Trimin1|353470|estExt_Genemark1.C_Ctg_1650012 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353470
Unique NameTrimin1|353470|estExt_Genemark1.C_Ctg_1650012
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length466
Homology
BLAST of jgi.p|Trimin1|353470 vs. uniprot
Match: A0A836CIV9_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIV9_9STRA)

HSP 1 Score: 946 bits (2444), Expect = 0.000e+0
Identity = 465/465 (100.00%), Postives = 465/465 (100.00%), Query Frame = 0
Query:    1 MSDTAAAADSARISKIMGNRVKALIEKYPWLYSTKSQHTGGPDLQEVSDELEAMLTVMSLVDAPPDMTSLAMQTMLANAKEHGARQRVEMGGAKKATTADRSAKDTVLGDVKQLSRVLDFNEKGEWAFIALTSKTFRSAYMVSTAAAHGLAWGLSACKATPIRDDQMWGTECAPVVEPCGNNWQACSSEQYAFTAFSQTRNQECCPNATHQCVEDPSSKHYGTKCVPIKACAEGRAPCGRRKGAVMETPDDTCCAADEQCYIVDLPNRRYKSSCLKCDMPCGRPALKDATGDDRCCLPRQVCRPAFSGAAGTKRTECVYPFKCRKHTCKHGGKCVNGASPYVGHTGTFRKCKCKPGFKGVFCEIKANNSGFEAPWSGNVSERAAAGAASALESAKELDEKHHLREKAARAIVSFLRTANKIIKPGDREGEKGDASDPSARVGTTAQQRAAASADAKLPVATAVPI 465
            MSDTAAAADSARISKIMGNRVKALIEKYPWLYSTKSQHTGGPDLQEVSDELEAMLTVMSLVDAPPDMTSLAMQTMLANAKEHGARQRVEMGGAKKATTADRSAKDTVLGDVKQLSRVLDFNEKGEWAFIALTSKTFRSAYMVSTAAAHGLAWGLSACKATPIRDDQMWGTECAPVVEPCGNNWQACSSEQYAFTAFSQTRNQECCPNATHQCVEDPSSKHYGTKCVPIKACAEGRAPCGRRKGAVMETPDDTCCAADEQCYIVDLPNRRYKSSCLKCDMPCGRPALKDATGDDRCCLPRQVCRPAFSGAAGTKRTECVYPFKCRKHTCKHGGKCVNGASPYVGHTGTFRKCKCKPGFKGVFCEIKANNSGFEAPWSGNVSERAAAGAASALESAKELDEKHHLREKAARAIVSFLRTANKIIKPGDREGEKGDASDPSARVGTTAQQRAAASADAKLPVATAVPI
Sbjct:    1 MSDTAAAADSARISKIMGNRVKALIEKYPWLYSTKSQHTGGPDLQEVSDELEAMLTVMSLVDAPPDMTSLAMQTMLANAKEHGARQRVEMGGAKKATTADRSAKDTVLGDVKQLSRVLDFNEKGEWAFIALTSKTFRSAYMVSTAAAHGLAWGLSACKATPIRDDQMWGTECAPVVEPCGNNWQACSSEQYAFTAFSQTRNQECCPNATHQCVEDPSSKHYGTKCVPIKACAEGRAPCGRRKGAVMETPDDTCCAADEQCYIVDLPNRRYKSSCLKCDMPCGRPALKDATGDDRCCLPRQVCRPAFSGAAGTKRTECVYPFKCRKHTCKHGGKCVNGASPYVGHTGTFRKCKCKPGFKGVFCEIKANNSGFEAPWSGNVSERAAAGAASALESAKELDEKHHLREKAARAIVSFLRTANKIIKPGDREGEKGDASDPSARVGTTAQQRAAASADAKLPVATAVPI 465          
BLAST of jgi.p|Trimin1|353470 vs. uniprot
Match: A0A836CN39_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN39_9STRA)

HSP 1 Score: 239 bits (611), Expect = 4.600e-74
Identity = 108/179 (60.34%), Postives = 125/179 (69.83%), Query Frame = 0
Query:  193 FTAFSQTRNQECCPNATHQCVEDPSSKHYGTKCVPIKACA-EGRAPCGRRKGAVMETPDDTCCAADEQCYIVDLPNRRYKSSCLKCDMPCGRPALKDATGDDRCCLPRQVCRPAFSGAAGTKRTECVYPFKCRKHTCKHGGKCVNGASPYVGHTGTFRKCKCKPGFKGVFCEIKANNSG 370
             T F Q+  Q CCP     CV D SSK   TKCV  KAC  EG  PCGR +   ++T +DTCC   + CY+VDLP+  YKS C  CD+PCGR  LKD  G+DRCCLP+QVCRPAF+G +    TECVYPFKCRKHTCKHGGKC+N  SPY GHTGTF++CKC  GFKGVFCEI    +G
Sbjct:    1 MTVFGQSVEQVCCP-PDMLCVTDKSSKFAATKCVAKKACPKEGETPCGRGRVDGVDTANDTCCPKGKHCYLVDLPSGDYKSICSTCDVPCGRARLKDRWGNDRCCLPKQVCRPAFNGLSDVTNTECVYPFKCRKHTCKHGGKCINNPSPYSGHTGTFKRCKCTDGFKGVFCEIAKTAAG 178          
BLAST of jgi.p|Trimin1|353470 vs. uniprot
Match: A0A835Z859_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z859_9STRA)

HSP 1 Score: 233 bits (595), Expect = 1.680e-69
Identity = 109/223 (48.88%), Postives = 133/223 (59.64%), Query Frame = 0
Query:  144 TAAAHGLAWGLSACKATPIRDDQMWGTECAPVVEP-CGNNWQACSSEQYAFTAFSQTRNQECCPNATHQCVEDPSSKHYGTKCVPIKACAEGRAPCGRRK--GAVMETPDDTCCAADEQCYIVDLPNRRYKSSCLKCDMPCGRPALKDATGDDRCCLPRQVCRPAFSGAAGTKRTECVYPFKCRKHTCKHGGKCVNGASPYVGHTGTFRKCKCKPGFKGVFCE 363
            T    G+ +G SACKA PI+ D  WGT C P  +  C N    C  E YAFT F  TRNQ CC  ATH CV+DP SKHYG+ CV    CA+G+  CGR K  G++++T D+TCC  + +CY +D     YK+ CL C +PCGR  +     D +CCLPRQ C P+F GAA    T C Y F C K  CK+GGKC     PY G    F +C C PGFKGVFC+
Sbjct:  109 TTCCQGVVFGQSACKALPIQSDNTWGTACFPFNDKNCLNGNLECEKEIYAFTPFGSTRNQVCCKVATHDCVQDPDSKHYGSICVARVQCAKGQDACGRSKKAGSILQTADNTCCPCNTKCYTIDTDGGGYKTKCLDCAVPCGRDYVNKPGIDTQCCLPRQTCIPSFHGAAEPDTTHCAYDFPCSKDLCKNGGKCRVKQFPYAGQ---FDRCDCAPGFKGVFCD 328          
BLAST of jgi.p|Trimin1|353470 vs. uniprot
Match: A0A835ZAJ2_9STRA (EGF-like domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAJ2_9STRA)

HSP 1 Score: 217 bits (553), Expect = 7.210e-64
Identity = 110/224 (49.11%), Postives = 135/224 (60.27%), Query Frame = 0
Query:  149 GLAWGLSACKATPI-RDDQMWGTECAPVVEPCGNNWQACSSEQYAFT-AFSQTRNQECCPNATHQCVEDPSSKHY-GTKCVPIKACAEGRAPCGRRK--GAVMETPDDTCCAADEQCYIVDLPNRRYKSSCLKCDMPCGRPALKDATGDDRCCLPRQV-CRPAFSGAAGTKRTECVYPFKCRKHTCKHGGKCVNGASPYVGHTGTFRKCKCKPGFKGVFCEIKA 366
            G+  G SACKA PI +D  +WGT CAPV + C  +  AC S  YAFT +  QT +  CCP++TH+CV DP+++ Y GTKCV  + CA+GR  CGR K  G ++   DD CC A +QCY+VD PN  + + C  C+ PCGR A  D  GDD         C  AF G A    T C Y FKC   TCK+ G+CV    PY G    F+KC C PGFKGVFCEIKA
Sbjct:   65 GVVNGESACKALPIDKDTGIWGTHCAPVTKDCPFDAPACGSNTYAFTLSGGQTVDNICCPSSTHECVSDPAARAYNGTKCVKKQKCAKGRQACGRSKEAGQILVNSDDKCCPAGQQCYMVDQPNGSFTTKCSSCNTPCGR-AQVDQPGDDXXXXXXXXQCTAAFHGTAAPVTTRCAYAFKCEDDTCKNSGRCVEDEFPYQGQ---FKKCHCAPGFKGVFCEIKA 284          
BLAST of jgi.p|Trimin1|353470 vs. uniprot
Match: A0A835ZAR6_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAR6_9STRA)

HSP 1 Score: 207 bits (528), Expect = 1.830e-58
Identity = 105/217 (48.39%), Postives = 128/217 (58.99%), Query Frame = 0
Query:  155 SACKATPIRD-DQMWGTEC-APVVEPCGNNWQACSSEQYAFTAFSQTRNQECCPNATHQCVEDPSSKHYGTKCVPIKACAEGRAPCGRRKGAVMETPDDTCCAADEQCYIV--DLPNRRYKSSCLKCDMPCGRPALKDATGDDRCCL--PRQVCRPAFSGAAGTKRTECVYPFKCRKHTCKHGGKCVNGASPYVGHTGTFRKCKCKPGFKGVFCEIK 365
            ++C+ATP+R  D  +GT+C AP    CG +  AC SE YAFT F QT ++ CCP    QCV DP S+  GT+C   + C  GRA CGR +G V E+ DD CCA  + CY V     N  Y + C  C                      P+QVCR AF G      TECVYPFKCRK  CKHGGKCV+  SPY+GH+GTF +CKCK G+KG+FCEIK
Sbjct:  217 TSCRATPLRTADGSFGTDCMAP--RACGASQFACKSEIYAFTLFGQTLDERCCPRGA-QCVADPKSRFNGTRCAAPQRCGGGRAACGRGRGGVYESADDRCCAKGKGCYEVRSGKGNGSYTTKCSSCXXXXXXXXXXXXXXXXXXXXXXPKQVCRNAFHGTQPPVTTECVYPFKCRKGLCKHGGKCVDKTSPYIGHSGTFARCKCKKGYKGIFCEIK 430          
BLAST of jgi.p|Trimin1|353470 vs. uniprot
Match: A0A835ZEG4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEG4_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.980e-8
Identity = 57/169 (33.73%), Postives = 73/169 (43.20%), Query Frame = 0
Query:  179 CGNNWQACSSEQYAFTAFSQTRNQECCPNATHQCVEDPSS-KHYGTKCVPIKACAEGRAPCGRR-------KGAVME-TPDDTCCAADEQC-YIVDLPNRRYKS-SCLKCDMPCGRPALKD------------------ATGDDRCCLPRQVCRPAFSGAAGTKRTECV 318
            CG+N Q C    ++      T +  CC  A  QC  DP S   + TKC  + ACA+GR  CGR+        G   E TPD+ CCAADE+C +  D  +R  K+ SC K   PCG  A  D                   T ++ CC   + C    SG     R  CV
Sbjct:  120 CGDNRQPCG---HSRAGNYPTHSTTCCA-ADEQCTVDPDSGAAHTTKCTKL-ACAKGRQACGRKVTMFTNKHGHYFEQTPDNVCCAADEECDFGKDNVSRCKKTISCPKGREPCG--ATTDDLNIFNDPNLYYYLYYAYGTPNNVCCAADEYCDNTTSGGFNGTRMNCV 281          
BLAST of jgi.p|Trimin1|353470 vs. uniprot
Match: A0A835ZQ47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ47_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.010e-6
Identity = 54/176 (30.68%), Postives = 69/176 (39.20%), Query Frame = 0
Query:  171 ECAPVVEPCGNNWQACSSEQYAFTAFSQTRNQECCPNATHQCVEDPSS-KHYGTKCVPIKACAEGRAPCGRR-------KGAVME-TPDDTCCAADEQCYIVDLPNRRYKS----SCLKCDMPCGRPA----------------LKDATGDDRCCLPRQVCRPAFSGAAGTKRTEC 317
            +CA   +PCG+      S    +   S T    CC  A  QC  DP S   + TKC  + ACA+GR  CG +        G   E TPD+ CCAADE+C+I        K     SC K    CG                   L  +T ++ CC   + C    SG     R  C
Sbjct:  119 DCAGNRQPCGH------SRAGNYPTHSTT----CCA-ADEQCTVDPDSGAAHTTKCTKL-ACAKGRQACGHKVTMFTNKHGHYFEQTPDNVCCAADEECHIGHRDGNVSKCKKTISCPKGREACGANFDGLHIFNDPNLTYYLYLVYSTPNNVCCATDESCNDTTSGGFDGSRMRC 282          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353470 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A836CIV9_9STRA0.000e+0100.00EGF-like domain-containing protein n=1 Tax=Tribone... [more]
A0A836CN39_9STRA4.600e-7460.34EGF-like domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z859_9STRA1.680e-6948.88EGF-like domain-containing protein n=1 Tax=Tribone... [more]
A0A835ZAJ2_9STRA7.210e-6449.11EGF-like domain-containing protein n=2 Tax=Tribone... [more]
A0A835ZAR6_9STRA1.830e-5848.39EGF-like domain-containing protein n=1 Tax=Tribone... [more]
A0A835ZEG4_9STRA1.980e-833.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZQ47_9STRA4.010e-630.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.10.25.10Laminincoord: 322..366
e-value: 1.1E-7
score: 33.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 423..453
NoneNo IPR availableCDDcd00054EGF_CAcoord: 326..363
e-value: 3.52341E-4
score: 36.0754
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 322..367
IPR000742EGF-like domainPROSITEPS00022EGF_1coord: 351..362
IPR000742EGF-like domainPROSITEPS01186EGF_2coord: 351..362
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 319..363
score: 13.125443

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_165contigContig_165:138410..146592 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353470mRNA_17039Tribonema minus UTEX_B_3156 mRNAContig_165 138410..146592 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353470|estExt_Genemark1.C_Ctg_1650012 ID=Trimin1|353470|estExt_Genemark1.C_Ctg_1650012|Name=jgi.p|Trimin1|353470|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=466bp
MSDTAAAADSARISKIMGNRVKALIEKYPWLYSTKSQHTGGPDLQEVSDE
LEAMLTVMSLVDAPPDMTSLAMQTMLANAKEHGARQRVEMGGAKKATTAD
RSAKDTVLGDVKQLSRVLDFNEKGEWAFIALTSKTFRSAYMVSTAAAHGL
AWGLSACKATPIRDDQMWGTECAPVVEPCGNNWQACSSEQYAFTAFSQTR
NQECCPNATHQCVEDPSSKHYGTKCVPIKACAEGRAPCGRRKGAVMETPD
DTCCAADEQCYIVDLPNRRYKSSCLKCDMPCGRPALKDATGDDRCCLPRQ
VCRPAFSGAAGTKRTECVYPFKCRKHTCKHGGKCVNGASPYVGHTGTFRK
CKCKPGFKGVFCEIKANNSGFEAPWSGNVSERAAAGAASALESAKELDEK
HHLREKAARAIVSFLRTANKIIKPGDREGEKGDASDPSARVGTTAQQRAA
ASADAKLPVATAVPI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom