mRNA_13126 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177902
Unique NamemRNA_13126
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|177902 vs. uniprot
Match: A0A835ZA00_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA00_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.470e-31
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:    1 MKAGNASLVGARSKKRVKFRKRTCAGVDEGGAKCMKQSTFGMPGGKVATHCAAHKTPAMVDV 186
            MKAGNASLVGARSKKRVKFRKRTCAGVDEGGAKCMKQSTFGMPGGKVATHCAAHKTPAMVDV
Sbjct:    1 MKAGNASLVGARSKKRVKFRKRTCAGVDEGGAKCMKQSTFGMPGGKVATHCAAHKTPAMVDV 62
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BLAST of jgi.p|Trimin1|177902 vs. uniprot
Match: A0A835ZG73_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG73_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 4.060e-19
Identity = 48/61 (78.69%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    1 MKAGNASLVGARSKKRVKFRKRTCAGVDEGGAKCMKQSTFGMPGGKVATHCAAHKTPAMVD 183
            MKAGNA LVGARSKKRV  R R C GVDEGG +C K+ TFGMPG KVATHCAAHKTP MVD
Sbjct:    1 MKAGNAILVGARSKKRVGVRDRKCVGVDEGGTQCTKRPTFGMPGVKVATHCAAHKTPGMVD 61
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BLAST of jgi.p|Trimin1|177902 vs. uniprot
Match: A0A836CJG9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJG9_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 8.160e-18
Identity = 45/61 (73.77%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 MKAGNASLVGARSKKRVKFRKRTCAGVDEGGAKCMKQSTFGMPGGKVATHCAAHKTPAMVD 183
            MK   A LVGAR+K+RV  R +TCAGVDEGGAKC    TFGMPGGKVA HCAAHKTP MVD
Sbjct:    1 MKGDTAILVGARNKQRVGVRNKTCAGVDEGGAKCTTLPTFGMPGGKVAMHCAAHKTPGMVD 61
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BLAST of jgi.p|Trimin1|177902 vs. uniprot
Match: A0A835ZAZ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAZ1_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.560e-16
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 MKAGNASLVGARSKKRVKFRKRTCAGVDEGGAKCMKQSTFGMPGGKVATHCAAHKTPAMVD 183
            ++A NA LVGARSKKRV  R + CAGVDEGG +C K  +FG+ GGK ATHCAAHKTP MVD
Sbjct:    8 IEANNAILVGARSKKRVGVRYKKCAGVDEGGTQCTKWPSFGVLGGKAATHCAAHKTPGMVD 68
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BLAST of jgi.p|Trimin1|177902 vs. uniprot
Match: A0A835ZA10_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA10_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 5.470e-13
Identity = 40/62 (64.52%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 MKAGNASLVGARSKKRVKFRKRTCAGVDEGGAKCMKQSTFGMPGGKVATHCAAHKTPAMVDV 186
            MK  NA  VGAR+KK         AGVDEGG +C K   FG+PGGKVATHCAAHKTP MVDV
Sbjct:   21 MKEDNAIFVGARNKKXXXXXXXXXAGVDEGGTQCTKVPYFGVPGGKVATHCAAHKTPGMVDV 82
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BLAST of jgi.p|Trimin1|177902 vs. uniprot
Match: A0A835YU96_9STRA (EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU96_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.300e-8
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   49 VKFRKRTCAGVDEGGAKCMKQSTFGMPGGKVATHCAAHKTPAM 177
            V    + C GVDEGGAKC ++ TFG+PGGK  THCAAHKTP M
