Trimin1|153654|gw1.165.29.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|153654
Unique NameTrimin1|153654|gw1.165.29.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length200
Homology
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BLAST of jgi.p|Trimin1|153654 vs. uniprot
Match: A0A835Z9P2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9P2_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.250e-25
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 
Query:    1 MATFEAILTALSTAGKDMTATNLIRRMTIRGLEPSLRCYVSALGAHSKGANAESAV 56
            MATFEAILTALSTAGKDMTATNLIRRMTIRGLEPSLRCYVSALGAHSKGANAESAV
Sbjct:    1 MATFEAILTALSTAGKDMTATNLIRRMTIRGLEPSLRCYVSALGAHSKGANAESAV 56
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153654 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z9P2_9STRA1.250e-25100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..87
e-value: 6.0E-11
score: 44.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 88..200
e-value: 3.1E-25
score: 91.2
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 143..176
e-value: 1.6E-4
score: 19.6
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 94..151
e-value: 3.9E-9
score: 36.5
coord: 23..82
e-value: 5.4E-4
score: 20.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 105..139
score: 9.799459
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 140..174
score: 9.810421
NoneNo IPR availablePANTHERPTHR47933PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIALcoord: 2..199

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_165contigContig_165:64583..65182 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153654mRNA_17036Tribonema minus UTEX_B_3156 mRNAContig_165 64583..65182 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|153654|gw1.165.29.1 ID=Trimin1|153654|gw1.165.29.1|Name=jgi.p|Trimin1|153654|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=200bp
MATFEAILTALSTAGKDMTATNLIRRMTIRGLEPSLRCYVSALGAHSKGA
NAESAVALMNELKARGYTPTLLAYRFLIACLGRAKQGAAALPYFDELKAA
GLEPDVLMYSVVLGAVGRSGLWQRAFEILTEMRLRQLAPSVQCYNSVIFA
CAAGGEWRRAIATLRRMAVLGVPPNARSHLAAIEACAAAGQWQEAVTIVR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat