mRNA_16092 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353382
Unique NamemRNA_16092
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|353382 vs. uniprot
Match: A0A836CJ15_9STRA (Natural killer enhancing factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ15_9STRA)

HSP 1 Score: 490 bits (1262), Expect = 6.790e-173
Identity = 265/267 (99.25%), Postives = 265/267 (99.25%), Query Frame = 1 
Query:    1 MATVGKAAPDFTADALMPDKTFKKASDQFDQDAQNVLVSLKDYKGKYLVLFFWPLDHTFVCPTEIIQFSEAYEEFKKVDCELVGCSTDSEYCHLSWVEKPRKEGGIGAVNMPILADRALKVSKADRVLKVSQDYGVLIEGEGIALRGLFIISDKGVVRHITINDLPVGRNAEEALRLVQAFQYTDKHGEVCPAGWKPGEKSMKADPTGSKEYFAGVEEAPAAXXXXXXXXXXXKKGAKAAPAKPEXXXXXXXXAADAKEPGRKKRKA 801
            MATVGKAAPDFTADALMPDKTFKKASDQFDQDAQNVLVSLKDYKGKYLVLFFWPLDHTFVCPTEIIQFSEAYEEFKKVDCELVGCSTDSEYCHLSWVEKPRKEGGIGAVNMPILADRALKVSKADRVLKVSQDYGVLIEGEGIALRGLFIISDKGVVRHITINDLPVGRNAEEALRLVQAFQYTDKHGEVCPAGWKPGEKSMKADPTGSKEYFAGVEEAPAAXXXXXXXXXXXKKGAKAAPAKPE XXXXXX AADAKEPGRKKRKA
Sbjct:    1 MATVGKAAPDFTADALMPDKTFKKASDQFDQDAQNVLVSLKDYKGKYLVLFFWPLDHTFVCPTEIIQFSEAYEEFKKVDCELVGCSTDSEYCHLSWVEKPRKEGGIGAVNMPILADRALKVSKADRVLKVSQDYGVLIEGEGIALRGLFIISDKGVVRHITINDLPVGRNAEEALRLVQAFQYTDKHGEVCPAGWKPGEKSMKADPTGSKEYFAGVEEAPAAXXXXXXXXXXXKKGAKAAPAKPEKXXXXXXAAADAKEPGRKKRKA 267
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BLAST of jgi.p|Trimin1|353382 vs. uniprot
Match: O93241_CYPCA (Natural killer cell enhancing factor n=4 Tax=Cyprinoidei TaxID=30727 RepID=O93241_CYPCA)

HSP 1 Score: 266 bits (679), Expect = 2.180e-85
Identity = 127/213 (59.62%), Postives = 160/213 (75.12%), Query Frame = 1 
Query:    4 ATVGKAAPDFTADALMPDKTFKKASDQFDQDAQNVLVSLKDYKGKYLVLFFWPLDHTFVCPTEIIQFSEAYEEFKKVDCELVGCSTDSEYCHLSWVEKPRKEGGIGAVNMPILADRALKVSKADRVLKVSQDYGVLIEGEGIALRGLFIISDKGVVRHITINDLPVGRNAEEALRLVQAFQYTDKHGEVCPAGWKPGEKSMKADPTGSKEYFA 642
            A +GK APDFTA A+MPD  FK              +SL +YKGKY+VLFF+PLD TFVCPTEII FS+A EEF+K++CE++G S DS +CHL+W+  PRK+GG+G +N+P++AD          +  +SQDYGVL E EGIA RGLFII DKG++R ITINDLPVGR+ +E LRLVQAFQ+TDKHGEVCPAGWKPG+ ++K D   SK+YF+
Sbjct:    6 AHIGKPAPDFTAKAVMPDGQFKD-------------LSLSEYKGKYVVLFFYPLDFTFVCPTEIIAFSDAVEEFRKINCEVIGASVDSHFCHLAWINTPRKQGGLGHMNVPLVADS---------LRSISQDYGVLKEDEGIAYRGLFIIDDKGILRQITINDLPVGRSIDETLRLVQAFQFTDKHGEVCPAGWKPGKDTIKPDVQQSKDYFS 196
[Close]
BLAST of jgi.p|Trimin1|353382 vs. uniprot
Match: A0A8B9LKW5_ASTMX (Peroxiredoxin-1 n=3 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9LKW5_ASTMX)

