mRNA_17043 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353472
Unique NamemRNA_17043
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|353472 vs. uniprot
Match: A0A835Z957_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z957_9STRA)

HSP 1 Score: 570 bits (1468), Expect = 4.480e-204
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 1
Query:    1 MDEFASKTLKRVRSVRTERLHLVSTANLPTPAMEQAAIVTGSKPXXXXXXXXXXXXXXXXXVDEETDLVPGVYEGGLKVWECSVDLIEYMLDRPEVYGPEKMAGKRVIELGCGHGLPGVYALRQGAHVVFTDYNREVLEHATIPNVRANCPEALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYFGDWGGLPEMLADDGEERFDLILTAETLYTATATVQIHRLIETLLAPGGHALVAAKRYYFGCGGSCAHFKQLVAPPMACETACVIDTGVANIREVLLVSWGXXXXXXXXXXXXXXAGLTEAMHEDEEEDVQE 966
            MDEFASKTLKRVRSVRTERLHLVSTANLPTPAMEQAAIVTGSKPXXXXXXXXXXXXXXXXXVDEETDLVPGVYEGGLKVWECSVDLIEYMLDRPEVYGPEKMAGKRVIELGCGHGLPGVYALRQGAHVVFTDYNREVLEHATIPNVRANCPEALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYFGDWGGLPEMLADDGEERFDLILTAETLYTATATVQIHRLIETLLAPGGHALVAAKRYYFGCGGSCAHFKQLVAPPMACETACVIDTGVANIREVLLVSWGXXXXXXXXXXXXXXAGLTEAMHEDEEEDVQE
Sbjct:    1 MDEFASKTLKRVRSVRTERLHLVSTANLPTPAMEQAAIVTGSKPXXXXXXXXXXXXXXXXXVDEETDLVPGVYEGGLKVWECSVDLIEYMLDRPEVYGPEKMAGKRVIELGCGHGLPGVYALRQGAHVVFTDYNREVLEHATIPNVRANCPEALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYFGDWGGLPEMLADDGEERFDLILTAETLYTATATVQIHRLIETLLAPGGHALVAAKRYYFGCGGSCAHFKQLVAPPMACETACVIDTGVANIREVLLVSWGXXXXXXXXXXXXXXAGLTEAMHEDEEEDVQE 322          
BLAST of jgi.p|Trimin1|353472 vs. uniprot
Match: A0A6H5JBA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA0_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 8.220e-54
Identity = 113/255 (44.31%), Postives = 140/255 (54.90%), Query Frame = 1
Query:  184 VDEETDLVPGVYEGGLKVWECSVDLIEYMLDRPEVY--------GPEKMAG------KRVIELGCGHGLPGVYALRQGAHVVFTDYNREVLEHATIPNVRANCPEALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYFGDWGGLPEMLAD-DGEERFDLILTAETLYTATATVQIHRLIETLLAPGGHALVAAKRYYFGCGGSCAHFKQLVAPP-----------MACETACVIDTGVANIREVLLVSW 870
            V EE+DLVPG+YEGGLKVWE S+DL+E++L              G +   G      K V+ELGCGHG PG+ AL+QG  V F+D+NREV+E  TIPNVR N  EA    L                            A +Y GDW  L  +L + DG   FDLILTAETLYT     ++  ++   LAPGG ALVA+KR+YFG GGS  +F++ +A             + C  A VIDTG  NIREVL VSW
Sbjct:   95 VPEESDLVPGLYEGGLKVWEASLDLVEHLLSNSSSSPMGLDGGSGEDGSVGSGTGRPKSVLELGCGHGFPGIVALQQGVRVCFSDFNREVIEQVTIPNVRLNV-EAHHWPL----------------------------AEYYSGDWSSLSPLLEERDGGGLFDLILTAETLYTTAVADKVLDMVGRHLAPGGQALVASKRFYFGTGGSTQYFREAIAARCNSAAVEASRRLVCSDAAVIDTGKGNIREVLRVSW 320          
BLAST of jgi.p|Trimin1|353472 vs. uniprot
Match: D8LRL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRL4_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 2.480e-53
Identity = 112/255 (43.92%), Postives = 140/255 (54.90%), Query Frame = 1
Query:  184 VDEETDLVPGVYEGGLKVWECSVDLIEYMLDRPEVY--------GPEKMAG------KRVIELGCGHGLPGVYALRQGAHVVFTDYNREVLEHATIPNVRANCPEALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYFGDWGGLPEMLAD-DGEERFDLILTAETLYTATATVQIHRLIETLLAPGGHALVAAKRYYFGCGGSCAHFKQLVAPP-----------MACETACVIDTGVANIREVLLVSW 870
            V EE+DLVPG+YEGGLKVWE S+DL+E++L              G +   G      K V+ELGCGHG PG+ AL+QG  V F+D+NREV+E  TIPNVR N  EA    L                            A +Y GDW  L  +L + DG   FDLILTAETLYT     ++  ++   LAPGG ALVA+KR+YFG GGS  +F++++A             + C    VIDTG  NIREVL VSW
Sbjct:  125 VPEESDLVPGLYEGGLKVWEASLDLVEHLLSNSSSCPVGLDGGSGGDASVGSGTGRPKSVLELGCGHGFPGIVALQQGVRVCFSDFNREVIEQVTIPNVRLNV-EAHHWPL----------------------------AEYYSGDWSSLSPLLEERDGGGLFDLILTAETLYTTAVADKVLDMVARHLAPGGQALVASKRFYFGTGGSTQYFREVIAARRCSAAAEASRRLVCSDVAVIDTGKGNIREVLRVSW 350          
BLAST of jgi.p|Trimin1|353472 vs. uniprot
Match: A0A6G0X3U9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3U9_9STRA)

HSP 1 Score: 173 bits (439), Expect = 9.470e-49
Identity = 104/229 (45.41%), Postives = 130/229 (56.77%), Query Frame = 1
Query:  196 TDLVPGVYEGGLKVWECSVDLIEYMLDRPEVYGPEKMAGKRVIELGCGHGLPGVYALRQGAH-VVFTDYNREVLEHATIPNVRANCPEALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYFGDWGGLPEMLADDGEERFDLILTAETLYTATATVQIHRLIETLLAP-GGHALVAAKRYYFGCGGSCAHFKQLVAPP--MACETACVIDTGVANIREVLLVSW 870
            +D+  GVYEGG K+WE +VDLI++M+          + G RV+ELGCGHGLPG+YAL QGA  VVF+DYN EV+E ATIPNV  N P A P                               A F  GDWG + ++L   G   FDLILTAETLYT + TV +   I+  L   GG ALVAAK YYFG GGS  HFKQL+A    M+ +T      G + +RE++ V +
Sbjct:   80 SDIQTGVYEGGFKLWEGAVDLIQFMIANTN---EPPIRGCRVMELGCGHGLPGIYALHQGAREVVFSDYNSEVIELATIPNVLRNAPHAKP------------------------------HATFISGDWGLMADLLPG-GSADFDLILTAETLYTESVTVDLFHTIQRYLKKRGGVALVAAKTYYFGTGGSVHHFKQLIARDGSMSAQTVWESSDGRSTVREIVRVEY 274          
BLAST of jgi.p|Trimin1|353472 vs. uniprot
Match: T0R0A7_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0R0A7_SAPDV)

HSP 1 Score: 173 bits (438), Expect = 1.130e-48
Identity = 101/227 (44.49%), Postives = 130/227 (57.27%), Query Frame = 1
Query:  199 DLVPGVYEGGLKVWECSVDLIEYMLDRPEVYGPEKMAGKRVIELGCGHGLPGVYALRQGA-HVVFTDYNREVLEHATIPNVRANCPEALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYFGDWGGLPEMLADDGEERFDLILTAETLYTATATVQIHRLIETLLAPGGHALVAAKRYYFGCGGSCAHFKQLVAPP--MACETACVIDTGVANIREVLLVSW 870
            DL  GVYEGG K+WECS+DLIEY L + +   P    G RV+ELGCGHGLPG++AL+QGA HV+F+DYN EV+E ATIPN      + L                                A+FY GDW  + E +A + +  +DL+LTAETLYT   T+ +  +I+  L   G ALVAAK YYFG GGS  HFK LVA    M   T    +   +NIRE++ V++
Sbjct:   77 DLETGVYEGGFKLWECSIDLIEY-LQQHQADFPIGACGLRVMELGCGHGLPGIFALQQGASHVLFSDYNSEVIELATIPNTMRCAGDRLH------------------------------HASFYSGDWANVSEAMAANEDASYDLVLTAETLYTEDVTISLLAMIKRHLKRSGVALVAAKTYYFGTGGSVHHFKDLVAREGDMVATTVWNGNDCRSNIREIVQVTY 272          
BLAST of jgi.p|Trimin1|353472 vs. uniprot
Match: A0A1V9YGQ4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGQ4_9STRA)

HSP 1 Score: 172 bits (435), Expect = 3.340e-48
Identity = 107/235 (45.53%), Postives = 135/235 (57.45%), Query Frame = 1
Query:  196 TDLVPGVYEGGLKVWECSVDLIEYMLDRPEVYGPEKMAGKRVIELGCGHGLPGVYALRQGA-HVVFTDYNREVLEHATIPNVRANCPEALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAG-GRAAFYFGDWGGLPE-MLADDGEERFDLILTAETLYTATATVQIHRLIETLLAPGGHALVAAKRYYFGCGGSCAHFKQLVAPPMACETACVIDTGV-------ANIREVLLVSW 870
            +DL  GVYEGG K+WECSVDLIEY+    E +G    +  RV+ELGCGHGLPG+YAL+QGA HV+F+DYN EV++ ATIPN                               AQ V +A   RA FY GDWG +   M A + +  +DLILTAETLYT   T+ +   I+  L P G ALVAAK YYFG GGS  H K L+A      T  ++ T V       +NIRE++ V++
Sbjct:   77 SDLETGVYEGGFKLWECSVDLIEYLEAHKEAFGIGTRS-LRVMELGCGHGLPGIYALQQGAAHVLFSDYNSEVIDLATIPN-------------------------------AQRVASAHLNRATFYSGDWGHMSAAMTAANEDTEYDLILTAETLYTEEVTIALLETIKRHLKPSGVALVAAKTYYFGTGGSVHHLKSLIA-----ATGTMVATTVWNGNDCRSNIREIVQVTY 274          
BLAST of jgi.p|Trimin1|353472 vs. uniprot
Match: A0A024UPA8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UPA8_9STRA)

HSP 1 Score: 167 bits (423), Expect = 2.610e-46
Identity = 103/230 (44.78%), Postives = 135/230 (58.70%), Query Frame = 1
Query:  196 TDLVPGVYEGGLKVWECSVDLIEYMLDRPEVYGPEKMAGKRVIELGCGHGLPGVYALRQGA-HVVFTDYNREVLEHATIPNVRANCPEALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYFGDWGGLPE-MLADDGEERFDLILTAETLYTATATVQIHRLIET-LLAPGGHALVAAKRYYFGCGGSCAHFKQLVAPP--MACETACVIDTGVANIREVLLVSW 870
            +D+  GVYEGG K+WEC+VDLI+Y+             G RV+ELGCGHGLPG++AL+QGA HV F+DYN EV+E ATIPN++ N   A  + L+                          +A FY GDW  + E MLA   +  FDLILTAET+YT + +V++ + I+  L   GG ALVAAK YYFG GGS  HFK LVA    M   T    +   +N+RE++ VS+
Sbjct:   85 SDIQTGVYEGGFKLWECAVDLIQYLAANAPNLPVHN--GWRVLELGCGHGLPGLHALQQGAAHVTFSDYNHEVIELATIPNLQRN---ANANDLT--------------------------KATFYSGDWQLMSEDMLAHGTDMEFDLILTAETIYTESVSVELFQTIQRHLKRRGGIALVAAKSYYFGTGGSVHHFKSLVAQDGTMVARTVWESNDAKSNVREIVHVSY 283          
BLAST of jgi.p|Trimin1|353472 vs. uniprot
Match: L8HD02_ACACA (Methyltransferase domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HD02_ACACA)

HSP 1 Score: 162 bits (409), Expect = 1.810e-44
Identity = 93/228 (40.79%), Postives = 125/228 (54.82%), Query Frame = 1
Query:  196 TDLVPGVYEGGLKVWECSVDLIEYMLDRPEVYGPEKMAGKRVIELGCGHGLPGVYALRQGAHVVFTDYNREVLEHATIPNVRANCPEALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYFGDWGGLPEMLADDGEERFDLILTAETLYTATATVQIHRLIETLLAPG-GHALVAAKRYYFGCGGSCAHFKQLVAPPMACETAC--VIDTGVANIREVLLVSW 870
            +DL PGVYEGG K+WE + DL+ ++ +  +V+G    AGK+V+ELGCGHG+PG+Y  +QGA V   DYN EVLE  TIPN R N  E    ++                           R  FY GDWG L E+L       +D+ILTAET+Y   +  ++  LI+  L P  G   VAAK YYF  GG C  F+++V      ET    VI  G +N+RE++ VS+
Sbjct:   63 SDLAPGVYEGGFKLWEGAADLVAHLQETEKVHGVS-YAGKKVLELGCGHGVPGIYLWKQGAEVHLQDYNSEVLELLTIPNARLNAAEENKETME--------------------------RVEFYSGDWGLLTELLP---RHAYDVILTAETIYNVQSLPRLFALIKHCLKPPHGVCYVAAKNYYFSVGGGCRQFEEMVKKDGLFETTVEKVIKDGSSNVREIIKVSF 260          
BLAST of jgi.p|Trimin1|353472 vs. uniprot
Match: UPI000719D9A5 (histidine protein methyltransferase 1 homolog n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719D9A5)

HSP 1 Score: 163 bits (413), Expect = 1.980e-44
Identity = 97/236 (41.10%), Postives = 126/236 (53.39%), Query Frame = 1
Query:  184 VDEETDLVPGVYEGGLKVWECSVDLIEYMLDRPEVYGPEKMAGKRVIELGCGHGLPGVYALRQGAHVVFTDYNREVLEHATIPNVRANCPE-------ALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYFGDWGGLPEMLADDGEERFDLILTAETLYTATATVQIHRLIETLLAPGGHALVAAKRYYFGCGGSCAHFKQLVAPPMACETACVIDTGVANIREVLLVSW 870
            V +++D++P VYEGGLK+WECS+DL+EY+      +     AG  V+ELGCG  LPG++AL QGA VVF DYN EVLE  TIPNV  N P+       ALP                             GR  F+ GDWG L E    + + RFD+ILT+ET+Y+  A   ++ LI+ +L P G A VAAK +YFG GG    F  LV    A        T     RE+L++ W
Sbjct:  113 VTQDSDIIPLVYEGGLKIWECSLDLVEYLASSDVDF-----AGANVLELGCGAALPGIHALGQGASVVFQDYNAEVLELVTIPNVVNNTPDDDDDRVAALP-----------------------------GRCQFWAGDWGAL-ERKWKELQLRFDVILTSETIYSEAAQPHLYSLIKAVLKPAGAAYVAAKVHYFGVGGGTRQFVHLVEEDGAFNVTTCFATESGLRREILMMRW 313          
BLAST of jgi.p|Trimin1|353472 vs. uniprot
Match: A0A1S8W1C2_9FUNG (Uncharacterized protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W1C2_9FUNG)

HSP 1 Score: 161 bits (407), Expect = 2.510e-44
Identity = 88/227 (38.77%), Postives = 131/227 (57.71%), Query Frame = 1
Query:  184 VDEETDLVPGVYEGGLKVWECSVDLIEYMLDRPEVYGPEKMAGKRVIELGCGHGLPGVYALRQGAHVVFTDYNREVLEHATIPNVRANCP-EALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYF-GDWGGLPEMLADDGE-ERFDLILTAETLYTATATVQIHRLIETLLAPGGHALVAAKRYYFGCGGSCAHFKQLVAPPMACETACVIDTGVANIREV 855
            +++++DL+ GVYEGGLK WECS+DL+EY+    + YG ++M+  R++ELGCG  LPG+Y LR GAHV F DYN  V+   TIPN+  N   +  P  +S +           G    + V +     + +F GDWG + E++ +     ++D++LT+E++Y A     +  LI+ ++ PGG ALVAAK  YFGC GS   F QL     +C+    +DT   N   V
Sbjct:   31 IEQQSDLITGVYEGGLKTWECSIDLVEYL---EQTYGQQRMSNLRILELGCGSALPGIYCLRLGAHVDFQDYNEPVIHMITIPNILLNTSSQPTPDLISPE-----------GTFETELVYDPATTPSLFFSGDWGNMLELMQNANLLHQYDIVLTSESIYEAKCQKDLFSLIKGVVRPGGIALVAAKSVYFGCSGSLNDFCQLAEASESCK----VDTVAVNATTV 239          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353472 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z957_9STRA4.480e-204100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JBA0_9PHAE8.220e-5444.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRL4_ECTSI2.480e-5343.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6G0X3U9_9STRA9.470e-4945.41Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
T0R0A7_SAPDV1.130e-4844.49Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9YGQ4_9STRA3.340e-4845.53Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A024UPA8_9STRA2.610e-4644.78Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
L8HD02_ACACA1.810e-4440.79Methyltransferase domain containing protein n=1 Ta... [more]
UPI000719D9A51.980e-4441.10histidine protein methyltransferase 1 homolog n=1 ... [more]
A0A1S8W1C2_9FUNG2.510e-4438.77Uncharacterized protein n=1 Tax=Batrachochytrium s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_165contigContig_165:199831..204245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353472|estExt_Genemark1.C_Ctg_1650016
BRITEko00000,ko01000,ko03009
KEGG koko:K14837,ko:K18803
EC2.1.1.85
GOsGO:0000027,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006417,GO:0006450,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008757,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016043,GO:0016740,GO:0016741,GO:0018021,GO:0018064,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0031072,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032259,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0034622,GO:0036211,GO:0042038,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:1901564,GO:2000112
Preferred nameMETTL18
Descriptionmethyltransferase activity
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG3897@1|root,KOG2920@2759|Eukaryota
Evalue4.06e-54
Seed ortholog2880.D8LRL4
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNicotinamide N-methyltransferase-like
Ec32 orthologEc-12_000250.1
TranscriptId353794
TrackFilteredModels1
ProteinId353472
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353472gene_17043Tribonema minus UTEX_B_3156 geneContig_165 199831..204245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353472Trimin1|353472|estExt_Genemark1.C_Ctg_1650016Tribonema minus UTEX_B_3156 polypeptideContig_165 199831..204245 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17043_7exon_17043_7Tribonema minus UTEX_B_3156 exonContig_165 199831..200121 -
exon_17043_6exon_17043_6Tribonema minus UTEX_B_3156 exonContig_165 200655..200959 -
exon_17043_5exon_17043_5Tribonema minus UTEX_B_3156 exonContig_165 201886..201931 -
exon_17043_4exon_17043_4Tribonema minus UTEX_B_3156 exonContig_165 202795..202887 -
exon_17043_3exon_17043_3Tribonema minus UTEX_B_3156 exonContig_165 203289..203347 -
exon_17043_2exon_17043_2Tribonema minus UTEX_B_3156 exonContig_165 203702..203838 -
exon_17043_1exon_17043_1Tribonema minus UTEX_B_3156 exonContig_165 204208..204245 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17043CDS_17043Tribonema minus UTEX_B_3156 CDSContig_165 204208..204245 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17043 ID=mRNA_17043|Name=jgi.p|Trimin1|353472|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=969bp|location=Sequence derived from alignment at Contig_165:199831..204245- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGAATTTGCGTCGAAAACACTGAAGCGGGTCAGGTCTGTGCGCAC
GGAGCGCCTGCACCTCGTCAGCACGGCCAACCTGCCGACGCCGGCGATGG
AGCAGGCGGCCATTGTTACGGGCTCCAAGCCGCCCAAGACCACCATGCTG
CTGCGAGCGGTACCGCCGCCAGAAGCTGCGGTGGTGGACGAGGAGACGGA
CTTGGTGCCTGGGGTGTACGAAGGGGGGCTCAAGGTCTGGGAGTGCAGCG
TGGACTTGATTGAGTACATGCTGGACAGGCCGGAGGTATACGGACCTGAG
AAAATGGCTGGAAAGCGTGTGATAGAGCTGGGATGTGGGCACGGTCTGCC
AGGCGTATATGCCCTGCGACAAGGCGCGCACGTCGTCTTTACCGACTACA
ACCGCGAGGTCCTGGAGCACGCCACCATACCCAACGTGCGCGCCAACTGC
CCCGAGGCGCTCCCCTCGTCGCTCAGCATCGACACCAGCGGGGGGAGGGG
GGGGGGTATGAGTGCCGGGCAAGGCAGCGCGCAGGGGGTGGTGAATGCGG
GGGGGCGCGCGGCGTTCTACTTCGGCGATTGGGGCGGGCTGCCTGAGATG
CTGGCGGACGATGGGGAGGAGCGCTTTGACCTGATACTCACGGCGGAGAC
GCTGTACACGGCGACCGCGACTGTGCAGATCCACCGCCTCATCGAGACGC
TCCTAGCGCCCGGCGGCCACGCGCTCGTCGCCGCCAAGCGCTACTACTTT
GGCTGCGGCGGCAGCTGCGCGCACTTCAAGCAGCTCGTCGCGCCGCCCAT
GGCGTGCGAGACGGCGTGCGTCATCGACACGGGCGTCGCCAACATCCGCG
AGGTGCTGCTGGTGTCGTGGGGGGGGGGAGGGGGGGGCGCTGTAACTGCC
ACCGCAGGGGGGGGCGCGGGCCTGACGGAGGCGATGCACGAGGACGAAGA
GGAGGACGTTCAAGAGTAG
back to top

protein sequence of jgi.p|Trimin1|353472

>Trimin1|353472|estExt_Genemark1.C_Ctg_1650016 ID=Trimin1|353472|estExt_Genemark1.C_Ctg_1650016|Name=jgi.p|Trimin1|353472|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=323bp
MDEFASKTLKRVRSVRTERLHLVSTANLPTPAMEQAAIVTGSKPPKTTML
LRAVPPPEAAVVDEETDLVPGVYEGGLKVWECSVDLIEYMLDRPEVYGPE
KMAGKRVIELGCGHGLPGVYALRQGAHVVFTDYNREVLEHATIPNVRANC
PEALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYFGDWGGLPEM
LADDGEERFDLILTAETLYTATATVQIHRLIETLLAPGGHALVAAKRYYF
GCGGSCAHFKQLVAPPMACETACVIDTGVANIREVLLVSWGGGGGGAVTA
TAGGGAGLTEAMHEDEEEDVQE*
back to top

mRNA from alignment at Contig_165:199831..204245-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17043 ID=mRNA_17043|Name=jgi.p|Trimin1|353472|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4415bp|location=Sequence derived from alignment at Contig_165:199831..204245- (Tribonema minus UTEX_B_3156 )
