAGGCGCGCATTGGCGAGCTGTATGGC
GCTGATGGCTATGTGCTGCGGCCGGCATTCATCTACGGCCAGAAGAAGGT
GACTTTCACCAACCCGTTCTCTTATGAGAAGAAGACCGTTACACTGCCGC
TGGAGAAGATTGGGGAGCCGGCTGCAAAGATCACCGCCATGAACCCCATC
AAGCGGCTGGCCAACAGCGGCCTGCCATTGGCCGACACCGTATACACTCA
GCCGCTGAGCGTCGATGAGGTGGCATTTGCGGCCTCGAGGTGCGCTGCCG
GCACGGCAACCGCTGGCGTGACCGTGCGTCTGCCCTCAGAGACAGGAGCA
AATGTGCTGACCGTCGATGACATCAAGCGCATGAAG
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protein sequence of jgi.p|Trimin1|136857

>Trimin1|136857|gw1.166.38.1 ID=Trimin1|136857|gw1.166.38.1|Name=jgi.p|Trimin1|136857|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=312bp
VAMSSSEPEFIDASFVDAVPIEKKVVLIEEDTAPSDVSPVQMSDERPIVT
EPAPFTGKVFVAGATGFVGSKVCQELIKQGAKVVGLSRSGKRKPTEAEWW
EDDVEAWIAASALDVDSYKSALEGCDSVVSCIGGFGATDSYLNLVNGDCT
IKLCEAAKEAGVPRFVFVSVHEYKLPTAVARTGYFAGKRRAEARIGELYG
ADGYVLRPAFIYGQKKVTFTNPFSYEKKTVTLPLEKIGEPAAKITAMNPI
KRLANSGLPLADTVYTQPLSVDEVAFAASRCAAGTATAGVTVRLPSETGA
NVLTVDDIKRMK
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mRNA from alignment at Contig_166:282495..286565-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13335 ID=mRNA_13335|Name=jgi.p|Trimin1|136857|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4071bp|location=Sequence derived from alignment at Contig_166:282495..286565- (Tribonema minus UTEX_B_3156 )
GTCGCCATGTCCTCCTCAGAACCGGAGTTTATTGACGCTTCTTTCGTAGA CGCCGTGCCGATCGAGAAGAAGGTGGTACTCATCGAAGAGGACACTGCGC CGAGTGATGTGTCCCCTGTACAAATGTCCGATGAGAGACCTATCGTCACC GAGCCTGCGCCATTCACAGGCAAAGTTTTCGTTGCTGGGGCCACGGGATT TGTGGGTTCCAAGGTGTGCCAGGAGCTGATCAAGCAGGGCGCGAAGGTGG TGGGCCTTTCTCGCAGCGGCAAGCGCAAGCCCACCGAAGCCGAATGGTGG GAGGACGATGTGGAGGCATGGATCGCTGCCAGCGCGCTGGACGTTGACTC TTACAAAAGGTGAGCTTCAGCTTCGCCTGCACTTTTGCCAAATTGTGCCA ATTTGTGAAGCAGCGCTACCTACCCAACCATGTAGCACTGGATCACAGAG GCTTCACCTGAAGGTTTGAGGCTTCACCCTCGGGAGCTGAAGTGCTGCTT TCGCTATCGCCATCTTCAAGCCATTAATCATGAAAGCTGACGGCAGTTCT TGATGAGCTGCTTCACTGCCGTTGAGTTCAAACGACCGTTAAATCGACAC AGACGACACAGAAATCTGCCGTTGTTGGCAGTGCGCTGAGTCAGCTCTCT GCTATTTACGTCGCCTGCATCTGTTCATGTTGCACAAATACTTGCTGCTC TACACTGGTTCCACAGCACTTGTGTGAGTTATGCATATAGAAGTATACCA CTTTGTGTCAGTGCTCTGTGTAGTTGACGAGACTAGACCCGCAAACACCA CTGTTAGTATCAGGCGCCAGCGGCTGCAGGTACTAAGCAACTGCTCGTTG ACTTTAGCAGCTGACACCATTACTCCATGTGCAATTGTGTTATGCTGGCT CTTATTTTCATTCTTGCTTAGATCTGCCATGCACACCTGCGCCTGGTCGA CTGCATCACTAGTTAACCTTAGCTTAAGCCTCCACAGTGCTGGCTTGTAT ACGCCCGAGTTCGCCAGCTTTCTGCATTCAGCTTTTTCTCTGTTGACTCA AGCTCAATTCTTCCATAACTTCTGCTGAACTTCAACTCAATGCAGAGCCT CAGCCATTGACCTGCCCCATTTGACTCTGACTGCATGCGCTGCTATGCTC TTGCTACGGCGTGCTTATGCAACAGCGCTCTGGAGGGGTGTGATAGCGTG GTGAGCTGCATAGGGGGCTTTGGCGCTACGGACTCATACCTGAATCTGGT CAACGGTGATTGCACCATAAAGCTGTGCGAAGCTGCCAAGGTGAGCACCA AACCGTCGCTTTTCCCTGAAGCATGCGGATTTGCCGAATGTCATTACTCA AACACATGTTCATGGTCGCAGTATTGTGGCATGCGGGTTATGAGTTGCTG GACATGGTACTCTAGCATGTGTCTGCTGAATTGAAGTTGCACCACATGTT GAAGTCGCACCACCATGAAGAGCCTGGTGCAACACAGCGCCAGCAGCTGC CTGCCGCAGTCAGCTTTTGGACGAGAGTGTATCTGCCGCCCACGTCAAAA TCAGTGCAGTGCTGAGCATCTGATGGTCTGATCACAGCAGACTTGTACTC TGCCATGAACAGAACACGAACATTGCAGTGATCCACGCGTAATGTTGCGC CATGTGAACAGAACACGAACATTGCAGTGATCCACACGTCATGTTGCGCC ATGTTCTGTGAACCACACTGTGCTCGGTACGTTAGAGTGTGTCTGTGATT GCTCGTAAAATGTCAGACAATAGCAGGGACGCTCGTCCAGACGTACTTTA CATCAAGGACATGGCCACAACATGTCATTTCTGTGCGCTGTTGCGGAGGC TCGCATTACGTCCGCAGCGACTGACAGCGATGCTCAACGCATGCTTTGCT GCCTGCCAGGAGGCCGGAGTGCCGCGGTTTGTGTTTGTCAGCGTGCACGA GTACAAGCTGCCCACGGCAGTAGCGCGAACGGGGTACTTTGCGGGCAAGC GCAGGGCGGAGGCGCGCATTGGCGAGCTGTATGGCGCTGATGGCTATGTG CTGCGGCCGGCATTCATCTACGGCCAGAAGAAGGTGCGCAAAGTTTCTCT GTTGAAGTACCTTGAAGTACTTTGAAGTACTAGACTTACTGTTTGTAGCA CGTGTCAGCAGTCTCTGGCAAGTCACCGTTGTGCCGGGCAATTGCGAGGC AGTGCTGGTATGTCAGTATGACTGTTCTGTCAGTGCCACACTTCTGGGGC TCTGCTACCTGAGGCCCTGCAAGAGGCAACTTGATAGTGAATGAAACCTG TGAAAGTTGCCCGCTGCACTCTAGGGGACAAAAGCCAGCATGTTTCTCCC GTCAGTTCTCATGTAGTGGGCTCAGTCAGTGTCTGAGTTGGTGCTGGGGT GCTTGAGTCTCGTCCGTGAACTCCAATAGAATGCCATTACTCGTGCGAAC ATCAAGCAAGCACAATGCATGTGGCCATGGTGCACTGGCTGTCACCATTC AAGAAGCATTGGTTTCCATTCTGTATTGTCATGAAGGCCAGCTGCACATC AACTCTGCTATCTCTATTTCCCTTATCTGACCCTCTGTAACCGTCCTCGA GCTGACCTGCAAGTATACGTATGTGGATGATCTGGACGTTACAGGTGACT TTCACCAACCCGTTCTCTTATGAGAAGAAGACCGTTACACTGCCGCTGGA GAAGATTGGGGAGCCGGCTGCAAAGGTGAGCCATTCAGTTTCGCCAACCC TAACCCTAACCGTCACCATCACCCAAGTGAATGTTTTGCATTTGCTCTCA CCCTTAGCGGGGACCCTCATTGGAGCAGCCCTTACCCAGACTCAGAAGTT TCAACACTTGCGCCAAGGTGAGGCCCCCACTTGCTGTCAGCCAGCGGTAA CTGCTGCTGAGAGTAAGATTTTTCTGGCCGTTGTCACCTTGCCCTCTATT GTCTGAATGGCGCGCACTGCTCTCGAAGTGTTCAGTTGGAGGCGCTGTTC AGCCTGTCGAGGTTCTACTGAAGGCATGCCGCAAAAGTGCTGCATGACCA GGTGATAACCCTGCACACTCTAATCACCCAACCTTCACATCTAGATCTCG ATTACTGCATGTGAGCTCTGACATAGATCGCTCCTCAACAATGCAGTTGT CACTTATCATGGAATGACCGTCACAATTGCCACTGGACGGTGAATTTGGC ATGTCATGTTTAGTGTGATCAGCAGCAGTAGACCTGTGTATGCCACAGGT AGGTACCGATGTGACTGCATCTGTTTCTGCTGAACCGCGTCTTGTTGTGC GCTTCTGCCACATTCTGCCACGTTTCGCCAGATCACCGCCATGAACCCCA TCAAGCGGCTGGCCAACAGCGGCCTGCCATTGGCCGACACCGTATACACT CAGCCGCTGAGCGTCGATGAGGTGGCATTTGCGGTGAGTCACTGCCACAT TTCATATACTTCAATTTCATGTGCGACGATGTTGTCCTGCTGAGCTTGTG CTCCTGCCATCACCACAAGCAGCGGTTGAGAGCGACAGTTGGAGAGACGC TGGTGCTGTTCGATCCACACACAGCGCTTCTGCACGTGGATTGCAATTGT CAAACCACTTCGATTTTAAGTCAGAGGTTAGACAAGTAATTTGCTAGCTT ACAAGCAAGAAATGCCGCGGTAGCAGAAGCGCGCAATGTGGACATGCGCA CGAAGGTGTTGTTGCTTATGTGTGGCACAGACAGCATCGATGTCGCTGCA CCCATTGGACATGTTCCGATGCATGCTTGCAGTGGTACACAATGCTGCCA TCTACAAGTCCACATGCCCTTCAACAAGATGCACACTTGCTGACGCAAAT TCAGTGTGTTCTGGCTCCACAAGGCCAGTTCATGAATGCTCATGACCTCC TTATACCCCCTCGTTGTCTTCAATAATGCCCACCTTCTTGTACCCCCGTG CTTGTGATTTTGTCAGGCCTCGAGGTGCGCTGCCGGCACGGCAACCGCTG GCGTGACCGTGCGTCTGCCCTCAGAGACAGGAGCAAATGTGCTGACCGTC GATGACATCAAGCGCATGAAG
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Coding sequence (CDS) from alignment at Contig_166:282495..286565-

>mRNA_13335 ID=mRNA_13335|Name=jgi.p|Trimin1|136857|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=936bp|location=Sequence derived from alignment at Contig_166:282495..286565- (Tribonema minus UTEX_B_3156 )
GTCGCCATGTCCTCCTCAGAACCGGAGTTTATTGACGCTTCTTTCGTAGA
CGCCGTGCCGATCGAGAAGAAGGTGGTACTCATCGAAGAGGACACTGCGC
CGAGTGATGTGTCCCCTGTACAAATGTCCGATGAGAGACCTATCGTCACC
GAGCCTGCGCCATTCACAGGCAAAGTTTTCGTTGCTGGGGCCACGGGATT
TGTGGGTTCCAAGGTGTGCCAGGAGCTGATCAAGCAGGGCGCGAAGGTGG
TGGGCCTTTCTCGCAGCGGCAAGCGCAAGCCCACCGAAGCCGAATGGTGG
GAGGACGATGTGGAGGCATGGATCGCTGCCAGCGCGCTGGACGTTGACTC
TTACAAAAGCGCTCTGGAGGGGTGTGATAGCGTGGTGAGCTGCATAGGGG
GCTTTGGCGCTACGGACTCATACCTGAATCTGGTCAACGGTGATTGCACC
ATAAAGCTGTGCGAAGCTGCCAAGGAGGCCGGAGTGCCGCGGTTTGTGTT
TGTCAGCGTGCACGAGTACAAGCTGCCCACGGCAGTAGCGCGAACGGGGT
ACTTTGCGGGCAAGCGCAGGGCGGAGGCGCGCATTGGCGAGCTGTATGGC
GCTGATGGCTATGTGCTGCGGCCGGCATTCATCTACGGCCAGAAGAAGGT
GACTTTCACCAACCCGTTCTCTTATGAGAAGAAGACCGTTACACTGCCGC
TGGAGAAGATTGGGGAGCCGGCTGCAAAGATCACCGCCATGAACCCCATC
AAGCGGCTGGCCAACAGCGGCCTGCCATTGGCCGACACCGTATACACTCA
GCCGCTGAGCGTCGATGAGGTGGCATTTGCGGCCTCGAGGTGCGCTGCCG
GCACGGCAACCGCTGGCGTGACCGTGCGTCTGCCCTCAGAGACAGGAGCA
AATGTGCTGACCGTCGATGACATCAAGCGCATGAAG
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