Sbjct:    2 VNVTSKKCIGVDEGGAKCTRRPTFGVPGGKADTHCAAHKTPDM 44
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BLAST of jgi.p|Trimin1|177902 vs. uniprot
Match: A0A835YHI1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHI1_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.160e-7
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   49 VKFRKRTCAGVDEGGAKCMKQSTFGMPGGKVATHCAAHKTPAM 177
            V  + + C GVDEGG +C +Q TFG+PGGK  THCAAHK+P M
Sbjct:    2 VDVKTKKCVGVDEGGVQCSRQPTFGVPGGKAPTHCAAHKSPGM 44
[Close]
BLAST of jgi.p|Trimin1|177902 vs. uniprot
Match: A0A835Z7B4_9STRA (EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7B4_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.940e-5
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   70 CAGVDEGGAKCMKQSTFGMPGGKVATHCAAHKTPAMVDV 186
            CAG DE G +C K  +FG+ GGK  THCAAHKTP MVDV
Sbjct:    2 CAGADERGTQCTKWPSFGVLGGK-PTHCAAHKTPGMVDV 39
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177902 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A835ZA00_9STRA1.470e-31100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZG73_9STRA4.060e-1978.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJG9_9STRA8.160e-1873.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZAZ1_9STRA5.560e-1668.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZA10_9STRA5.470e-1364.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YU96_9STRA1.300e-865.12EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
A0A835YHI1_9STRA1.160e-760.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7B4_9STRA2.940e-566.67EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_161contigContig_161:188716..189450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177902|e_gw1.161.93.1
Hectar predicted targeting categoryother localisation
TranscriptId178224
TrackFilteredModels1
ProteinId177902
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177902gene_13126Tribonema minus UTEX_B_3156 geneContig_161 188716..189450 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13126_1exon_13126_1Tribonema minus UTEX_B_3156 exonContig_161 188716..189450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13126CDS_13126Tribonema minus UTEX_B_3156 CDSContig_161 188716..189450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177902Trimin1|177902|e_gw1.161.93.1Tribonema minus UTEX_B_3156 polypeptideContig_161 188716..189450 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13126 ID=mRNA_13126|Name=jgi.p|Trimin1|177902|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=735bp|location=Sequence derived from alignment at Contig_161:188716..189450+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCGGGCAACGCAAGTCTCGTCGGCGCCAGAAGCAAGAAGCGCGT
CAAATTCAGAAAGAGGACGTGCGCCGGTGTGGACGAGGGGGGCGCCAAGT
GCATGAAACAGTCGACCTTCGGCATGCCCGGGGGTAAGGTCGCCACGCAC
TGCGCTGCGCATAAGACGCCGGCCATGGTCGACGTCAGAAATAAGAAGTG
TGTCGGTGTGGACGAGGGGGGCGCCAAGTGCATGAGGCAGCCAACCTTCG
GCGCGCCCGGGGCTAAGGCCCGCACGCACTGCGCTGCGCACATGATGCCG
GGCATGGTGGACGTCAAAAACAAGCGATGCGCTGGTGTGGACGAGGGGGC
CGCAAAGTGCAAGAAGATGGCGACCTTCGGCAAGCCCGGGGATGAGGCCG
CCACGTACTGCGCCGTGCACAAGACGCCAGGCATGGTTGACGTCAGGTAC
AGGAAGTGCGCCGGCGTCGATGAGGGCATCCGGTGCACAAGGCTGCCGGG
GTTTGGTGTGCCGGGGGCTAAGGTCGCCACGCACTGCGCCGCGCACAAGA
CGCCGCGCATGGTCGACGTCAAGAACAAGCGGTGTGCCGGTGCGGACGAG
GGGGGCGTCAAGTGCACGAGGTGGCCGAGCTTTGGCGTGCTGGGGGGTAA
GGCCCGCACGCACTGTGCTGCGCACAAAACGCCGGACATGGTCAACGTGA
GACGCAGGCAGCTTGCAAGGCGTGAAGGACACTAA
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protein sequence of jgi.p|Trimin1|177902

>Trimin1|177902|e_gw1.161.93.1 ID=Trimin1|177902|e_gw1.161.93.1|Name=jgi.p|Trimin1|177902|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=245bp
MKAGNASLVGARSKKRVKFRKRTCAGVDEGGAKCMKQSTFGMPGGKVATH
CAAHKTPAMVDVRNKKCVGVDEGGAKCMRQPTFGAPGAKARTHCAAHMMP
GMVDVKNKRCAGVDEGAAKCKKMATFGKPGDEAATYCAVHKTPGMVDVRY
RKCAGVDEGIRCTRLPGFGVPGAKVATHCAAHKTPRMVDVKNKRCAGADE
GGVKCTRWPSFGVLGGKARTHCAAHKTPDMVNVRRRQLARREGH*
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mRNA from alignment at Contig_161:188716..189450+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13126 ID=mRNA_13126|Name=jgi.p|Trimin1|177902|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=735bp|location=Sequence derived from alignment at Contig_161:188716..189450+ (Tribonema minus UTEX_B_3156 )
ATGAAGGCGGGCAACGCAAGTCTCGTCGGCGCCAGAAGCAAGAAGCGCGT
CAAATTCAGAAAGAGGACGTGCGCCGGTGTGGACGAGGGGGGCGCCAAGT
GCATGAAACAGTCGACCTTCGGCATGCCCGGGGGTAAGGTCGCCACGCAC
TGCGCTGCGCATAAGACGCCGGCCATGGTCGACGTCAGAAATAAGAAGTG
TGTCGGTGTGGACGAGGGGGGCGCCAAGTGCATGAGGCAGCCAACCTTCG
GCGCGCCCGGGGCTAAGGCCCGCACGCACTGCGCTGCGCACATGATGCCG
GGCATGGTGGACGTCAAAAACAAGCGATGCGCTGGTGTGGACGAGGGGGC
CGCAAAGTGCAAGAAGATGGCGACCTTCGGCAAGCCCGGGGATGAGGCCG
CCACGTACTGCGCCGTGCACAAGACGCCAGGCATGGTTGACGTCAGGTAC
AGGAAGTGCGCCGGCGTCGATGAGGGCATCCGGTGCACAAGGCTGCCGGG
GTTTGGTGTGCCGGGGGCTAAGGTCGCCACGCACTGCGCCGCGCACAAGA
CGCCGCGCATGGTCGACGTCAAGAACAAGCGGTGTGCCGGTGCGGACGAG
GGGGGCGTCAAGTGCACGAGGTGGCCGAGCTTTGGCGTGCTGGGGGGTAA
GGCCCGCACGCACTGTGCTGCGCACAAAACGCCGGACATGGTCAACGTGA
GACGCAGGCAGCTTGCAAGGCGTGAAGGACACTAA
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Coding sequence (CDS) from alignment at Contig_161:188716..189450+

>mRNA_13126 ID=mRNA_13126|Name=jgi.p|Trimin1|177902|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=735bp|location=Sequence derived from alignment at Contig_161:188716..189450+ (Tribonema minus UTEX_B_3156 )
ATGAAGGCGGGCAACGCAAGTCTCGTCGGCGCCAGAAGCAAGAAGCGCGT
CAAATTCAGAAAGAGGACGTGCGCCGGTGTGGACGAGGGGGGCGCCAAGT
GCATGAAACAGTCGACCTTCGGCATGCCCGGGGGTAAGGTCGCCACGCAC
TGCGCTGCGCATAAGACGCCGGCCATGGTCGACGTCAGAAATAAGAAGTG
TGTCGGTGTGGACGAGGGGGGCGCCAAGTGCATGAGGCAGCCAACCTTCG
GCGCGCCCGGGGCTAAGGCCCGCACGCACTGCGCTGCGCACATGATGCCG
GGCATGGTGGACGTCAAAAACAAGCGATGCGCTGGTGTGGACGAGGGGGC
CGCAAAGTGCAAGAAGATGGCGACCTTCGGCAAGCCCGGGGATGAGGCCG
CCACGTACTGCGCCGTGCACAAGACGCCAGGCATGGTTGACGTCAGGTAC
AGGAAGTGCGCCGGCGTCGATGAGGGCATCCGGTGCACAAGGCTGCCGGG
GTTTGGTGTGCCGGGGGCTAAGGTCGCCACGCACTGCGCCGCGCACAAGA
CGCCGCGCATGGTCGACGTCAAGAACAAGCGGTGTGCCGGTGCGGACGAG
GGGGGCGTCAAGTGCACGAGGTGGCCGAGCTTTGGCGTGCTGGGGGGTAA
GGCCCGCACGCACTGTGCTGCGCACAAAACGCCGGACATGGTCAACGTGA
GACGCAGGCAGCTTGCAAGGCGTGAAGGACACTAA
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