HSP 1 Score: 261 bits (668), Expect = 7.430e-83
Identity = 125/213 (58.69%), Postives = 157/213 (73.71%), Query Frame = 1 
Query:    4 ATVGKAAPDFTADALMPDKTFKKASDQFDQDAQNVLVSLKDYKGKYLVLFFWPLDHTFVCPTEIIQFSEAYEEFKKVDCELVGCSTDSEYCHLSWVEKPRKEGGIGAVNMPILADRALKVSKADRVLKVSQDYGVLIEGEGIALRGLFIISDKGVVRHITINDLPVGRNAEEALRLVQAFQYTDKHGEVCPAGWKPGEKSMKADPTGSKEYFA 642
            A +G  APDFTA A+MPD  FK              + L DY+GKY+VLFF+PLD TFVCPTEII FS+A EEF+K+DCE++G S DS +CHL+W+  PRK+GG+G +N+P++AD          +  +S+DYGVL E EGIA RGLFII DKG +R ITINDLPVGR+ +E LRLVQAFQYTDKHGEVCPAGWKPG+ ++K D   SK++F+
Sbjct:   66 AKIGHLAPDFTAKAVMPDGQFKD-------------LKLSDYRGKYVVLFFYPLDFTFVCPTEIIAFSDAAEEFRKIDCEVIGASVDSHFCHLAWINTPRKQGGLGHMNVPLVADT---------LRTISRDYGVLKEDEGIAFRGLFIIDDKGTLRQITINDLPVGRSIDETLRLVQAFQYTDKHGEVCPAGWKPGKDTIKPDVQKSKDFFS 256
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BLAST of jgi.p|Trimin1|353382 vs. uniprot
Match: A0A0E9X1E4_ANGAN (Thioredoxin domain-containing protein n=2 Tax=Teleostei TaxID=32443 RepID=A0A0E9X1E4_ANGAN)

HSP 1 Score: 259 bits (662), Expect = 7.840e-83
Identity = 122/213 (57.28%), Postives = 156/213 (73.24%), Query Frame = 1 
Query:    4 ATVGKAAPDFTADALMPDKTFKKASDQFDQDAQNVLVSLKDYKGKYLVLFFWPLDHTFVCPTEIIQFSEAYEEFKKVDCELVGCSTDSEYCHLSWVEKPRKEGGIGAVNMPILADRALKVSKADRVLKVSQDYGVLIEGEGIALRGLFIISDKGVVRHITINDLPVGRNAEEALRLVQAFQYTDKHGEVCPAGWKPGEKSMKADPTGSKEYFA 642
            A +GK APDF A A+MPD  FK+             + + DY+GKY+V FF+P+D TFVCPTEII FS+A EEF+K+DCE++G S DS +CHL+W+ KPRK+GG+G + +P++AD    +SKA         YGVL E EG++ RGLFII DKG++R ITINDLPVGR+ EE LRLVQAFQ+TDKHGEVCPAGWKPG  ++K D   SKE+F+
Sbjct:    6 ARIGKLAPDFKATAVMPDGQFKE-------------LKISDYRGKYVVFFFYPMDFTFVCPTEIIAFSDAAEEFRKIDCEVIGASVDSHFCHLAWINKPRKQGGLGPMKIPLVADALHSISKA---------YGVLKEDEGLSYRGLFIIDDKGILRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKEFFS 196
[Close]
BLAST of jgi.p|Trimin1|353382 vs. uniprot
Match: W5MFV2_LEPOC (Peroxiredoxin-1 n=37 Tax=Actinopteri TaxID=186623 RepID=W5MFV2_LEPOC)

HSP 1 Score: 259 bits (662), Expect = 9.600e-83
Identity = 123/213 (57.75%), Postives = 155/213 (72.77%), Query Frame = 1 
Query:    4 ATVGKAAPDFTADALMPDKTFKKASDQFDQDAQNVLVSLKDYKGKYLVLFFWPLDHTFVCPTEIIQFSEAYEEFKKVDCELVGCSTDSEYCHLSWVEKPRKEGGIGAVNMPILADRALKVSKADRVLKVSQDYGVLIEGEGIALRGLFIISDKGVVRHITINDLPVGRNAEEALRLVQAFQYTDKHGEVCPAGWKPGEKSMKADPTGSKEYFA 642
            A +GK APDF A A+MPD  FK+             + L DY+GKY+V FF+PLD TFVCPTEII FS++ EEFKK++CE++G S DS +CHL+W+  PRK+GG+G + +P++AD    +SK         DYGVL E EGIA RGLFII DKG++R ITINDLPVGR+ +E LRLVQAFQ+TDKHGEVCPAGWKPG  ++K D   SK++FA
Sbjct:   11 ARIGKPAPDFQATAVMPDGQFKE-------------IKLSDYRGKYVVFFFYPLDFTFVCPTEIIAFSDSAEEFKKINCEVIGASVDSHFCHLAWINTPRKQGGLGHMKIPLVADTLRSISK---------DYGVLKEDEGIAFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKDFFA 201
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BLAST of jgi.p|Trimin1|353382 vs. uniprot
Match: Q5BJJ3_DANRE (Zgc:110343 n=11 Tax=Clupeocephala TaxID=186625 RepID=Q5BJJ3_DANRE)

HSP 1 Score: 259 bits (661), Expect = 1.150e-82
Identity = 125/213 (58.69%), Postives = 156/213 (73.24%), Query Frame = 1 
Query:    4 ATVGKAAPDFTADALMPDKTFKKASDQFDQDAQNVLVSLKDYKGKYLVLFFWPLDHTFVCPTEIIQFSEAYEEFKKVDCELVGCSTDSEYCHLSWVEKPRKEGGIGAVNMPILADRALKVSKADRVLKVSQDYGVLIEGEGIALRGLFIISDKGVVRHITINDLPVGRNAEEALRLVQAFQYTDKHGEVCPAGWKPGEKSMKADPTGSKEYFA 642
            A +GK APDFTA A+MPD  F               V L DYKGKY+VLFF+PLD TFVCPTEII FS+A E F+K++CE++G S DS +CHL+W + PRK+GG+G +N+P++AD    +SK         DYGVL E EGIA RGLFII DKG++R ITINDLPVGR+ +E LRLVQAFQ+TDKHGEVCPAGWKPG+ ++K D   SK++F+
Sbjct:    6 AHIGKPAPDFTAKAVMPDGQFGD-------------VRLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDAAEGFRKINCEIIGASVDSHFCHLAWTKTPRKQGGLGPMNVPLVADTLRSISK---------DYGVLKEDEGIAYRGLFIIDDKGILRQITINDLPVGRSIDETLRLVQAFQFTDKHGEVCPAGWKPGKDTIKPDVNQSKDFFS 196
[Close]
BLAST of jgi.p|Trimin1|353382 vs. uniprot
Match: A0A8C9TI16_SCLFO (Peroxiredoxin-1 n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9TI16_SCLFO)

HSP 1 Score: 258 bits (660), Expect = 1.800e-82
Identity = 122/217 (56.22%), Postives = 157/217 (72.35%), Query Frame = 1 
Query:    4 ATVGKAAPDFTADALMPDKTFKKASDQFDQDAQNVLVSLKDYKGKYLVLFFWPLDHTFVCPTEIIQFSEAYEEFKKVDCELVGCSTDSEYCHLSWVEKPRKEGGIGAVNMPILADRALKVSKADRVLKVSQDYGVLIEGEGIALRGLFIISDKGVVRHITINDLPVGRNAEEALRLVQAFQYTDKHGEVCPAGWKPGEKSMKADPTGSKEYFAGVEE 654
            A +GK APDF A A+MPD  FK              + L DY+GKY+V FF+P+D TFVCPTEII FS+A EEFKK+DCE++G S DS +CH +W++ PRK+GG+G +N+P++AD+         +  +SQDYGVL E EGIA RGLFII DKG++R ITINDLPVGR+ EE LRLVQAFQ+TD++GEVCPAGWKPG  ++K D   SK++F    +
Sbjct:    6 AHIGKLAPDFKAKAVMPDGQFKD-------------IKLSDYRGKYVVFFFYPMDFTFVCPTEIIAFSDAVEEFKKIDCEIIGASVDSHFCHHAWIKTPRKQGGLGHMNIPLVADK---------LQTISQDYGVLKEDEGIAYRGLFIIDDKGILRQITINDLPVGRSVEETLRLVQAFQFTDQYGEVCPAGWKPGSDTIKPDVQKSKDFFTAFPQ 200
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BLAST of jgi.p|Trimin1|353382 vs. uniprot
Match: A0A0P4VTT4_SCYOL (Thioredoxin domain-containing protein n=5 Tax=Heterotremata TaxID=116706 RepID=A0A0P4VTT4_SCYOL)

HSP 1 Score: 258 bits (659), Expect = 2.230e-82
Identity = 121/179 (67.60%), Postives = 143/179 (79.89%), Query Frame = 1 
Query:  112 VSLKDYKGKYLVLFFWPLDHTFVCPTEIIQFSEAYEEFKKVDCELVGCSTDSEYCHLSWVEKPRKEGGIGAVNMPILADRALKVSKADRVLKVSQDYGVLIEGEGIALRGLFIISDKGVVRHITINDLPVGRNAEEALRLVQAFQYTDKHGEVCPAGWKPGEKSMKADPTGSKEYFAGV 648
            +SLKDYKGKYLVLFF+PLD TFVCPTEII FSE  EEF K+ CE+V CSTDS + HL+WV  PRKEGG+G +N+P+LAD+++++SKA         YGVL +  G++ RGLFII DK  +R ITINDLPVGR+ +E LRLVQAFQ+ DKHGEVCPAGWKPG KSMKADP GSKEYF  V
Sbjct:   28 ISLKDYKGKYLVLFFYPLDFTFVCPTEIIAFSERAEEFHKIGCEVVACSTDSHFSHLAWVNTPRKEGGLGQMNIPLLADKSMEISKA---------YGVLKDDAGLSFRGLFIIDDKQNLRQITINDLPVGRDVDETLRLVQAFQFVDKHGEVCPAGWKPGSKSMKADPVGSKEYFKAV 197
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BLAST of jgi.p|Trimin1|353382 vs. uniprot
Match: A0A8C4S592_ERPCA (Peroxiredoxin-1 n=2 Tax=Polypteridae TaxID=8289 RepID=A0A8C4S592_ERPCA)

HSP 1 Score: 258 bits (658), Expect = 3.160e-82
Identity = 121/213 (56.81%), Postives = 155/213 (72.77%), Query Frame = 1 
Query:    4 ATVGKAAPDFTADALMPDKTFKKASDQFDQDAQNVLVSLKDYKGKYLVLFFWPLDHTFVCPTEIIQFSEAYEEFKKVDCELVGCSTDSEYCHLSWVEKPRKEGGIGAVNMPILADRALKVSKADRVLKVSQDYGVLIEGEGIALRGLFIISDKGVVRHITINDLPVGRNAEEALRLVQAFQYTDKHGEVCPAGWKPGEKSMKADPTGSKEYFA 642
            A +GK AP+F A A+MPDK FK              + L DY+GKY+V FF+PLD TFVCPTEII FS+  +EFKK++CE++G S DS +CHL+W+  PRK+GG+G +N+P++AD    ++K         DYGVL E EGIA RGLFI+ DKG++R ITINDLPVGR+ +E LRLVQAFQ+TDKHGEVCPAGWKPG  ++K D   SKE+F+
Sbjct:    6 AHIGKPAPNFKATAVMPDKQFKD-------------IQLSDYRGKYVVFFFYPLDFTFVCPTEIIAFSDRADEFKKINCEVIGASVDSHFCHLAWINTPRKQGGLGQMNIPLVADTLRTIAK---------DYGVLKEDEGIAFRGLFIVDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVKQSKEFFS 196
[Close]
BLAST of jgi.p|Trimin1|353382 vs. uniprot
Match: A0A7N4PB00_SARHA (Peroxiredoxin-1 n=3 Tax=Metatheria TaxID=9263 RepID=A0A7N4PB00_SARHA)

HSP 1 Score: 258 bits (658), Expect = 7.550e-82
Identity = 124/213 (58.22%), Postives = 156/213 (73.24%), Query Frame = 1 
Query:    4 ATVGKAAPDFTADALMPDKTFKKASDQFDQDAQNVLVSLKDYKGKYLVLFFWPLDHTFVCPTEIIQFSEAYEEFKKVDCELVGCSTDSEYCHLSWVEKPRKEGGIGAVNMPILADRALKVSKADRVLKVSQDYGVLIEGEGIALRGLFIISDKGVVRHITINDLPVGRNAEEALRLVQAFQYTDKHGEVCPAGWKPGEKSMKADPTGSKEYFA 642
            A +G  AP+F A A+MPD+ FK              +SL DYKGKY+VLFF+PLD TFVCPTEII FS+  EEFKK++C+++G S DS +CHL+WV   +KEGG+GAVN+P+L+D    ++         QDYG+L   EGI+ RGLFII DKG++R ITINDLPVGR+ +E LRLVQAFQ+TDKHGEVCPAGWKPG  ++K D  GSKEYF+
Sbjct:   31 AKIGFPAPNFKATAVMPDQQFKD-------------ISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWVNTGKKEGGLGAVNIPLLSDPKRTIA---------QDYGILKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVRGSKEYFS 221
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353382 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJ15_9STRA6.790e-17399.25Natural killer enhancing factor n=1 Tax=Tribonema ... [more]
O93241_CYPCA2.180e-8559.62Natural killer cell enhancing factor n=4 Tax=Cypri... [more]
A0A8B9LKW5_ASTMX7.430e-8358.69Peroxiredoxin-1 n=3 Tax=Astyanax mexicanus TaxID=7... [more]
A0A0E9X1E4_ANGAN7.840e-8357.28Thioredoxin domain-containing protein n=2 Tax=Tele... [more]
W5MFV2_LEPOC9.600e-8357.75Peroxiredoxin-1 n=37 Tax=Actinopteri TaxID=186623 ... [more]
Q5BJJ3_DANRE1.150e-8258.69Zgc:110343 n=11 Tax=Clupeocephala TaxID=186625 Rep... [more]
A0A8C9TI16_SCLFO1.800e-8256.22Peroxiredoxin-1 n=2 Tax=Scleropages formosus TaxID... [more]
A0A0P4VTT4_SCYOL2.230e-8267.60Thioredoxin domain-containing protein n=5 Tax=Hete... [more]
A0A8C4S592_ERPCA3.160e-8256.81Peroxiredoxin-1 n=2 Tax=Polypteridae TaxID=8289 Re... [more]
A0A7N4PB00_SARHA7.550e-8258.22Peroxiredoxin-1 n=3 Tax=Metatheria TaxID=9263 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_160contigContig_160:24579..30600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353382|estExt_Genemark1.C_Ctg_1600006
BRITEko00000,ko00001,ko01000,ko04147
KEGG Pathwayko04146,ko04214,map04146,map04214
KEGG koko:K03386,ko:K13279
EC1.11.1.15
GOsGO:0000122,GO:0000228,GO:0000302,GO:0000303,GO:0000305,GO:0000785,GO:0000790,GO:0000791,GO:0001501,GO:0001775,GO:0001906,GO:0001909,GO:0001932,GO:0002228,GO:0002252,GO:0002262,GO:0002376,GO:0002443,GO:0002449,GO:0003674,GO:0003824,GO:0004601,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005719,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0005777,GO:0005782,GO:0005829,GO:0006355,GO:0006357,GO:0006801,GO:0006950,GO:0006952,GO:0006955,GO:0006979,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008283,GO:0008340,GO:0008379,GO:0009056,GO:0009266,GO:0009408,GO:0009628,GO:0009636,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009987,GO:0010035,GO:0010038,GO:0010259,GO:0010286,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0019219,GO:0019220,GO:0019222,GO:0019430,GO:0020037,GO:0023051,GO:0030101,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031907,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032872,GO:0033554,GO:0034101,GO:0034599,GO:0034614,GO:0042221,GO:0042267,GO:0042325,GO:0042493,GO:0042542,GO:0042579,GO:0042592,GO:0042737,GO:0042743,GO:0042744,GO:0042802,GO:0042803,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043408,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044429,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045087,GO:0045321,GO:0045892,GO:0045934,GO:0046649,GO:0046677,GO:0046906,GO:0046983,GO:0048037,GO:0048519,GO:0048523,GO:0048583,GO:0048731,GO:0048856,GO:0048872,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051174,GO:0051186,GO:0051187,GO:0051246,GO:0051252,GO:0051253,GO:0051716,GO:0051920,GO:0055114,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070302,GO:0070887,GO:0071450,GO:0071451,GO:0072593,GO:0080090,GO:0080134,GO:0080135,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901222,GO:1901363,GO:1901700,GO:1901701,GO:1902531,GO:1902679,GO:1903506,GO:1903507,GO:1990748,GO:2000112,GO:2000113,GO:2001141
