mRNA_17053 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|136992
Unique NamemRNA_17053
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|136992 vs. uniprot
Match: A0A836CK44_9STRA (MULE domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK44_9STRA)

HSP 1 Score: 142 bits (359), Expect = 4.000e-43
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1
Query:    1 IVVAVAFGIAMLDAFGAGDDRMVLLDATGGTNKYGYQLYSLVVVDDFREDVPVAFMLTSSQAAKEVKLFMDVSV 222
            IVVAVAFGIAMLDAFGAGDDRMVLLDATGGTNKYGYQLYSLVVVDDFREDVPVAFMLTSSQAAKEVKLFMDVSV
Sbjct:    1 IVVAVAFGIAMLDAFGAGDDRMVLLDATGGTNKYGYQLYSLVVVDDFREDVPVAFMLTSSQAAKEVKLFMDVSV 74          
BLAST of jgi.p|Trimin1|136992 vs. uniprot
Match: A0A7J7PEX3_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PEX3_9CHLO)

HSP 1 Score: 50.1 bits (118), Expect = 2.050e-6
Identity = 24/54 (44.44%), Postives = 37/54 (68.52%), Query Frame = 1
Query:   61 RMVLLDATGGTNKYGYQLYSLVVVDDFREDVPVAFMLTSSQAAKEVKLFMDVSV 222
            ++VLLDATGGTN+YG+  +++VVVD+F     VA  +TSS  A  +  F+  ++
Sbjct:    1 KVVLLDATGGTNRYGFTSFAVVVVDEFNNGCLVAPYITSSGVADVLAPFLTAAL 54          
BLAST of jgi.p|Trimin1|136992 vs. uniprot
Match: UPI000C0507AC (uncharacterized protein LOC111335012 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C0507AC)

HSP 1 Score: 52.0 bits (123), Expect = 4.320e-6
Identity = 19/59 (32.20%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   37 DAFGAGDDRMVLLDATGGTNKYGYQLYSLVVVDDFREDVPVAFMLTSSQAAKEVKLFMD 213
            + F     +++ +DAT GT  Y +QL +++V+DDF E +PVA+M+++ ++   +++F  
Sbjct:  123 EMFNKDGSKLICVDATHGTTAYDFQLITVLVIDDFNEGIPVAWMISNKESTDSLRVFFQ 181          
BLAST of jgi.p|Trimin1|136992 vs. uniprot
Match: UPI0015ACFD42 (uncharacterized protein LOC118196736 n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015ACFD42)

HSP 1 Score: 51.2 bits (121), Expect = 1.100e-5
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 1
Query:   25 IAMLDAFGAGDDRMVLLDATGGTNKYGYQLYSLVVVDDFREDVPVAFMLTSSQAAKEVKLFMD 213
            +AML  FG    R+V +D+T GTNKY + L +L+VVD++ E  PVAF + + +    +K+F  
Sbjct:  313 LAMLKTFGK---RIVCVDSTHGTNKYKFNLITLLVVDEYDEGFPVAFCICNREDKSVLKIFFS 372          
BLAST of jgi.p|Trimin1|136992 vs. uniprot
Match: A0A7S0WNB5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WNB5_9CHLO)

HSP 1 Score: 50.4 bits (119), Expect = 1.180e-5
Identity = 23/54 (42.59%), Postives = 37/54 (68.52%), Query Frame = 1
Query:   52 GDDRMVLLDATGGTNKYGYQLYSLVVVDDFREDVPVAFMLTSSQAAKEVKLFMD 213
            G  R++ LDAT  TN+YG+ L++L+V+D     VPVA+ L S Q A +++L++ 
Sbjct:  144 GHQRVLELDATFSTNRYGFSLFTLMVIDHHGNGVPVAWALMSRQTAVDLELWLS 197          
BLAST of jgi.p|Trimin1|136992 vs. uniprot
Match: UPI000719E4C5 (uncharacterized protein LOC106819642 n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719E4C5)

HSP 1 Score: 50.8 bits (120), Expect = 1.520e-5
Identity = 20/49 (40.82%), Postives = 35/49 (71.43%), Query Frame = 1
Query:   61 RMVLLDATGGTNKYGYQLYSLVVVDDFREDVPVAFMLTSSQAAKEVKLF 207
            ++V LD T GT  Y +QL +++V+DDF E +P A+++T+ + A  +K+F
Sbjct:  670 KVVCLDGTHGTTAYDFQLITVMVIDDFNEGIPAAWLITNRETADALKVF 718          
BLAST of jgi.p|Trimin1|136992 vs. uniprot
Match: A0A2L2Z4G6_PARTP (MULE domain-containing protein (Fragment) n=2 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2Z4G6_PARTP)

HSP 1 Score: 47.4 bits (111), Expect = 2.750e-5
Identity = 24/61 (39.34%), Postives = 37/61 (60.66%), Query Frame = 1
Query:   31 MLDAFGAGDDRMVLLDATGGTNKYGYQLYSLVVVDDFREDVPVAFMLTSSQAAKEVKLFMD 213
            +L+ FG      V LD T G N YG++L +L+V+DD R+  P AFM++S      +++F D
Sbjct:    1 LLNKFGT---DCVCLDGTHGLNAYGFELITLLVIDDLRQGFPCAFMVSSRCDQLVLEIFFD 58          
BLAST of jgi.p|Trimin1|136992 vs. uniprot
Match: A0A6G0TFZ8_APHGL (Uncharacterized protein n=1 Tax=Aphis glycines TaxID=307491 RepID=A0A6G0TFZ8_APHGL)

HSP 1 Score: 49.3 bits (116), Expect = 5.250e-5
Identity = 27/69 (39.13%), Postives = 41/69 (59.42%), Query Frame = 1
Query:    1 IVVAVAFGIAMLDAFGAGDDRMVLLDATGGTNKYGYQLYSLVVVDDFREDVPVAFMLTSSQAAKEVKLF 207
            I++   F   ML  FG  +D+ + +D T G N Y +QLY L+VVD++  ++PVAF L++       KLF
Sbjct:  150 IIIMTDFQAEMLVKFG--NDK-ICVDGTHGLNSYSFQLYILLVVDEYGNEIPVAFCLSNKSDTATYKLF 215          
BLAST of jgi.p|Trimin1|136992 vs. uniprot
Match: A0A6P7GVN3_DIAVI (uncharacterized protein LOC114341342 n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7GVN3_DIAVI)

HSP 1 Score: 49.3 bits (116), Expect = 5.270e-5
Identity = 22/52 (42.31%), Postives = 37/52 (71.15%), Query Frame = 1
Query:   52 GDDRMVLLDATGGTNKYGYQLYSLVVVDDFREDVPVAFMLTSSQAAKEVKLF 207
            GDD  + +D T G N YG++L++++V+DD RE  P AF+++S   A+ +K+F
Sbjct:  366 GDD-CICMDGTHGLNGYGFELHTILVLDDLREGYPSAFLISSRNDAELMKIF 416          
BLAST of jgi.p|Trimin1|136992 vs. uniprot
Match: UPI0016527011 (uncharacterized protein LOC118478158 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI0016527011)

HSP 1 Score: 48.9 bits (115), Expect = 7.160e-5
Identity = 17/51 (33.33%), Postives = 40/51 (78.43%), Query Frame = 1
Query:   61 RMVLLDATGGTNKYGYQLYSLVVVDDFREDVPVAFMLTSSQAAKEVKLFMD 213
            +++L+D+T GT +Y + L +++V+DD+R+ +PVA+ +++ + +  +K+FM+
Sbjct:  157 KIILMDSTHGTTQYDFYLTTILVLDDYRQSMPVAWAISNREDSNILKIFME 207          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136992 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A836CK44_9STRA4.000e-43100.00MULE domain-containing protein (Fragment) n=2 Tax=... [more]
A0A7J7PEX3_9CHLO2.050e-644.44Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
UPI000C0507AC4.320e-632.20uncharacterized protein LOC111335012 n=1 Tax=Stylo... [more]
UPI0015ACFD421.100e-541.27uncharacterized protein LOC118196736 n=1 Tax=Stego... [more]
A0A7S0WNB5_9CHLO1.180e-542.59Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
UPI000719E4C51.520e-540.82uncharacterized protein LOC106819642 n=1 Tax=Priap... [more]
A0A2L2Z4G6_PARTP2.750e-539.34MULE domain-containing protein (Fragment) n=2 Tax=... [more]
A0A6G0TFZ8_APHGL5.250e-539.13Uncharacterized protein n=1 Tax=Aphis glycines Tax... [more]
A0A6P7GVN3_DIAVI5.270e-542.31uncharacterized protein LOC114341342 n=1 Tax=Diabr... [more]
UPI00165270117.160e-533.33uncharacterized protein LOC118478158 n=1 Tax=Aplys... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_165contigContig_165:280854..281075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|136992|gw1.165.15.1
DescriptionMULE transposase domain
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs28MET@1|root,2QTYA@2759|Eukaryota,37XPJ@33090|Viridiplantae,34KC8@3041|Chlorophyta
Evalue1.24e-11
Seed ortholog554065.XP_005843545.1
Hectar predicted targeting categorysignal peptide
TranscriptId137314
TrackFilteredModels1
ProteinId136992
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136992gene_17053Tribonema minus UTEX_B_3156 geneContig_165 280854..281075 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17053_1exon_17053_1Tribonema minus UTEX_B_3156 exonContig_165 280854..281075 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17053CDS_17053Tribonema minus UTEX_B_3156 CDSContig_165 280854..281075 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136992Trimin1|136992|gw1.165.15.1Tribonema minus UTEX_B_3156 polypeptideContig_165 280854..281075 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17053 ID=mRNA_17053|Name=jgi.p|Trimin1|136992|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=222bp|location=Sequence derived from alignment at Contig_165:280854..281075- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATCGTTGTGGCTGTTGCATTTGGCATCGCCATGCTTGATGCATTTGGAGC
CGGAGATGACCGTATGGTGCTGCTGGATGCAACGGGGGGGACCAACAAGT
ATGGCTACCAGCTGTACAGCCTGGTGGTGGTGGATGACTTCAGGGAAGAC
GTACCTGTCGCATTCATGCTCACCTCGAGCCAGGCAGCCAAGGAGGTCAA
GCTTTTCATGGACGTAAGTGTC
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protein sequence of jgi.p|Trimin1|136992

>Trimin1|136992|gw1.165.15.1 ID=Trimin1|136992|gw1.165.15.1|Name=jgi.p|Trimin1|136992|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=74bp
IVVAVAFGIAMLDAFGAGDDRMVLLDATGGTNKYGYQLYSLVVVDDFRED
VPVAFMLTSSQAAKEVKLFMDVSV
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mRNA from alignment at Contig_165:280854..281075-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17053 ID=mRNA_17053|Name=jgi.p|Trimin1|136992|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=222bp|location=Sequence derived from alignment at Contig_165:280854..281075- (Tribonema minus UTEX_B_3156 )
ATCGTTGTGGCTGTTGCATTTGGCATCGCCATGCTTGATGCATTTGGAGC CGGAGATGACCGTATGGTGCTGCTGGATGCAACGGGGGGGACCAACAAGT ATGGCTACCAGCTGTACAGCCTGGTGGTGGTGGATGACTTCAGGGAAGAC GTACCTGTCGCATTCATGCTCACCTCGAGCCAGGCAGCCAAGGAGGTCAA GCTTTTCATGGACGTAAGTGTC
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Coding sequence (CDS) from alignment at Contig_165:280854..281075-

>mRNA_17053 ID=mRNA_17053|Name=jgi.p|Trimin1|136992|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=222bp|location=Sequence derived from alignment at Contig_165:280854..281075- (Tribonema minus UTEX_B_3156 )
ATCGTTGTGGCTGTTGCATTTGGCATCGCCATGCTTGATGCATTTGGAGC
CGGAGATGACCGTATGGTGCTGCTGGATGCAACGGGGGGGACCAACAAGT
ATGGCTACCAGCTGTACAGCCTGGTGGTGGTGGATGACTTCAGGGAAGAC
GTACCTGTCGCATTCATGCTCACCTCGAGCCAGGCAGCCAAGGAGGTCAA
GCTTTTCATGGACGTAAGTGTC
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