mRNA_17036 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|153654
Unique NamemRNA_17036
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|153654 vs. uniprot
Match: A0A835Z9P2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9P2_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.250e-25
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 MATFEAILTALSTAGKDMTATNLIRRMTIRGLEPSLRCYVSALGAHSKGANAESAV 168
            MATFEAILTALSTAGKDMTATNLIRRMTIRGLEPSLRCYVSALGAHSKGANAESAV
Sbjct:    1 MATFEAILTALSTAGKDMTATNLIRRMTIRGLEPSLRCYVSALGAHSKGANAESAV 56
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153654 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z9P2_9STRA1.250e-25100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_165contigContig_165:64583..65182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|153654|gw1.165.29.1
Hectar predicted targeting categoryother localisation
TranscriptId153976
TrackFilteredModels1
ProteinId153654
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153654gene_17036Tribonema minus UTEX_B_3156 geneContig_165 64583..65182 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17036_1exon_17036_1Tribonema minus UTEX_B_3156 exonContig_165 64583..65182 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17036CDS_17036Tribonema minus UTEX_B_3156 CDSContig_165 64583..65182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153654Trimin1|153654|gw1.165.29.1Tribonema minus UTEX_B_3156 polypeptideContig_165 64583..65182 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17036 ID=mRNA_17036|Name=jgi.p|Trimin1|153654|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=600bp|location=Sequence derived from alignment at Contig_165:64583..65182+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACCTTCGAGGCCATCCTGACTGCTCTGAGCACGGCTGGCAAGGA
CATGACGGCCACCAACCTCATCAGAAGGATGACGATCAGGGGCCTGGAGC
CCTCGCTCAGGTGCTATGTCAGCGCGCTGGGCGCCCATAGCAAGGGCGCC
AACGCGGAGTCCGCCGTGGCCCTCATGAACGAGCTGAAAGCGCGCGGCTA
CACGCCCACGCTCCTCGCCTACCGGTTCCTCATCGCGTGCCTCGGGCGCG
CCAAGCAGGGCGCCGCCGCGCTCCCCTACTTCGACGAACTCAAGGCGGCG
GGCCTGGAGCCGGACGTGCTCATGTACTCTGTCGTTCTGGGCGCGGTCGG
GCGCTCGGGGCTCTGGCAGCGCGCCTTCGAGATCCTCACCGAGATGCGCC
TGCGCCAGCTCGCGCCGAGCGTGCAGTGCTACAACAGCGTCATCTTCGCG
TGCGCCGCCGGCGGCGAGTGGCGCCGCGCCATCGCGACGCTGCGCCGCAT
GGCCGTCCTCGGCGTGCCGCCGAACGCGCGCTCGCACCTCGCCGCCATCG
AGGCGTGCGCGGCCGCGGGGCAGTGGCAGGAGGCGGTGACGATAGTGCGC
back to top

protein sequence of jgi.p|Trimin1|153654

>Trimin1|153654|gw1.165.29.1 ID=Trimin1|153654|gw1.165.29.1|Name=jgi.p|Trimin1|153654|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=200bp
MATFEAILTALSTAGKDMTATNLIRRMTIRGLEPSLRCYVSALGAHSKGA
NAESAVALMNELKARGYTPTLLAYRFLIACLGRAKQGAAALPYFDELKAA
GLEPDVLMYSVVLGAVGRSGLWQRAFEILTEMRLRQLAPSVQCYNSVIFA
CAAGGEWRRAIATLRRMAVLGVPPNARSHLAAIEACAAAGQWQEAVTIVR
back to top

mRNA from alignment at Contig_165:64583..65182+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17036 ID=mRNA_17036|Name=jgi.p|Trimin1|153654|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=600bp|location=Sequence derived from alignment at Contig_165:64583..65182+ (Tribonema minus UTEX_B_3156 )
ATGGCCACCTTCGAGGCCATCCTGACTGCTCTGAGCACGGCTGGCAAGGA
CATGACGGCCACCAACCTCATCAGAAGGATGACGATCAGGGGCCTGGAGC
CCTCGCTCAGGTGCTATGTCAGCGCGCTGGGCGCCCATAGCAAGGGCGCC
AACGCGGAGTCCGCCGTGGCCCTCATGAACGAGCTGAAAGCGCGCGGCTA
CACGCCCACGCTCCTCGCCTACCGGTTCCTCATCGCGTGCCTCGGGCGCG
CCAAGCAGGGCGCCGCCGCGCTCCCCTACTTCGACGAACTCAAGGCGGCG
GGCCTGGAGCCGGACGTGCTCATGTACTCTGTCGTTCTGGGCGCGGTCGG
GCGCTCGGGGCTCTGGCAGCGCGCCTTCGAGATCCTCACCGAGATGCGCC
TGCGCCAGCTCGCGCCGAGCGTGCAGTGCTACAACAGCGTCATCTTCGCG
TGCGCCGCCGGCGGCGAGTGGCGCCGCGCCATCGCGACGCTGCGCCGCAT
GGCCGTCCTCGGCGTGCCGCCGAACGCGCGCTCGCACCTCGCCGCCATCG
AGGCGTGCGCGGCCGCGGGGCAGTGGCAGGAGGCGGTGACGATAGTGCGC
back to top

Coding sequence (CDS) from alignment at Contig_165:64583..65182+

>mRNA_17036 ID=mRNA_17036|Name=jgi.p|Trimin1|153654|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=600bp|location=Sequence derived from alignment at Contig_165:64583..65182+ (Tribonema minus UTEX_B_3156 )
ATGGCCACCTTCGAGGCCATCCTGACTGCTCTGAGCACGGCTGGCAAGGA
CATGACGGCCACCAACCTCATCAGAAGGATGACGATCAGGGGCCTGGAGC
CCTCGCTCAGGTGCTATGTCAGCGCGCTGGGCGCCCATAGCAAGGGCGCC
AACGCGGAGTCCGCCGTGGCCCTCATGAACGAGCTGAAAGCGCGCGGCTA
CACGCCCACGCTCCTCGCCTACCGGTTCCTCATCGCGTGCCTCGGGCGCG
CCAAGCAGGGCGCCGCCGCGCTCCCCTACTTCGACGAACTCAAGGCGGCG
GGCCTGGAGCCGGACGTGCTCATGTACTCTGTCGTTCTGGGCGCGGTCGG
GCGCTCGGGGCTCTGGCAGCGCGCCTTCGAGATCCTCACCGAGATGCGCC
TGCGCCAGCTCGCGCCGAGCGTGCAGTGCTACAACAGCGTCATCTTCGCG
TGCGCCGCCGGCGGCGAGTGGCGCCGCGCCATCGCGACGCTGCGCCGCAT
GGCCGTCCTCGGCGTGCCGCCGAACGCGCGCTCGCACCTCGCCGCCATCG
AGGCGTGCGCGGCCGCGGGGCAGTGGCAGGAGGCGGTGACGATAGTGCGC
back to top