Trimin1|353467|estExt_Genemark1.C_Ctg_1650007 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353467
Unique NameTrimin1|353467|estExt_Genemark1.C_Ctg_1650007
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length439
Homology
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BLAST of jgi.p|Trimin1|353467 vs. uniprot
Match: A0A835Z6P6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6P6_9STRA)

HSP 1 Score: 717 bits (1850), Expect = 2.160e-258
Identity = 438/438 (100.00%), Postives = 438/438 (100.00%), Query Frame = 0 
Query:    1 MEFVKKRKQQMGAWQKKRDSTPELRARHEFRKEIHALGQRGGWQEILARLDAVRVSGDPPMDIGVYHRSITALAKCDRFEEGTQLLVEMKGKGFQPTAKLFNAVIGAASRVGAWARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKALTLSDEMQERHYIRPDVAHFTYLIHGFGKADKAKRAIRLFADMQKRGFQPTTKTYGTSFYVPVKTYAAAIYAVARNGEADKAAEFMQXXXXXXAMKDAGVQPDVLSHLALAAALDNAGKTDAARQAGLEPAKLSAEVAARAVDVMDLHAHSLVIQAYAISASXXXXXXXXXXRQQHRAHPARDVRAPEANALSPQPSLLHDDMLAYIETLFAQDGPRPDAHTYQMVLDSCTRGAAGEDVLAAVRDSMARHGVAPIPFENRGXXXXXXXXXXAFGGIVLIAAAPVAT 438
            MEFVKKRKQQMGAWQKKRDSTPELRARHEFRKEIHALGQRGGWQEILARLDAVRVSGDPPMDIGVYHRSITALAKCDRFEEGTQLLVEMKGKGFQPTAKLFNAVIGAASRVGAWARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKALTLSDEMQERHYIRPDVAHFTYLIHGFGKADKAKRAIRLFADMQKRGFQPTTKTYGTSFYVPVKTYAAAIYAVARNGEADKAAEFMQXXXXXXAMKDAGVQPDVLSHLALAAALDNAGKTDAARQAGLEPAKLSAEVAARAVDVMDLHAHSLVIQAYAISASXXXXXXXXXXRQQHRAHPARDVRAPEANALSPQPSLLHDDMLAYIETLFAQDGPRPDAHTYQMVLDSCTRGAAGEDVLAAVRDSMARHGVAPIPFENRGXXXXXXXXXXAFGGIVLIAAAPVAT
Sbjct:    1 MEFVKKRKQQMGAWQKKRDSTPELRARHEFRKEIHALGQRGGWQEILARLDAVRVSGDPPMDIGVYHRSITALAKCDRFEEGTQLLVEMKGKGFQPTAKLFNAVIGAASRVGAWARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKALTLSDEMQERHYIRPDVAHFTYLIHGFGKADKAKRAIRLFADMQKRGFQPTTKTYGTSFYVPVKTYAAAIYAVARNGEADKAAEFMQXXXXXXAMKDAGVQPDVLSHLALAAALDNAGKTDAARQAGLEPAKLSAEVAARAVDVMDLHAHSLVIQAYAISASXXXXXXXXXXRQQHRAHPARDVRAPEANALSPQPSLLHDDMLAYIETLFAQDGPRPDAHTYQMVLDSCTRGAAGEDVLAAVRDSMARHGVAPIPFENRGXXXXXXXXXXAFGGIVLIAAAPVAT 438
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353467 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z6P6_9STRA2.160e-258100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 142..275
e-value: 2.0E-23
score: 84.7
coord: 5..141
e-value: 8.1E-19
score: 69.7
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 85..143
e-value: 1.2E-5
score: 25.3
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 167..209
e-value: 6.2E-10
score: 39.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 135..164
e-value: 4.5E-4
score: 18.2
coord: 172..203
e-value: 2.2E-6
score: 25.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 168..202
score: 11.268274
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 62..96
score: 9.97484
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 132..166
score: 9.514466
NoneNo IPR availablePANTHERPTHR47933PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIALcoord: 34..160
coord: 72..209
NoneNo IPR availablePANTHERPTHR47933:SF31OS06G0199100 PROTEINcoord: 34..160
NoneNo IPR availablePANTHERPTHR47933:SF31OS06G0199100 PROTEINcoord: 72..209
coord: 122..277
NoneNo IPR availablePANTHERPTHR47933PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIALcoord: 122..277

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_165contigContig_165:49218..63791 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353467mRNA_17035Tribonema minus UTEX_B_3156 mRNAContig_165 49218..63986 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353467|estExt_Genemark1.C_Ctg_1650007 ID=Trimin1|353467|estExt_Genemark1.C_Ctg_1650007|Name=jgi.p|Trimin1|353467|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=439bp
MEFVKKRKQQMGAWQKKRDSTPELRARHEFRKEIHALGQRGGWQEILARL
DAVRVSGDPPMDIGVYHRSITALAKCDRFEEGTQLLVEMKGKGFQPTAKL
FNAVIGAASRVGAWARASQELATMRNWGVKPDLHSYNLTIRAMARMGHWH
KALTLSDEMQERHYIRPDVAHFTYLIHGFGKADKAKRAIRLFADMQKRGF
QPTTKTYGTSFYVPVKTYAAAIYAVARNGEADKAAEFMQAAEFMQAMKDA
GVQPDVLSHLALAAALDNAGKTDAARQAGLEPAKLSAEVAARAVDVMDLH
AHSLVIQAYAISASLVIQAYAISARQQHRAHPARDVRAPEANALSPQPSL
LHDDMLAYIETLFAQDGPRPDAHTYQMVLDSCTRGAAGEDVLAAVRDSMA
RHGVAPIPFENRGGGGGGGAGGNAFGGIVLIAAAPVAT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat