mRNA_16189 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353448
Unique NamemRNA_16189
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|353448 vs. uniprot
Match: A0A836CIY2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIY2_9STRA)

HSP 1 Score: 831 bits (2147), Expect = 2.380e-304
Identity = 417/417 (100.00%), Postives = 417/417 (100.00%), Query Frame = 1
Query:    1 MQQDKLSACAVDAGRGVVYVTGSTWGDFGTPHYKPGTEGSQLMDYYNDFLAMRMDYATGEIVWSYQDQGGKQDEFVTADIEPAFGDLLVAGTTSTPWGCTDATCPYFAESVVTRPDFVAARLALADGQPRWKWQAGTRGSEVTYAASYSAVTGQYVVAGATASNYAKERVGMGLRDTRAYPYDSDMASTTLTAFAKPVAKWQDGTARGDRITAVAHAPTGEVYLAGDTSGAFADDAVASLGANMVVIKQGADGVELWRHQNAGIVDTRITCAATDADGNVYVGGYARLAATEEDFYVAKLDAATGAVLWEYKAGTAESDIIQGIAVDAAGNIAVAGYTAGKFGAVNKGLYDFVVVGLSPLGVQQWAWQDGTDQSDRLNAIASDTDAGTFVVAGDTYGTYTAPNAGSWDLIVMKLTAA 1251
            MQQDKLSACAVDAGRGVVYVTGSTWGDFGTPHYKPGTEGSQLMDYYNDFLAMRMDYATGEIVWSYQDQGGKQDEFVTADIEPAFGDLLVAGTTSTPWGCTDATCPYFAESVVTRPDFVAARLALADGQPRWKWQAGTRGSEVTYAASYSAVTGQYVVAGATASNYAKERVGMGLRDTRAYPYDSDMASTTLTAFAKPVAKWQDGTARGDRITAVAHAPTGEVYLAGDTSGAFADDAVASLGANMVVIKQGADGVELWRHQNAGIVDTRITCAATDADGNVYVGGYARLAATEEDFYVAKLDAATGAVLWEYKAGTAESDIIQGIAVDAAGNIAVAGYTAGKFGAVNKGLYDFVVVGLSPLGVQQWAWQDGTDQSDRLNAIASDTDAGTFVVAGDTYGTYTAPNAGSWDLIVMKLTAA
Sbjct:    1 MQQDKLSACAVDAGRGVVYVTGSTWGDFGTPHYKPGTEGSQLMDYYNDFLAMRMDYATGEIVWSYQDQGGKQDEFVTADIEPAFGDLLVAGTTSTPWGCTDATCPYFAESVVTRPDFVAARLALADGQPRWKWQAGTRGSEVTYAASYSAVTGQYVVAGATASNYAKERVGMGLRDTRAYPYDSDMASTTLTAFAKPVAKWQDGTARGDRITAVAHAPTGEVYLAGDTSGAFADDAVASLGANMVVIKQGADGVELWRHQNAGIVDTRITCAATDADGNVYVGGYARLAATEEDFYVAKLDAATGAVLWEYKAGTAESDIIQGIAVDAAGNIAVAGYTAGKFGAVNKGLYDFVVVGLSPLGVQQWAWQDGTDQSDRLNAIASDTDAGTFVVAGDTYGTYTAPNAGSWDLIVMKLTAA 417          
BLAST of jgi.p|Trimin1|353448 vs. uniprot
Match: A0A2D5TXS0_9PROT (Big_5 domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2D5TXS0_9PROT)

HSP 1 Score: 109 bits (273), Expect = 2.380e-22
Identity = 82/220 (37.27%), Postives = 112/220 (50.91%), Query Frame = 1
Query:  604 QDGTARGDRITAVAHAPTGEVYLAGDTSGAFADDAVASLGANMVVIKQGADGVELWRHQNAGIVDTRITCAATDADGNVYVGGYARLA------ATEEDFYVAKLDAATGAVLWEYKAGTAESDIIQGIAVDAAGNIAVAGYTAGKF-GAVNKGLYDFVVVGLSPLGVQQWAWQDGTDQSDRLNAIASDTDAGTFVVAGDTYGTYTA-PNAGSWDLIVMK 1239
            Q GT+  D    VA   +G VYLAG TSG   D    S   ++ V+K  + G + W  Q         +  ATD+ GNVYV GY R        +  +DF+V K ++ +G   W  + GT+ SD   G+A D++GN  VAG T+G   G  N G  D  V+     G +QW  Q GT  SD  + +A+D+ +G   VAG T G      +AGSWDL V+K
Sbjct:  202 QLGTSSHDFAFGVATGSSGNVYLAGYTSGGL-DGNSNSGNRDLFVLKYDSSGTKQWTKQLGTSDYEEASGVATDSSGNVYVAGYTRGGLDGNSNSGNKDFFVIKYNS-SGTKQWTKQLGTSSSDSASGVATDSSGNFYVAGSTSGGLDGNTNSGSSDLFVLKYDSSGTKQWTKQLGTSSSDSASGVATDS-SGNVYVAGSTEGGLDGNSSAGSWDLFVVK 418          
BLAST of jgi.p|Trimin1|353448 vs. uniprot
Match: A0A380TGR6_9ZZZZ (Uncharacterized protein n=1 Tax=metagenome TaxID=256318 RepID=A0A380TGR6_9ZZZZ)

HSP 1 Score: 101 bits (251), Expect = 9.020e-20
Identity = 98/304 (32.24%), Postives = 134/304 (44.08%), Query Frame = 1
Query:  367 ALADGQPR--WKWQAGTRGSEVTYAASYSAVTGQYVVAGATASNYAKERVGMGLRDTRAYPYDSDMASTTLTAFAKPVAKWQDGTARGDRITAVAHAPTGEVYLAGDTSG--AFADDAVASLGAN------MVVIKQGADGVELWRHQ-NAGIVDTRITCAATDADGNVYVGGYARLAATEE----DFYVAKLDAATGAVLWEYKAGTAESDIIQGIAVDAAGNIAVAGYTAGKFGAVNKGLYDFVVVGLSPLGVQQWAWQDGTDQSDRLNAIASDTDAGTFVVAGDTYGTYTAPNAGSWDLIV 1233
            A AD  P   WK + G  G +   A +  AV G  +VAG T   +A    G             D+          P+  W+   A G           GE +LA D+ G  A A D   S+G +        V+    DG   WRHQ     +D     AA+DA G+V + G+      E+    D  V K  AA GA  W ++ GT   D I G+A+DAAGN+ VAG T G      +G  D  +V  +P G + W  Q G+  +DRL  +A D ++   +VAGDT G    P+ G WD+ V
Sbjct:   44 AHADPAPALLWKHRVGGTGFDYATAVATDAV-GNVIVAGPTNGPFAGPNKG-----------GVDIFIAAFAGSGTPL--WKRKLASGKS--------EGEAHLAIDSDGNLAVASDTEGSIGQSNRGRYDAFVVSYAPDGTVRWRHQPGTRRLDVLTAVAASDA-GHVVIAGWTEGRLAEKKGGTDGLVIKY-AANGAEQWRHQLGTTGDDEIAGVAIDAAGNVVVAGNTDGSLVGTGEGNTDGFIVRYAPNGTELWRTQFGSGLTDRLRRVAID-ESRNIIVAGDTSGDIGGPSNGEWDVFV 322          
BLAST of jgi.p|Trimin1|353448 vs. uniprot
Match: A0A3A0DUK6_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0DUK6_9BACT)

HSP 1 Score: 102 bits (255), Expect = 1.170e-19
Identity = 125/416 (30.05%), Postives = 174/416 (41.83%), Query Frame = 1
Query:   22 ACAVDAGRGVVYVTGSTWGDFGTPHYKPGTEGSQLMDYYNDFLAMRMDYATGEIVWSYQDQGGKQDEFVTADIEPAFGDLLVAGTTSTPWGCTDATCPYFAESVVTRPDFVAARLALADGQPRWKWQAGTRGSEVTYAASYSAVTGQYVVAGATASNYAKERVGMGLRDTRAY--PYDSDMASTTLTAFAKPVAKWQDGTARGDRITAVAHAPTGEVYLAGDTSGAFADDAVASLGANMVVIKQGADGVELWRHQNAGIVDTRITCAATDADGNVYVGGYAR--LAATEE---DFYVAKLDAATGAVLWEYKAGTAESDIIQGIAVDAAGNIAVAGYTAGKFGAVNKGLYDFVVVGLSPLGVQQWAWQDGTDQSDRLNAIASDTDAGTFVVAGDTYGTYTAPNAGSWDLIVMKLTA 1248
            A A+DA  G  Y  G T GD    +      GS      ND +  ++D A G  +W+ Q  G  + +        A G++ V+G T    G  +A           + D   ++   ADGQ  W  Q G+   +V    +  A    Y+V G        +  G  L  T  Y   YD+D  +   T            T   D   +VA    G VY  G T+G  A     +L A   V +   +G  +W  Q     D        DA+GNVY  G     LA       DF+V K D   G +LW  + GT+ +D  +G+AVDA GN+ VAG+TAG FG  N G+ D  +      G +Q   Q GT  SD     A D  AG   +A  + G+  A +AG WD++  KL+A
Sbjct: 1507 AMAIDAA-GNSYFAGYTQGDLVVANL-----GS------NDVILGKIDPA-GNRLWTIQ-FGTPEGDVARGVAVDADGNVFVSGDTIGSLGGPNA----------GQTDAFLSKYT-ADGQLIWSQQLGSPALDVNRGLALDADGNAYIVGGTNG-----DLGGTNLAGTDGYIAKYDTD-GNLLWTRILGT-------TGDNDSFLSVAVDAAGNVYGGGVTNGDLAAQNAGALDA--FVARYDREGNRVWTRQLGTSADEIGHNVRLDANGNVYTTGTTSGSLAGPNRGGSDFHVHKFDP-QGTLLWAVQDGTSAADQQRGLAVDAEGNVIVAGFTAGNFGRPNLGVNDLFLARYDTAGTRQSVLQFGTQASDLPWGAAVDA-AGNVYLAAISQGSLAANHAGGWDVVFAKLSA 1880          
BLAST of jgi.p|Trimin1|353448 vs. uniprot
Match: A0A7D5RZM5_9PROT (SBBP repeat-containing protein n=1 Tax=Defluviicoccus sp. TaxID=2682137 RepID=A0A7D5RZM5_9PROT)

HSP 1 Score: 98.6 bits (244), Expect = 9.930e-19
Identity = 91/297 (30.64%), Postives = 127/297 (42.76%), Query Frame = 1
Query:  376 DGQPRWKWQAGTRGSEVTYAASYSAVTGQYVVAGATASNYAKERVGMGLRDTRAYPYDSDMASTTLTAFAKPVAKWQDGTARGDRITAVAHAPTGEVYLAGDTSGAFADDAVASLGANMVVIKQGADGVELW-RHQNAGIVDTRITCAATDADGNVYVGGYARLAAT-----EEDFYVAKLDAATGAVLWEYKAGTAESDIIQGIAVDAAGNIAVAGYTAGKFGAVNKGLYDFVVVGLSPLGVQQWAWQDGTDQSDRLNAIASDTDAGTFVVAGDTYGTYTAPNAGSWDLIVMKLTA 1248
            DG+  W+ Q GT   +V YA +   V G   + G T  +        G  D     +D D          + + K Q GTAR +    VA    G VYL G T G     +  SL  ++ +IK   +G  LW RH    + D   +    DADGNVY+ G    A         D ++ K D   G +LW+ + GT   D + GIA D +GN+ V G T G  G  + G  D  V+     G   W  Q GT   D  +  A+  D   ++V G T G     + G+ D  V++L A
Sbjct:   83 DGKELWRRQPGTTEGDVPYAIATD-VNGNVYITGVTTGSLGGAY--KGFNDAFLIKFDRD---------GRILWKRQPGTARSEWGKGVATDADGNVYLVGYTDGPLGGASKGSL--DVFMIKFDRNGRILWKRHMGTSLRD-EASAVVADADGNVYLAGQTSGALAGPNRGSYDTFIVKFDGG-GRILWKRQLGTKAFDTVTGIATDTSGNVYVVGRTDGALGGASAGGADAFVIKFGSTGDVLWKRQLGTAGYDAAHGTATGADGSVYIV-GQTLGALGGSSLGNVDGFVIQLDA 362          
BLAST of jgi.p|Trimin1|353448 vs. uniprot
Match: A0A1Q9F4G3_SYMMI (Calmodulin n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9F4G3_SYMMI)

HSP 1 Score: 97.1 bits (240), Expect = 8.520e-18
Identity = 63/175 (36.00%), Postives = 95/175 (54.29%), Query Frame = 1
Query:  751 ADGVELWRHQNAGIVDTRITCAATDADGNVYVGGYARLA------ATEEDFYVAKLDAATGAVLWEYKAGTAESDIIQGIAVDAAGNIAVAGYTAGKF-GAVNKGLYDFVVVGLSPLGVQQWAWQDGTDQSDRLNAIASDTDAGTFVVAGDTYGTYTA-PNAGSWDLIVMKLTAA 1251
            ++G   W  Q     D R+  A  D+ G++ V G +  +      A + DF V KL  A G + W ++ GT  +D  +   VD++GNI +AG++ G F G  N G YD VV+ LS  G  QW +Q GT   D L A+  ++ +G  V AG + G++    NAG WD++VMKL ++
Sbjct:  751 SEGTFEWIFQRGTSQDDRLLAAQVDSSGDIVVAGRSSGSFEGYTNAGDWDFVVMKLSGA-GTLQWIFQTGTTGTDYAEAAHVDSSGNIVLAGHSTGSFEGHANAGDYDMVVIKLSNSGTLQWIFQTGTSAVDNLRAVQVES-SGNVVAAGHSTGSFEGYTNAGVWDVVVMKLNSS 923          
BLAST of jgi.p|Trimin1|353448 vs. uniprot
Match: A0A532TTN2_9EURY (Uncharacterized protein n=1 Tax=Hadesarchaea archaeon B3_Hades TaxID=2012484 RepID=A0A532TTN2_9EURY)

HSP 1 Score: 92.0 bits (227), Expect = 2.840e-17
Identity = 74/220 (33.64%), Postives = 106/220 (48.18%), Query Frame = 1
Query:  604 QDGTARGDRITAVAHAPTGEVYLAGDTSGAFADDAVASLGANMVVIKQGADGVELWRHQNAGIVDTRITCAATDADGNVYVGGYA------RLAATEEDFYVAKLDAATGAVLWEYKAGTAESDIIQGIAVDAAGNIAVAGYTAGKF-GAVNKGLYDFVVVGLSPLGVQQWAWQDGTDQSDRLNAIASDTDAGTFVVAGDTYGTYTAP-NAGSWDLIVMK 1239
            Q GT   D  T +    +G VY+AG+T GA   ++ +S G+++ V K    G ELW  Q     +   T  A DA GNVY  GY       + ++  +D ++ K D   G  LW  + GT+  D  + +AVDA+GN+ VAG T+G   G  + G  D  V      G + W  Q GT   D    +A DT    +V AG TYG      ++G  D  ++K
Sbjct:   41 QFGTPANDYATDIVVDASGNVYVAGETVGALPGES-SSGGSDVFVRKYDGSGSELWTRQFGTSANDHATDVAVDASGNVYAAGYTGGALPGQSSSGSDDAFIRKYDG-EGNELWTKQFGTSTYDYAESVAVDASGNVYVAGLTSGALPGESSSGGGDAFVRKYDGEGNELWTKQFGTSTYDEAYDVAVDTFDNVYV-AGQTYGALPGQTSSGDGDAFLVK 257          
BLAST of jgi.p|Trimin1|353448 vs. uniprot
Match: A0A1Q7E7G1_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium 13_1_40CM_66_11 TaxID=1805195 RepID=A0A1Q7E7G1_9BACT)

HSP 1 Score: 94.4 bits (233), Expect = 3.440e-17
Identity = 85/268 (31.72%), Postives = 111/268 (41.42%), Query Frame = 1
Query:  457 GQYVVAGATASNYAKERVGMGLRDTRAYPYDSDMASTTLTAFAKPVAKWQDGTARGDRITAVAHAPTGEVYLAGDTSGAFADDAVASLGANMVVIKQGADGVELWRHQ--NAGIVDTRITCAATDADGNVYVGGYAR--LAATEE---DFYVAKLDAATGAVLWEYKAGTAESDIIQGIAVDAAGNIAVAGYTAGKFGAVNKGLYDFVVVGLSPLGVQQWAWQDGTDQSDRLNAIASDTDAGTFVVAGDTYGTYTAPNAGSWDLIVMK 1239
            G   VAG T  + +      G  D     YD+      L  F    + W  G A             G V++AG T GA     + S  A+  + K    G +LW  Q   + I D      A D  GNVYV G     L    +   D ++AK D  TG  LW  + GT  +D+   +AVDA GN+ +AGYT G  G  N+G  D  +      G Q W  Q GT   D +N +A D+  G   VAG T G     N G  D  + K
Sbjct:  196 GNVYVAGVTQGSLSG--TNQGSYDAFLAKYDASDTQLWLKQFGTSFSDWPFGMATDAE---------GNVFVAGTTEGALPSRPIQSF-AHAFLAKYDGAGAQLWVQQLDTSSIKDA--LGVAVDVGGNVYVAGSTNGNLGGPNQFLTDAFLAKFDR-TGTQLWVKQLGTGSTDVASSVAVDAVGNVYLAGYTFGSLGGPNQGEADVFLARYDRSGTQLWVEQFGTTSFDEINGVAVDS-GGQIYVAGVTEGALGDANQGFADAFLAK 447          
BLAST of jgi.p|Trimin1|353448 vs. uniprot
Match: A0A7D5S3X0_9PROT (SBBP repeat-containing protein n=1 Tax=Defluviicoccus sp. TaxID=2682137 RepID=A0A7D5S3X0_9PROT)

HSP 1 Score: 92.8 bits (229), Expect = 6.250e-17
Identity = 95/296 (32.09%), Postives = 130/296 (43.92%), Query Frame = 1
Query:  376 DGQPRWKWQAGTRGSEVTYAASYSAVTGQYVVAGATASNYAKERVGMGLRDTRAYPYDSDMASTTLTAFAKPVAKWQDGTARGDRITAVAHAPTGEVYLAGDTSGAFADDAVASLG-ANMVVIKQGADGVELW-RHQNAGIVDTRITCAATDADGNVYVGGYAR--LAATEE---DFYVAKLDAATGAVLWEYKAGTAESDIIQGIAVDAAGNIAVAGYTAGKFGAVNKGLYDFVVVGLSPLGVQQWAWQDGTDQSDRLNAIASDTDAGTFVVAGDTYGTYTAPNAGSWDLIVMKL 1242
            DG+  W+ Q GT  S+  +A +   V G   + G T+ +        GL D     +D +          + + K Q GTA+ D    VA    G V+L GDT GA      A+ G  ++ +IK   +G  LW RH      D      A DADGNVY+ G     LA T     D Y+ K D  +G +LW+ + GT   D + GIA D  GN+ VAG T G  G  + G  D  V+     G   W  Q GT   +     A   D G ++V G T G       G+ D  V++L
Sbjct:   79 DGKELWRRQPGTTESDTPFAITTD-VDGNVYITGVTSGSLGG--ANKGLVDAFLIKFDRN---------GRILWKRQPGTAKYDXGKRVATDANGNVFLVGDTEGALGG---ANKGLVDVFMIKFDRNGRILWNRHMGTSQRDEARAVVA-DADGNVYLAGQTTGALAGTNRGYYDAYIVKFDG-SGRILWKRQLGTTAFDGVDGIAADTDGNVYVAGTTNGALGGASAGGVDAFVIKFESTGDILWKRQLGTAAYETALDAAIGADGGVYIV-GYTIGALGGSPHGNTDGFVIQL 356          
BLAST of jgi.p|Trimin1|353448 vs. uniprot
Match: A0A4Q5ZZ59_9DELT (Uncharacterized protein n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A4Q5ZZ59_9DELT)

HSP 1 Score: 90.9 bits (224), Expect = 7.050e-16
Identity = 119/418 (28.47%), Postives = 167/418 (39.95%), Query Frame = 1
Query:   10 DKLSACAVDAGRGVVYVTGSTWGDFGTPHYKPGTEGSQLMDYYNDFLAMRMDYATGEIVWSYQDQGGKQDEFVTADIEPAFGDLLVAGTTSTPWGCTDATCPYFAESVVTRPDFVAARLALADGQPRWKWQAGTRGSEVTYAASYSAVTGQ--YVVAGATASNYAKERVGMGLRDTRAYPYDSDMASTTLTAFAKPVAKWQDGTARGDRITAVAHAPTGEVYLAGDTSGAFADDAVASLGANMVVIKQGADGVELWRHQNAGIVDTRITCAATDADGNVYVGGYARLAATEE-----DFYVAKLDAATGAVLWEYKAGTAESDIIQGIAVDAAGNIAVAGYTAGKFGAVNKGLYDFVVVGLSPLGVQQWAWQDGTDQSDRLNAIASDTDAGTFVVAGDTYGTYTAPNA-GSWDLIVMK 1239
            D  S+    AG   +Y  G T+  FG   +  G  G   +  Y+         ATG + W  Q  G   DE V        G + VAG TS   G   A    F +++V + D    RL        W WQ G+   E  +A   +A+ G   YVV G   S       G G         +SD   + + A    V   Q GT   D   AV    +G+VY+AG TSG+           ++V++K  A G  LW  Q        +      + G +  GG +     +      DF+ A     TG  L  ++ G+A  +    +  D AG   +AG T G  GAV  G  D V+V L+P G  Q   Q GT   +    IA D   G   VAG+T G +    A G++D  ++K
Sbjct:  486 DHASSAVATAGG--IYAAGETYSSFGGNSHLGG--GDLFLTAYD---------ATGGLRWVRQ-FGSADDELVGGLSADVAGSVYVAGGTSGSLG-GHAPAGLF-DALVVKYDSAGQRL--------WAWQLGS--PEFEFARGVAALPGGGVYVVGGTYGSLDGNVSAGYG---------ESDFFVSRVDAGGARVWTRQLGTPGYDEAVAVTVGASGDVYVAGVTSGSMGSGGPQG-DTDVVLVKFDAAGQLLWSRQVGSSAPDSVVGVIETSAGILVSGGASGAGGGQPSQGGVDFFAALFAPMTGQPLGWWQFGSALDEYPGALVSDGAGGAWLAGSTQGVMGAVRGG-QDIVLVHLTPQGEPQLVRQLGTQDDEHAEGIAVDA-LGRVYVAGETLGAFEGQTASGAFDFFLLK 865          
BLAST of jgi.p|Trimin1|353448 vs. uniprot
Match: A0A836CL24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL24_9STRA)

HSP 1 Score: 1664 bits (4310), Expect = 0.000e+0
Identity = 960/960 (100.00%), Postives = 960/960 (100.00%), Query Frame = 1
Query:    1 MVAPPGCTTGLPAFDLRAANPDHEVKEDLQGVRNAMENWVSSSMAPEGHSKRHLVHMISEGTTLPAVLADFWHAVGSCVDKQRLAPEDRSFRRLHILTAPFCEPLRSYKTMAILDRLLERAAAEGGCQHFMPATDHDGVTVYHNHPRFRNTPPPTVKAYAVRHSPYPSFSLAAHYKAGGGAQARWPLPPAGQEPPLDSMMQQPLRRLAPRPMQPDRSATAGSNSAXXXXXXXXGTPQRSKPEGRRGKKQAPRPDKEWAPRVRVALESAYAKAAVSASDDKVEPRGAAPATSVAVLQATMEWVARVLQEAEDVKETSGYEGTSVSRQLRGAHAHQSALRPDDDACSPPPAHPVRSLARCLQNRGLVSSTVVRRMRSVAAYSVTRSATAEDLFADVWDAVVELTQRAAEAGCAVPQEHEATLDDAGRPPCYSAVVVAPEFDAYCSEGFRRFGEILRSTLDYLPMEDNITIEVFHPEFVTGHDKERDRSAMRRSPWPAIHICFEGARVPDVQESAQRHFTLEVVDELSKIPSAARSCLDSVAAVASPTRLAGDRDAFLHITYQSTDTFYKDEGGRQAHIQEILTTVPVLSQHLETDNNGEVTVRFRIEEVSKNHRSQRFVVMITADTARMRDLPQIEPIKTAPIMVLSKRKDRKRRAEQAGLTWAPTPQAPPAAAAMTAAMQAQQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARRGSLGAAGFALLPQAHLLPNAAAAAXXXXXXXXXLMSAAPALALKREASAQHPEGPYTAADLGPLGARAYQMLSDAEQWHMVGVGVNPETGTPDANNPIVKCHVCEAVCIGLVHMHREGCRLRRLLDDCMSVLEAAVPEGGNTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVVQQALPVPTLPGSHPAWMNDARGGSXXXXXXXXXXXXXXXXXXXRQHGEFSPASGIHAILHAAAD 2880
            MVAPPGCTTGLPAFDLRAANPDHEVKEDLQGVRNAMENWVSSSMAPEGHSKRHLVHMISEGTTLPAVLADFWHAVGSCVDKQRLAPEDRSFRRLHILTAPFCEPLRSYKTMAILDRLLERAAAEGGCQHFMPATDHDGVTVYHNHPRFRNTPPPTVKAYAVRHSPYPSFSLAAHYKAGGGAQARWPLPPAGQEPPLDSMMQQPLRRLAPRPMQPDRSATAGSNSAXXXXXXXXGTPQRSKPEGRRGKKQAPRPDKEWAPRVRVALESAYAKAAVSASDDKVEPRGAAPATSVAVLQATMEWVARVLQEAEDVKETSGYEGTSVSRQLRGAHAHQSALRPDDDACSPPPAHPVRSLARCLQNRGLVSSTVVRRMRSVAAYSVTRSATAEDLFADVWDAVVELTQRAAEAGCAVPQEHEATLDDAGRPPCYSAVVVAPEFDAYCSEGFRRFGEILRSTLDYLPMEDNITIEVFHPEFVTGHDKERDRSAMRRSPWPAIHICFEGARVPDVQESAQRHFTLEVVDELSKIPSAARSCLDSVAAVASPTRLAGDRDAFLHITYQSTDTFYKDEGGRQAHIQEILTTVPVLSQHLETDNNGEVTVRFRIEEVSKNHRSQRFVVMITADTARMRDLPQIEPIKTAPIMVLSKRKDRKRRAEQAGLTWAPTPQAPPAAAAMTAAMQAQQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARRGSLGAAGFALLPQAHLLPNAAAAAXXXXXXXXXLMSAAPALALKREASAQHPEGPYTAADLGPLGARAYQMLSDAEQWHMVGVGVNPETGTPDANNPIVKCHVCEAVCIGLVHMHREGCRLRRLLDDCMSVLEAAVPEGGNTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVVQQALPVPTLPGSHPAWMNDARGGSXXXXXXXXXXXXXXXXXXXRQHGEFSPASGIHAILHAAAD
Sbjct:    1 MVAPPGCTTGLPAFDLRAANPDHEVKEDLQGVRNAMENWVSSSMAPEGHSKRHLVHMISEGTTLPAVLADFWHAVGSCVDKQRLAPEDRSFRRLHILTAPFCEPLRSYKTMAILDRLLERAAAEGGCQHFMPATDHDGVTVYHNHPRFRNTPPPTVKAYAVRHSPYPSFSLAAHYKAGGGAQARWPLPPAGQEPPLDSMMQQPLRRLAPRPMQPDRSATAGSNSAXXXXXXXXGTPQRSKPEGRRGKKQAPRPDKEWAPRVRVALESAYAKAAVSASDDKVEPRGAAPATSVAVLQATMEWVARVLQEAEDVKETSGYEGTSVSRQLRGAHAHQSALRPDDDACSPPPAHPVRSLARCLQNRGLVSSTVVRRMRSVAAYSVTRSATAEDLFADVWDAVVELTQRAAEAGCAVPQEHEATLDDAGRPPCYSAVVVAPEFDAYCSEGFRRFGEILRSTLDYLPMEDNITIEVFHPEFVTGHDKERDRSAMRRSPWPAIHICFEGARVPDVQESAQRHFTLEVVDELSKIPSAARSCLDSVAAVASPTRLAGDRDAFLHITYQSTDTFYKDEGGRQAHIQEILTTVPVLSQHLETDNNGEVTVRFRIEEVSKNHRSQRFVVMITADTARMRDLPQIEPIKTAPIMVLSKRKDRKRRAEQAGLTWAPTPQAPPAAAAMTAAMQAQQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARRGSLGAAGFALLPQAHLLPNAAAAAXXXXXXXXXLMSAAPALALKREASAQHPEGPYTAADLGPLGARAYQMLSDAEQWHMVGVGVNPETGTPDANNPIVKCHVCEAVCIGLVHMHREGCRLRRLLDDCMSVLEAAVPEGGNTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVVQQALPVPTLPGSHPAWMNDARGGSXXXXXXXXXXXXXXXXXXXRQHGEFSPASGIHAILHAAAD 960          
BLAST of jgi.p|Trimin1|353448 vs. uniprot
Match: D7FTV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV7_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 9.460e-29
Identity = 102/313 (32.59%), Postives = 149/313 (47.60%), Query Frame = 1
Query:   46 LRAANPDHEVKEDLQGVRNAMENWVSSSMAPEGHSKRHLVHMISEGTTLPAVLADFWHAVGSCVDKQRLAPEDRSFRRLHILTAPFCEPLRSYKTMAILDRLLERAAAEGGCQHFMPATDHDGVTVYHNHPRFRNTPPPTVKAYAVRHSPYPSFSLAAHYKAGGGAQARWPLPPAGQEPPLDSMMQQPLRRLAP-RPMQPDRSATAG----SNSAXXXXXXXXGTPQ-RSKPEGRRGKKQAPRPDKEWAPRVRVALESAYAKAAVSASDDKVEPRGAA-------------PATSVAVLQATMEWVARVLQEA 927
            L ++ PD    +D   + + M  W    +  + HS R+  +++SEGT+LP V  DFW AV   +D+ R  PE+RSFR++ +  APFCE LR Y+TM    +LL+++A +GGCQ F     H      H HP +R+ P P     A RHSP+P+FS+   Y+ GG                        L+ LA  R    +  A  G    S  A         +P+ R K E  R  +Q     +EWA + R +LE AY  AA    ++     G++             P +SV +LQAT EW+  VL++A
Sbjct:   46 LASSKPD---VKDTTSIISEMNEWTKV-VTFDTHSSRNTKYIVSEGTSLPEVFFDFWKAVSGAIDQHRATPENRSFRKVLMFVAPFCEELRDYETMEHAHQLLQQSACDGGCQDFGTYITHS-----HYHPNYRHRPKPKQSRMASRHSPHPAFSIDVVYRKGG------------------------LKSLASIRDSSEEAEARQGTRVKSTPARTAPLRADPSPEDRKKSEIARKIRQ-----EEWAAKTRSSLEHAYGMAASYGREEAEHGVGSSMWAHQHVLAGRGVPESSVEILQATQEWLTEVLKDA 320          
BLAST of jgi.p|Trimin1|353448 vs. uniprot
Match: A0A6H5KUH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH9_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 5.150e-28
Identity = 65/164 (39.63%), Postives = 97/164 (59.15%), Query Frame = 1
Query:   46 LRAANPDHEVKEDLQGVRNAMENWVSSSMAPEGHSKRHLVHMISEGTTLPAVLADFWHAVGSCVDKQRLAPEDRSFRRLHILTAPFCEPLRSYKTMAILDRLLERAAAEGGCQHFMPATDHDGVTVYHNHPRFRNTPPPTVKAYAVRHSPYPSFSLAAHYKAGG 537
            L ++ PD    +D   + + M+ W    +  + +S R+  +++SEGT+LP VL DFW AV   +D+ R  PE+RSFR++ +  APFCE LR Y+TM    +LL+++A +GGCQ F     H      H HP +R+ P P     A RHSP+P+FS+   Y+ GG
Sbjct:   46 LASSKPD---VKDTTNIISEMKEWTKV-VTFDTYSSRNTKYIVSEGTSLPEVLFDFWKAVSGAIDQHRATPENRSFRKVLMFVAPFCEELRDYETMEHTHQLLQQSACDGGCQDFGTYITHS-----HFHPNYRHRPKPKQSRMASRHSPHPAFSIDVVYRKGG 200          
BLAST of jgi.p|Trimin1|353448 vs. uniprot
Match: A0A6H5KW26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW26_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 8.560e-22
Identity = 60/144 (41.67%), Postives = 86/144 (59.72%), Query Frame = 1
Query: 1090 LVSSTVVRRMRSVAAYSVTRSATAEDLFADVWDAVVELTQRAAEAGCAVPQEHEATLDDAGRPPCYSAVVVAPEFDAYCSEGFRRFG---EILRSTLDYLPMEDNITIEVFHPEFVTGHDKERDRSAMRRSPWPAIHICFEGAR 1512
            L    +V+RM++++ Y VTRS TAE+ ++D W+ V+E+  RAA  GC VP E + T   A   PCY A++V P+   Y S+ F RF    E L   L +LPME +I++E FHPE V+       R    RSP+P +H+C+ G R
Sbjct:  163 LPGKELVKRMKNISQYIVTRSKTAEEAYSDTWEVVMEMADRAASRGCDVPTE-DYTSSSA---PCYGALLVTPDIATYSSDTFLRFQAKVETLNRGLKHLPMEHDISVEAFHPEAVSDASPLDHR--FTRSPYPTLHVCYHGLR 300          
BLAST of jgi.p|Trimin1|353448 vs. uniprot
Match: A0A836CPW2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPW2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.010e-9
Identity = 44/98 (44.90%), Postives = 51/98 (52.04%), Query Frame = 1
Query: 1642 AGDRDAFLHITYQSTDTFYKDEGGRQAHIQ---------------------------------EILTTVPVLSQHLETDNNGEVTVRFRIEEVSKNHR 1836
            A +   +L +  QSTDTFYKDEGGRQAHIQ                                 EIL T+  ++QHLETDN G   +RFRIEEVSKNHR
Sbjct:  542 AAEEVLYLQVVDQSTDTFYKDEGGRQAHIQVDVKITNPKGLDLSRIPLVLQLHYENGYAVQNQEILATI--MAQHLETDNRGGAVIRFRIEEVSKNHR 637          
BLAST of jgi.p|Trimin1|353448 vs. uniprot
Match: D8LJ34_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ34_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 5.160e-7
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 1
Query: 1705 EGGRQAHIQEILTTVPVLSQHLETDNNGEVTVRFRIEEVSKNHRSQRFVVMITADTARMRDLPQIEPIKTAPIMVLSKRKDRKRRAEQ 1968
            E G + H QEIL         L T+ +G   ++F+I EVS+ H+SQRF V I  D     +   + P+ T P+MVLSKRK+R+ +AE+
Sbjct:  213 EAGTEVHSQEILQVQS--DTQLVTNEHGRANLKFKITEVSQRHQSQRFCVKICPDVRLAPEFSNVAPVVTVPVMVLSKRKNRRLKAEK 298          
BLAST of jgi.p|Trimin1|353448 vs. uniprot
Match: A0A7S2Y042_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y042_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.670e-5
Identity = 40/164 (24.39%), Postives = 83/164 (50.61%), Query Frame = 1
Query: 1105 VVRRMRSVAAYSVTRSATAEDLFADVWDAVVELTQRAAEAGC------------AVPQEH---EATLDDAGR-PPCYSAVVVAPEFDAYCSEGFRRFGEILRSTLDYLPMEDNITIEVFHPEFVTGHDKERDRSAM-RRSPWPAIHICFEGARV-PDVQESAQR 1542
            ++  + +++ + V+ +  AE + ++ W AV +L + A    C            +V   H   E  ++D+    PC S +   P F+ + +  F++F   L++ ++ +P E+++ IE+FHPE    H   + R  + RR+P+P +H+   G +  P + E++ R
Sbjct:  205 LLTNLDTISQFIVSSAEGAESVLSEFWQAVDDLNKNAISQSCPPERNLPNQVISSVIASHDLDEDVVEDSHLYRPCVSTLFSTPYFNNFNAVAFQKFARCLKTAVNNIPCEEDVHIEIFHPE----HVARKGRIIVNRRAPYPTLHLYHNGLKTAPTLHETSTR 364          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353448 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIY2_9STRA2.380e-304100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2D5TXS0_9PROT2.380e-2237.27Big_5 domain-containing protein n=1 Tax=Proteobact... [more]
A0A380TGR6_9ZZZZ9.020e-2032.24Uncharacterized protein n=1 Tax=metagenome TaxID=2... [more]
A0A3A0DUK6_9BACT1.170e-1930.05Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7D5RZM5_9PROT9.930e-1930.64SBBP repeat-containing protein n=1 Tax=Defluviicoc... [more]
A0A1Q9F4G3_SYMMI8.520e-1836.00Calmodulin n=2 Tax=Symbiodinium microadriaticum Ta... [more]
A0A532TTN2_9EURY2.840e-1733.64Uncharacterized protein n=1 Tax=Hadesarchaea archa... [more]
A0A1Q7E7G1_9BACT3.440e-1731.72Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A7D5S3X0_9PROT6.250e-1732.09SBBP repeat-containing protein n=1 Tax=Defluviicoc... [more]
A0A4Q5ZZ59_9DELT7.050e-1628.47Uncharacterized protein n=1 Tax=Myxococcaceae bact... [more]

Pages

back to top
BLAST of jgi.p|Trimin1|353448 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A836CL24_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FTV7_ECTSI9.460e-2932.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUH9_9PHAE5.150e-2839.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW26_9PHAE8.560e-2241.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CPW2_9STRA1.010e-944.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LJ34_ECTSI5.160e-740.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2Y042_9STRA1.670e-524.39Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_163contigContig_163:227160..234019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353448|estExt_Genemark1.C_Ctg_1630027
BRITEko00000,ko00001,ko01000,ko01001
KEGG Pathwayko04064,ko04210,ko04217,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05169,map04064,map04210,map04217,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05169
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K16289
EC2.7.11.1
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
Preferred nameRIPK4
Descriptionprotein kinase activity
COG categoryKLT
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota
Evalue2.96e-17
Seed ortholog2880.D8LRF5
Hectar predicted targeting categoryother localisation
TranscriptId353770
TrackFilteredModels1
ProteinId353448
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353448gene_16189Tribonema minus UTEX_B_3156 geneContig_163 227160..234019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353448Trimin1|353448|estExt_Genemark1.C_Ctg_1630027Tribonema minus UTEX_B_3156 polypeptideContig_163 227160..234019 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16189_1exon_16189_1Tribonema minus UTEX_B_3156 exonContig_163 227160..227271 +
exon_16189_2exon_16189_2Tribonema minus UTEX_B_3156 exonContig_163 227543..227628 +
exon_16189_3exon_16189_3Tribonema minus UTEX_B_3156 exonContig_163 228303..228397 +
exon_16189_4exon_16189_4Tribonema minus UTEX_B_3156 exonContig_163 229134..229297 +
exon_16189_5exon_16189_5Tribonema minus UTEX_B_3156 exonContig_163 230087..230198 +
exon_16189_6exon_16189_6Tribonema minus UTEX_B_3156 exonContig_163 230643..230745 +
exon_16189_7exon_16189_7Tribonema minus UTEX_B_3156 exonContig_163 231786..231916 +
exon_16189_8exon_16189_8Tribonema minus UTEX_B_3156 exonContig_163 232448..232541 +
exon_16189_9exon_16189_9Tribonema minus UTEX_B_3156 exonContig_163 233014..233134 +
exon_16189_10exon_16189_10Tribonema minus UTEX_B_3156 exonContig_163 233360..233445 +
exon_16189_11exon_16189_11Tribonema minus UTEX_B_3156 exonContig_163 233870..234019 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16189CDS_16189Tribonema minus UTEX_B_3156 CDSContig_163 227160..227271 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16189 ID=mRNA_16189|Name=jgi.p|Trimin1|353448|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1254bp|location=Sequence derived from alignment at Contig_163:227160..234019+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCAAGATAAGCTGAGCGCATGTGCCGTCGATGCTGGCAGAGGCGT
TGTCTACGTCACCGGGTCAACGTGGGGTGACTTTGGCACACCCCACTACA
AGCCGGGTACCGAGGGCTCGCAGCTGATGGACTACTACAACGACTTCCTG
GCAATGCGCATGGACTATGCGACTGGTGAAATTGTGTGGTCATACCAGGA
CCAAGGTGGCAAGCAAGATGAGTTTGTGACTGCCGACATTGAGCCAGCCT
TTGGGGACCTGCTAGTGGCGGGCACCACCAGCACACCTTGGGGCTGCACG
GACGCGACGTGCCCGTACTTTGCGGAGAGCGTGGTGACGCGGCCCGACTT
TGTGGCCGCGCGCCTCGCGCTCGCGGACGGCCAGCCGCGCTGGAAGTGGC
AGGCGGGGACGCGCGGCAGCGAGGTCACCTACGCCGCCTCCTACAGCGCC
GTCACAGGGCAGTACGTGGTCGCGGGCGCCACCGCTAGCAACTACGCCAA
GGAGCGCGTCGGCATGGGACTGCGCGACACGCGCGCGTACCCCTACGACT
CCGACATGGCCAGCACCACGCTGACCGCATTCGCCAAGCCCGTTGCCAAG
TGGCAAGACGGCACCGCCCGCGGCGACCGCATCACCGCCGTCGCTCACGC
GCCAACGGGCGAAGTGTACCTGGCGGGAGACACTTCCGGCGCCTTTGCTG
ATGACGCTGTGGCGTCCCTGGGCGCCAACATGGTTGTAATCAAGCAGGGC
GCCGACGGCGTTGAGCTGTGGAGGCACCAGAACGCCGGCATCGTCGATAC
GCGGATCACGTGCGCGGCGACCGACGCCGACGGCAACGTCTACGTCGGCG
GATACGCGCGACTTGCCGCGACCGAGGAGGACTTCTATGTGGCCAAGCTG
GACGCCGCGACAGGCGCGGTGCTCTGGGAGTACAAGGCCGGCACGGCCGA
GTCGGACATCATTCAGGGCATCGCCGTCGACGCCGCCGGCAACATTGCCG
TCGCTGGGTACACGGCAGGGAAGTTTGGCGCCGTCAACAAGGGCCTGTAC
GACTTTGTCGTCGTCGGGCTGTCACCGCTGGGAGTACAGCAGTGGGCCTG
GCAGGACGGAACTGATCAGTCAGACCGCCTTAACGCGATTGCTAGCGACA
CGGACGCTGGCACGTTTGTCGTCGCGGGTGACACGTATGGGACATATACG
GCCCCGAACGCCGGCAGCTGGGATCTCATCGTCATGAAGCTCACTGCAGC
ATAG
back to top

protein sequence of jgi.p|Trimin1|353448

>Trimin1|353448|estExt_Genemark1.C_Ctg_1630027 ID=Trimin1|353448|estExt_Genemark1.C_Ctg_1630027|Name=jgi.p|Trimin1|353448|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=418bp
MQQDKLSACAVDAGRGVVYVTGSTWGDFGTPHYKPGTEGSQLMDYYNDFL
AMRMDYATGEIVWSYQDQGGKQDEFVTADIEPAFGDLLVAGTTSTPWGCT
DATCPYFAESVVTRPDFVAARLALADGQPRWKWQAGTRGSEVTYAASYSA
VTGQYVVAGATASNYAKERVGMGLRDTRAYPYDSDMASTTLTAFAKPVAK
WQDGTARGDRITAVAHAPTGEVYLAGDTSGAFADDAVASLGANMVVIKQG
ADGVELWRHQNAGIVDTRITCAATDADGNVYVGGYARLAATEEDFYVAKL
DAATGAVLWEYKAGTAESDIIQGIAVDAAGNIAVAGYTAGKFGAVNKGLY
DFVVVGLSPLGVQQWAWQDGTDQSDRLNAIASDTDAGTFVVAGDTYGTYT
APNAGSWDLIVMKLTAA*
back to top

mRNA from alignment at Contig_163:227160..234019+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16189 ID=mRNA_16189|Name=jgi.p|Trimin1|353448|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6860bp|location=Sequence derived from alignment at Contig_163:227160..234019+ (Tribonema minus UTEX_B_3156 )
ATGCAGCAAGATAAGCTGAGCGCATGTGCCGTCGATGCTGGCAGAGGCGT TGTCTACGTCACCGGGTCAACGTGGGGTGACTTTGGCACACCCCACTACA AGCCGGGTACCGGTGAGCACCAGCTGTGCAGTGCAGCGCACCGTTTGCAG AAGCAGCAGAAGCGGGAGCTGCGCACTTGTACTTGTGGACCTGTGTTGAT GTTATAAAATTCACAAGGCCCCAAGGGACGCCGGGTGTCCTACGCATTCC TACTAGTAGGGTTTACTCCTATGCAGCAGCCTAGTCTGCAACTCGTACGC ACAGCTGTTTGAGCAGCGTCAAACTTCAACAACTCAGCTATCGCGTGGTG TTGCCACCACCCCCTTCTTGCTCTGTATCACAGAGGGCTCGCAGCTGATG GACTACTACAACGACTTCCTGGCAATGCGCATGGACTATGCGACTGGTGA AATTGTGTGGTCATACCAGGTACGCAAAGGTTGTGCTGATATTTACACAG GCCGCACAAAATGAAGACGTGTGCTTTTGGCGCATGGCAAACTTCAAGGT TCGCCGGCACTAAGGCAGTGAACCATCTGACCCACAGAGTTGATGATACA ACGGCTTTTTCATTCGCGCCTAGCTGTGGGCTCATGGTGCAAGTGTGTAG AAGCGCAAGTGCAAGTACTTGTAGTTACGATGGTCGCAACGAGCAATGGG CCCCCTGTGGGCCCTGCGGGTCTCAAGGAAGTTCAGGCGCAAGTACTTGA AGTTGTATGACGAGGTCGTCAGTGCTCATCATGTCACGCCCCCCCTCCTG GACAGATCATCTTGCATTCCACTGCCGAAGCGCCCGCGTCGATCAACGGA GCAGCATGATAACCCTAGCGCGTGCATTGTCTGTGGCGTCTGTTGTCAAA TTGAGAGATGGAACCGCAAAGTGCATCACAATGGATCGCCTTTCAGAAGC GGCTGCTGATAGCATTGTCCCTGCTGCTTCAAAGTAGTTGTGTGTGTGTC GCGCGCTCGCCATGTGCGTGCGCAGCAAGTCACGGCTCAAACAGCATGCC AGTCAAGAGTAACTGACCAGAGCTTTCTTGCACTACATGACCAAGCAAGT TGTGTTGTTTGTGTTGCTCACGCGTGACTCTCTGCTGTTGCAGGACCAAG GTGGCAAGCAAGATGAGTTTGTGACTGCCGACATTGAGCCAGCCTTTGGG GACCTGCTAGTGGCGGGCACCACCAGCACACCTTGGGGGTAGGTGCCACT TGCGTTGTGGTAGTGGTATGAAAGCACTTCATCATGACTTGTTTGGTGCT GCAGTTGACAGACAGCGCGGAATTAGCAGACATCCACTGCTCTGTCCTGC CTGTTTGTGAAGCAATCAAACATATCGCGACGTGCTGCATCTGCATGGTG GGCCAGCAAAGCCCCACCTCCTATCACGCAGGTCCTTTGCCCTGTTCCAA GGTAGCACGTGGCAGATCATACTTCTATACTTGAAGTATACAATAGACGA ACATATACTTGAAGTATACAATAGTGCGCCCGCCCGCATGGTGCCAAGCT GAGCGTCAAGGATCATACCTGCCCTTCACCTGCCCTGCACACCTTCTGTG CGGACACGATTGGACCGCATAAACATGCATGACCGTAGGCGACGGGCACG ACACGATGCTTGACATTTGCACTTTTGGCTGGGGGCTTGCGTGCCTTCGC AGACAGGACAGCCGCAGTGCATTGCCGCCCGCACCCTCGCCTTCCAGCCC CCCCCCCCCCCCCCCCACGCGCACACTGCACACTCACACGCCTGCGCCAG CCAACTTCAACTTTGTAAAGCTACGTCAAGTCATGAATCCTCACACTACA GCCCCTTTCGCCTCCGCCGCGCGCAGCACGCCTGCGCCAGTCAACTTCAA TGTTGCAAAAGCTACTCAAGTCAGGACTCCTCACACTACACTGTGATCCT TGTGCATCCGCCGCGCGCGCGCAGCTGCACGGACGCGACGTGCCCGTACT TTGCGGAGAGCGTGGTGACGCGGCCCGACTTTGTGGCCGCGCGCCTCGCG CTCGCGGACGGCCAGCCGCGCTGGAAGTGGCAGGCGGGGACGCGCGGCAG CGAGGTCACCTACGCCGCCTCCTACAGCGCCGTCACAGGTGCGATGCGTT TGCGCCCTGCTGCTGTGTGATGAGATGGTGATGGCGTAAATGTGCGCTCA GCATGTCGGAGTGTAGCGCGCGCGTCGTCGTTGAAATGCTGCTGCCAGTG CGCGGTGTGCTGGCTGGAAGTGACTGTTTGGGAGCACATGGTGGCGTCAA GCAAACGCTGCGGAGGGTGCCATGCGTCAAAGTGCAGCATGGACTGCTGA TGACCGTATCAGGTGTGCTGTGCTGACCGGCCACGGTGTCTGCTCGGTGC CTGGAGAACGACTTCCCGCTCTTGACTTGCTAAAAGAAGCAGTGGAAGTT TGGTCTTGGGTGCTTGCAGCCATTGTGAGGCTAGTCGCAGTAGGTACAGA GCAAGACACCCGGTCTGGTGCCCTTGCGCGTACGTGGCGCTTTTGCAGAC ACCAACGCATCTACCCCTCACCCTACCCCGAACTACCACAGACTTGACTC AACGCTCAGAAACAACGGCGCGTGCAGTATGGCAGCTGCCAGTACCTCGC CACGCAGTACGCAGCCAGCCGGCGGTGCTCGCAATGCAGTGCTGCGCTGC AGCGCTCGCCTAGGATGATGGCGCACTTGCACCGCGCCGTAGCCAGCAAG AATCGCTCGTGCACCGTGGCAGTTGCCAATCTTTCATCTTGCAGTTCGCA ACCAGCCGCTGGCGCACGCAATGCAGTGCTGCACAGCAGCGCTCATGTGG ATGATGGCGCAGCGCGCCGCAGCATGAGCTTAACACGCCTCACAACGCCG CTCCTTGTGTTTACCAACTGCGCGCAGGGCAGTACGTGGTCGCGGGCGCC ACCGCTAGCAACTACGCCAAGGAGCGCGTCGGCATGGGACTGCGCGACAC GCGCGCGTACCCCTACGACTCCGACATGGCCAGCACCACGTGAGTGCTGT GCACGCGTACGCGCACTCGTGGTGCTCTATGTAGCGTGTGCTGGTCGTGT TGCGTGTGCGGTGGTGCAGGATGTGCCGGCTGTTTGCAGTATTTCCGCAA CAGCAGTGGTGGTAGTAGCACTTGGGCCAGTTTGTGAACGCACGGTATGG CAGTGGAAGTGATGGATGCACCTTGAGCCGGCTCCGCCGGGCATGAGTAT GGCAAAGTCAAAGAAATATCTACCTATGCGTCAGCCAGCACACTGCCTCC GTAGTGCCGCCGGCATTCTCAATGCGCCACTCTGCTGTCAAATTGTCGCA CTCTGTTCGAGGCACCAATGTTGATGTTGTGCTCCACGCTATTGGTATCG ATCTGCGAAGGCGATGCACAACGACCTTTGCGCTCCAGACTCCAACATTC CTCCATTGCTGCGCGCGTACCGTCCACCTGCAGGCTGACCGCATTCGCCA AGCCCGTTGCCAAGTGGCAAGACGGCACCGCCCGCGGCGACCGCATCACC GCCGTCGCTCACGCGCCAACGGGCGAAGTGTACCTGGTGAGATTTGCTAA AAACGGTAACGGCCGCTGTGTCTTCTCCTGAGACCTGTGTGCATGTATTA GTCGAACGGTGCTGCTGCATCTAGACTGAGATACCGGCACTCATGTGTAC TCCGACATTTTGTCTGGTCATCTGGGCAAGGTGTGATCGCAGAAATTGAG GCTGTTTCAACGCCACCTGTTAGTCGAGTGTCGTGGTGACGGTGTGGTGT AACTGCTTGCATGTTGCCTGCATTCTTGCTCATCCAACGCTGCCTGACGA GGCATATGCTGACAGCACCAGCGCAACTGGTCTGGCTGTATGCTCAACTT GAAATTCTAGGACCTACTAGTAGCGTGTTTGTACAAGATGGCCCAGGTGC TCAGAGCAAATGGGCATCTTGCGTGTACTCTCATTTGCGTGTGCCCAGAG CAGCGTTACAATCATGGCTCACCGTTTTCACGAGGCTCAAAGCACAAGCG GTACTACATATGGTGCCTCTCGGGTGCAGATATGGGGGTGCGCTTGATGC TGTGTGGTGTTTGCTGCACCCAGTGACGAAGCGTACTTGGTGTACGAGGA TGTTCCGTGCGCAATGCGCTCGTTGTACCGTACGAAGCGCAGCGTATCGA GTGCAGCAATGCGTACGCAATGCACAGCAAAGCACGATTGGTGAACTGCA CTGACCCTGGCAGTTGCTTTGTGCACGCGCCCTTGAAGCACCATTCCAGG CGCACGTGTGCAGAACGTCGCCCTCCTCCACTCCTCCACGCAAACCGCAC AACGCTTGCGCGAAGCAGCCCCCAACCCCACCTCTAACACAAGTTATAAC CCTCGGCTGGCGGCCATCATGCTATGAGCTCAAGCCCCGTACACCGCTTT GGTCGTGTGCGGTGTAGTGGAACCGCTTGCGCAGTCGTAACGCATCACAA CCTTGCGCCACCTCGTCGTGATGCACGGCAGGCCAATGACACTGGCGCGT GTCGGCTGTGACTCGTATGCTGCACATCAGGACGCACACCAGCACAACTC ACCTGCTCTGTGCCACCGCCATGCAGGCGGGAGACACTTCCGGCGCCTTT GCTGATGACGCTGTGGCGTCCCTGGGCGCCAACATGGTTGTAATCAAGCA GGGCGCCGACGGCGTTGAGCTGTGGAGGCACCAGAACGCCGGCATCGTCG ATACGCGGTGCGCAGCCGCTGCCTCACTGTGCTCAATGGCTTGTCTGTTG CAAGTGCTCACTGCTGAAGCATGTGCTTCGCGCAGTGCAACATTTCGGAG TACATGTTGCGTGCAGCACAATATCTAAACGGCGCATGTCCAGCATTGAC TACTGAATGCAGAAGTACGGTGTGCGCTCTGTGACTCGTTATCAGGGCGC GACCGCATGCGCGCTGTTGAAGTGCAGCGAGCGCTGCGTACTCTGAGTCT CAACAGCTTCGTCAAGTCTCCTGTGAGCCAGCGATTCAAGTTGACAACAG AGCATGGGGCACTGGCTTTATGCCGCATGCATGTGACGGGCAGCAACAAC CTTGATCATTCGGCACTGACAGCATGAATTTGGGCCAGCGGCCATTATGG CAACACTCAGGGAGCACGGCACAAGCGCATCTGGTCAATGCCAGTTTTTC CTAGCAGTGTGCTCAATGTCTGTTTTGGAATCTAGTCACCAGTGCTCATC TCATCAGCTCTTTGCCGTTGCTCGCTGCCGCTGTTCAGGATCACGTGCGC GGCGACCGACGCCGACGGCAACGTCTACGTCGGCGGATACGCGCGACTTG CCGCGACCGAGGAGGACTTCTATGTGGCCAAGGTACTAACACTCACTCCA CAACATCATTAACGACATATGCAGTGAGGAAGTTCTCCTTGTGGCAGTGT TCAGAGTGTGAGGCTCTGACAAGCGCGCTGAGGGGGGGAGGCGTCTGCGT GTGCACCGACGCCACAATGGCGTGCCCGGCGCCCGGCAAACGTTCGCTCT GATTGGTCGCAAGCTGCCGTTGTTTGCCATATGCACGGCTCAGCGGCGTG TGCTGCATCAGTCTTGCTCGTGCAGTTCTGGTTGCCCGCATCACTTGACT AGAGTGCAAAGGTTGTGATTATTGCAGCGCTGCGACAGCGCATTGTTGCC TCAGCCATCCGGCACTCCCTACCATGCACCTTCATCAAGCGTGATCATCC CTGCTCATCGTATGACCTGCTTTGAACAAAAAGCTTTCGCCTGCGGCGCG ACACCTTTCACTGAGCACTGTCATCCTTGGGTGCCTGTTCTGCTCGCTGC ACAGCTGGACGCCGCGACAGGCGCGGTGCTCTGGGAGTACAAGGCCGGCA CGGCCGAGTCGGACATCATTCAGGGCATCGCCGTCGACGCCGCCGGCAAC ATTGCCGTCGCTGGGTACACGGCAGGTGAGCTACAGTAGCACATTGTCAC GGGCACGTCACATGCTACAATTGGGGCATCAATACCGAATAGGCAATGCC ATTAGACATGCATCCGCGGCGCCGTGTGAGAACACGGCCAGCGCACTGGG CTACCGTGCTGCTGGGGGCAACTCAAGTAAACTGTTCGTGCGCTTTCGTG CATGTCGTAACCGACACTGATTCACGCCTGCTGACTGTCTTGCATTGCAG GGAAGTTTGGCGCCGTCAACAAGGGCCTGTACGACTTTGTCGTCGTCGGG CTGTCACCGCTGGGAGTACAGCAGTGGGCCTGGCAGGTGAGGTCTCGCCC CGCTGCTCAGCAAAATTGCCTGCCACTTGTGACTGCCGTGAGGTGCTGTG TGCTTGCGTGCTTGCAGCTGCAGAAAGCACTCTGTGGAGGCATGTGACTG CGCATTTAAAAGAAGCGGCTGCCTGAGTCGCACAACTTTCGACAGCACCT TGTGTTGATTGCAGCCACAACCATAATGCAGCACAGAACAAGACGTGTCG CTGATGCATATCATGCCTTTTGTTCTACCACTTTGATGTGATCCATCGTG ATGCGCCTTCGCGCATCGGCACACGTTTTCGGCGATGGCTGCAGGCTCTT GGCCTATACAACCTGGACCTGCAACGTCACCCTACACAATACTGTATTTT TTCATACTAATTGACATGTACGTATGTATGTGCACTGTCGTCATACCTAC CTACGTGCAGGACGGAACTGATCAGTCAGACCGCCTTAACGCGATTGCTA GCGACACGGACGCTGGCACGTTTGTCGTCGCGGGTGACACGTATGGGACA TATACGGCCCCGAACGCCGGCAGCTGGGATCTCATCGTCATGAAGCTCAC TGCAGCATAG
back to top

Coding sequence (CDS) from alignment at Contig_163:227160..234019+

>mRNA_16189 ID=mRNA_16189|Name=jgi.p|Trimin1|353448|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1254bp|location=Sequence derived from alignment at Contig_163:227160..234019+ (Tribonema minus UTEX_B_3156 )
ATGCAGCAAGATAAGCTGAGCGCATGTGCCGTCGATGCTGGCAGAGGCGT
TGTCTACGTCACCGGGTCAACGTGGGGTGACTTTGGCACACCCCACTACA
AGCCGGGTACCGAGGGCTCGCAGCTGATGGACTACTACAACGACTTCCTG
GCAATGCGCATGGACTATGCGACTGGTGAAATTGTGTGGTCATACCAGGA
CCAAGGTGGCAAGCAAGATGAGTTTGTGACTGCCGACATTGAGCCAGCCT
TTGGGGACCTGCTAGTGGCGGGCACCACCAGCACACCTTGGGGCTGCACG
GACGCGACGTGCCCGTACTTTGCGGAGAGCGTGGTGACGCGGCCCGACTT
TGTGGCCGCGCGCCTCGCGCTCGCGGACGGCCAGCCGCGCTGGAAGTGGC
AGGCGGGGACGCGCGGCAGCGAGGTCACCTACGCCGCCTCCTACAGCGCC
GTCACAGGGCAGTACGTGGTCGCGGGCGCCACCGCTAGCAACTACGCCAA
GGAGCGCGTCGGCATGGGACTGCGCGACACGCGCGCGTACCCCTACGACT
CCGACATGGCCAGCACCACGCTGACCGCATTCGCCAAGCCCGTTGCCAAG
TGGCAAGACGGCACCGCCCGCGGCGACCGCATCACCGCCGTCGCTCACGC
GCCAACGGGCGAAGTGTACCTGGCGGGAGACACTTCCGGCGCCTTTGCTG
ATGACGCTGTGGCGTCCCTGGGCGCCAACATGGTTGTAATCAAGCAGGGC
GCCGACGGCGTTGAGCTGTGGAGGCACCAGAACGCCGGCATCGTCGATAC
GCGGATCACGTGCGCGGCGACCGACGCCGACGGCAACGTCTACGTCGGCG
GATACGCGCGACTTGCCGCGACCGAGGAGGACTTCTATGTGGCCAAGCTG
GACGCCGCGACAGGCGCGGTGCTCTGGGAGTACAAGGCCGGCACGGCCGA
GTCGGACATCATTCAGGGCATCGCCGTCGACGCCGCCGGCAACATTGCCG
TCGCTGGGTACACGGCAGGGAAGTTTGGCGCCGTCAACAAGGGCCTGTAC
GACTTTGTCGTCGTCGGGCTGTCACCGCTGGGAGTACAGCAGTGGGCCTG
GCAGGACGGAACTGATCAGTCAGACCGCCTTAACGCGATTGCTAGCGACA
CGGACGCTGGCACGTTTGTCGTCGCGGGTGACACGTATGGGACATATACG
GCCCCGAACGCCGGCAGCTGGGATCTCATCGTCATGAAGCTCACTGCAGC
ATAG
back to top