ATGGACGAATTTGCGTCGAAAACACTGAAGCGGGTCAGGTGAGCGCAGCA GTTACTGCCAGTGACAACTGATGTGTATGTTGTGCATTCTCAAGCTGTAC AAGAGTTGATGTGATTCGTAGACCTCGTGCTTATGCTTGGAAAGGCAGCA TCACAGTCAGGCAAATTGCAGCATTGGTCAGCATAAGTGACACGTCAATG TCCAGCAGCACCGGCATGCGCAGCGCTTGTAACTACTCACTGACAGCAGC GCAACTGCATGCTTCATGGCCAGACTGGGTGCAGGGAGCAGTGCCCACCA ACCGTTGAGTAATTGCTCAACCTGTTGCTTTACTGCATGTTGAACATTGT TCACAGTTGGCACGTCACCACCTCATCACAATCTTCTCCATTCCCCTGCT GCCGCAGGTCTGTGCGCACGGAGCGCCTGCACCTCGTCAGCACGGCCAAC CTGCCGACGCCGGCGATGGAGCAGGCGGCCATTGTTACGGGCTCCAAGCC GCCCAAGACCACCATGCTGCTGCGAGCGGTACCGCCGCCAGAAGGTGAAT GCACTTAGCTTGCCTTGTGTACAGCAGGAGTGGGTATCGTTTGCATCAGC TCTGGATGCACTAAGCTCACGTTGTACGCAGGGGTGGGCATCATTTTGCA TCACCTTTGGACAGAACATGCTGATTGCACTTTTTGCATGGTCCATCACG CTTACCGCGCCATCAGGGGCGCTCGATCGATATCATCAGCCACCATTGTA TGCAGGGAATATACTTATTAATACACAACTTGCCGCTGTCAGACCTGCTC ATTGGGCAAGCGCCACCCCAGCACCTTGCACAGCATGCTTCGTCAATGCT GCGTCAGTGCTGATGCGCAATGGCCGCCCCGTGCCTGTCTCTGTGCAGCT GCGGTGGTGGACGAGGAGACGGACTTGGTGCCTGGGGTGTACGAAGGGGG GCTCAAGGTGAGCACTGCAGTTTAGCAGGCTGCTGCTCACGTGCTCACGT TCGTGGCAGCTGTTGTTTCATGCGTGTCTGTGTACCGACTTACAACGTGC TGAGAAGTGGTGAGGGCAGGTCGCCGGTCACCAGGGGTGGTAACGTCCGA ATGCAGATGTTCTCAGCTGATTTCAATGCGCAAATACGTGTGCCACTCCA TACATCATCGCCCCAACAATCTCACTCAATGACTGTGTCGCTGAAGCTGT TACGCATGGTCATCAGAGTTATGTGACTGCCAGCAGGAACTGGGGCAGAC CTCTCATCTTTTCTCTGCGACATGCGCGCTTGCCTCTGATATTGACCGCG TTTACATAGTCCCTGCACACTGCCAATGCGCTGGTCTGCTTGCCTGGACT CGTTGCAGGTCTGGGAGTGCAGCGTGGACTTGATTGAGTACATGCTGGAC AGGCCGGAGGTATACGGACCTGAGAAAATGGCTGGAAAGCGTGTGATAGA GGTACGTACGTCCTATGGGGATGTCACACATTACTTTGTGAAGTCGATCA GCATGAGTTGATGTCAGGGCCAGCGTCTAAACTCAGACGGCCTTGGCGCA ACTGACTTTGGGTTTTGAGCCCCGGCTAAACTAGTTTAGCCATGGCGCAA CTGGCGCAACTCTCTTAAGGCTTCTAGTGCTTCTACAGTCACTATTAAGG CCCATACAGCTTACATAAGGACTAGGGTTAGGGTTACGGGCATGGCTAAC CCTAGTTAAAACACTAACCCTAGGCAAGACTCGCGAGTAAACTCGCGAGC AAGCTCGCGAGTAATGAGTAATACTCGTGAGTAAACGTGCGAGTATCGCC AGTTGCGCCACGAGTCACTTGCCGGGGCAGCTGGCGCAACTGGCGCAACA CACTGGCGCAACGTGTTTGGCGCAAGAGTTTAGTTTAGACGCTAGCCCTG GTTGATGTATGACAACTTTGCTTTTGCCGCAGTCTATGTAAGCTTGACCC CCATGCAGCATTTATATGCGGAAACCGCTAGGCGCAAGAAACATGGCATG CGCTACACATATGCTGTCATGTTCAGCGTGGTGCTGTTGTGCGCTGTTGG CTCATTACCTGATTCGCCCACTTGTTCGCCTAGGCAGCTGTGATTGATAT CAGGTTAACCGCATTGGCCTTATGTTTGCAGACTAGCAAATTGGTGTAGA ATGGCTCTTTGCTCCTGCTTCTTGCGGGCAGCTGGCGCTTGTGCGGTGTG GTCGCAACTGGTCACATTTTTGCGACTGGATATTTATATTTGAGCTCAGC TTAGAGGAGAATGTCTTGGTTGCACTCATTTGTGCCCTCATCCATGACTG TTCGTGAGTTGCAGCTGGGATGTGGGCACGGTCTGCCAGGCGTATATGCC CTGCGACAAGGTAAGAGCATGCGCAGTTACACATGGAAGGCGTATGCAGA TGATAATTCAGATACCAGCACCCTGGCCTCTGAGAATTGGCACATTTGAC TCATGCACAAACGTCTGTGCATGCGTCTGCTCTTTCAATTGGTGAAACTG CTTCAGCTGTTGTCGAGTGTTGTGTCAAAAGAGCACAACTGGTACATTCT ACTGTACTATCATACTATTATGGTGACTCGTTCTACATACTCCTTCATTC TTCAATGTACCATCGCTTGAAGTTTTTGACGTACAGTCGCAAAAGCCCGG TCACTGGTTGCTTGCCACTTGGAAAAACAATGTTCATCGCGTGCAGCACG TCTGTACACTGAGGCTTCTGTAGCAACAGCAACAGGAGGCTCGCTTGCTC TCTGTACACTCGGACTCCCGTAGGAACAGCAACAGCAGGCTCGCTACCTC GTGCAGCAGCGCTCAGCTCGCTGCGTCGCGCGCCGCCGCCGCGCGTCGTG CAGGCGCGCACGTCGTCTTCACTCCTTCATTCTTCAGTATACCAGCACTT TAAGTTTTCATGTCCGAATGCGAAAGCCCGGTCACTGGTCGCCTGGCGCT CAAAACTCATTGTCAGCACGTGCAGCATGTCTTTGCACTCAGGCTCCCGT AGCAACAGCAAACGGCAGGCTCGCTGGCTGTCTGTACACTCAGGCTCCTG TAGCTTGCTCGTGCAGCAGTGCTCAGCTCACTGCGTGTGCGCCGCCGCAG GCGCGCACGTCGTCGCCACTCCTTCATTCTTCAATATACCAGCACTTGAA GTTGTTGAAATACAAATGCAAACGCCTGGTTCAATGCGACGCCTGGCTAC CCGTTGCTTGGCGCTCGAAACGCATTATCATTGCGTGCAGCAGTGCTCAG CTCGCCGCATGTGCGCGCGCCGCGTCGCCGCCGCAGGCGCGCACGTCGTC TTTACCGACTACAACCGCGAGGTCCTGGAGCACGCCACCATACCCAACGT GCGCGCCAACTGCCCCGAGGCGCTCCCCTCGTCGCTCAGCATCGACACCA GCGGGGGGAGGGGGGGGGGTATGAGTGCCGGGCAAGGCAGCGCGCAGGGG GTGGTGAATGCGGGGGGGCGCGCGGCGTTCTACTTCGGCGATTGGGGCGG GCTGCCTGAGATGCTGGCGGACGATGGGGAGGAGCGCTTTGACCTGATAC TCACGGCGGAGACGCTGTACACGGCGACCGCGACTGTGCAGGTGAGTGCG CTCGGCACGCGTGCACGCGTGCGCGTGGGGTCGGGACAGGAACTGGCAGT TGAGCATGAACTTCAAGTACTTGATGTTATGGTATGTATGTGATGCACCT CTCTGGCCGGAGCGTTGCGCGCTGCACCAGCTTTGTGCTAAGTTTGACTG GAGGGCAACGGACCCTTGTGGAGCCTGGTATACTATCCTCCGCAGCAAGC TCGGTAGGGACCAGATGCTGCAACTATGGTGCTTCTGTGAGTGAAATCCG CTCTTCTCTCAAGCTATGGGTATTGCGATCTTCTTCAGCAGGTGATGACG CTCAGCTCAGCACCTGGGGATCTTCTGTGCCAACTGTCCAAATCATCGTG CATTACGCCACTCCTGTCCGCACTGCTGCAAGGACACCTCATCAACCTCA ACTTCAAGTTGTCCCTCCTCGCCCGCGGCGAGTAGCCCCCAAATCTCAAC ATGGCATCACTTCCCCCACCGCAATGCTCGATTGGCGCTCCGCTGAAAAT CGCCCATAACCCCCCCCCCTGCAGATCCACCGCCTCATCGAGACGCTCCT AGCGCCCGGCGGCCACGCGCTCGTCGCCGCCAAGCGCTACTACTTTGGCT GCGGCGGCAGCTGCGCGCACTTCAAGCAGCTCGTCGCGCCGCCCATGGCG TGCGAGACGGCGTGCGTCATCGACACGGGCGTCGCCAACATCCGCGAGGT GCTGCTGGTGTCGTGGGGGGGGGGAGGGGGGGGCGCTGTAACTGCCACCG CAGGGGGGGGCGCGGGCCTGACGGAGGCGATGCACGAGGACGAAGAGGAG GACGTTCAAGAGTAG
back to top

Coding sequence (CDS) from alignment at Contig_165:199831..204245-

>mRNA_17043 ID=mRNA_17043|Name=jgi.p|Trimin1|353472|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=969bp|location=Sequence derived from alignment at Contig_165:199831..204245- (Tribonema minus UTEX_B_3156 )
ATGGACGAATTTGCGTCGAAAACACTGAAGCGGGTCAGGTCTGTGCGCAC
GGAGCGCCTGCACCTCGTCAGCACGGCCAACCTGCCGACGCCGGCGATGG
AGCAGGCGGCCATTGTTACGGGCTCCAAGCCGCCCAAGACCACCATGCTG
CTGCGAGCGGTACCGCCGCCAGAAGCTGCGGTGGTGGACGAGGAGACGGA
CTTGGTGCCTGGGGTGTACGAAGGGGGGCTCAAGGTCTGGGAGTGCAGCG
TGGACTTGATTGAGTACATGCTGGACAGGCCGGAGGTATACGGACCTGAG
AAAATGGCTGGAAAGCGTGTGATAGAGCTGGGATGTGGGCACGGTCTGCC
AGGCGTATATGCCCTGCGACAAGGCGCGCACGTCGTCTTTACCGACTACA
ACCGCGAGGTCCTGGAGCACGCCACCATACCCAACGTGCGCGCCAACTGC
CCCGAGGCGCTCCCCTCGTCGCTCAGCATCGACACCAGCGGGGGGAGGGG
GGGGGGTATGAGTGCCGGGCAAGGCAGCGCGCAGGGGGTGGTGAATGCGG
GGGGGCGCGCGGCGTTCTACTTCGGCGATTGGGGCGGGCTGCCTGAGATG
CTGGCGGACGATGGGGAGGAGCGCTTTGACCTGATACTCACGGCGGAGAC
GCTGTACACGGCGACCGCGACTGTGCAGATCCACCGCCTCATCGAGACGC
TCCTAGCGCCCGGCGGCCACGCGCTCGTCGCCGCCAAGCGCTACTACTTT
GGCTGCGGCGGCAGCTGCGCGCACTTCAAGCAGCTCGTCGCGCCGCCCAT
GGCGTGCGAGACGGCGTGCGTCATCGACACGGGCGTCGCCAACATCCGCG
AGGTGCTGCTGGTGTCGTGGGGGGGGGGAGGGGGGGGCGCTGTAACTGCC
ACCGCAGGGGGGGGCGCGGGCCTGACGGAGGCGATGCACGAGGACGAAGA
GGAGGACGTTCAAGAGTAG
back to top