Preferred namePRDX1
DescriptionPeroxiredoxin 1
COG categoryO
Max annot lvl33208|Metazoa
EggNOG OGsCOG0450@1|root,KOG0852@2759|Eukaryota,38B9P@33154|Opisthokonta,3B9IG@33208|Metazoa,3CS1I@33213|Bilateria,480FQ@7711|Chordata,498B2@7742|Vertebrata,49RUV@7898|Actinopterygii
Evalue6.1e-86
Seed ortholog7955.ENSDARP00000076104
Hectar predicted targeting categoryother localisation
TranscriptId353704
TrackFilteredModels1
ProteinId353382
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353382gene_16092Tribonema minus UTEX_B_3156 geneContig_160 24579..30600 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353382Trimin1|353382|estExt_Genemark1.C_Ctg_1600006Tribonema minus UTEX_B_3156 polypeptideContig_160 24865..30600 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16092_8exon_16092_8Tribonema minus UTEX_B_3156 exonContig_160 24579..24930 -
exon_16092_7exon_16092_7Tribonema minus UTEX_B_3156 exonContig_160 25338..25445 -
exon_16092_6exon_16092_6Tribonema minus UTEX_B_3156 exonContig_160 26112..26222 -
exon_16092_5exon_16092_5Tribonema minus UTEX_B_3156 exonContig_160 26663..26785 -
exon_16092_4exon_16092_4Tribonema minus UTEX_B_3156 exonContig_160 27873..27899 -
exon_16092_3exon_16092_3Tribonema minus UTEX_B_3156 exonContig_160 28343..28468 -
exon_16092_2exon_16092_2Tribonema minus UTEX_B_3156 exonContig_160 29713..29844 -
exon_16092_1exon_16092_1Tribonema minus UTEX_B_3156 exonContig_160 30490..30600 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_16092UTR3_16092Tribonema minus UTEX_B_3156 three_prime_UTRContig_160 24579..24864 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16092CDS_16092Tribonema minus UTEX_B_3156 CDSContig_160 30490..30600 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16092 ID=mRNA_16092|Name=jgi.p|Trimin1|353382|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1090bp|location=Sequence derived from alignment at Contig_160:24579..30600- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGACCGTGGGCAAAGCAGCTCCCGACTTCACCGCAGATGCGCTCAT
GCCGGACAAGACCTTCAAAAAGGCAAGCGATCAGTTTGATCAAGATGCGC
AAAATGTGCTGGTCTCGCTAAAGGACTACAAGGGCAAGTACCTGGTGCTC
TTCTTCTGGCCCCTGGACCACACCTTTGTGTGTCCAACGGAGATCATACA
GTTCAGCGAGGCTTATGAGGAGTTTAAGAAGGTTGACTGTGAGCTGGTGG
GATGCAGTACGGACTCTGAGTACTGCCACCTGTCGTGGGTGGAGAAGCCG
CGCAAGGAGGGGGGTATAGGCGCCGTCAACATGCCCATCCTGGCGGACCG
CGCGCTAAAAGTCTCTAAGGCGGACCGCGTGCTGAAAGTCTCGCAGGACT
ATGGGGTGCTCATTGAGGGCGAGGGGATAGCGTTAAGGGGGCTGTTCATC
ATCAGCGACAAGGGGGTCGTCCGTCACATCACCATCAACGACCTGCCCGT
GGGCCGCAACGCCGAAGAGGCTCTCCGGCTGGTGCAGGCGTTCCAGTACA
CAGACAAGCACGGGGAGGTGTGCCCTGCAGGGTGGAAGCCCGGCGAAAAG
TCCATGAAGGCCGACCCTACGGGCAGCAAGGAGTATTTTGCGGGGGTTGA
GGAGGCGCCTGCCGCTGCTGCGGCCCCGCCCGCCGCAGCAGCAGCTGCCA
AGAAGGGAGCAAAGGCAGCTCCTGCCAAGCCTGAGAAGGCGGCGGAGCCT
GCGGAGGCTGCAGCGGACGCCAAAGAGCCTGGCCGCAAGAAGCGCAAGGC
TTGAAGTTCTCATCGAAGACGCGTTGATATACTTCACGTACATGCAAGCG
CGGCCGCCCGCAACGTGCGCGGCACACGCGCATGACGCAAGTGACCCATC
ATATGTGCTAGCCATTGCGACACAAACCCTCTCGTCATGGCACAACATGA
CTATGCGAAAGGCAACACACACAGACGTTTCCCCTTGAGCGGTGCACCAG
CTTGTAATGGGTTTGGGCACAGCATTGCATGGCGAACGTGCTTGTGTCTC
GAAGAATGGATCAGTCTTCAATGCTACCCAGAGCTTGGCC
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protein sequence of jgi.p|Trimin1|353382

>Trimin1|353382|estExt_Genemark1.C_Ctg_1600006 ID=Trimin1|353382|estExt_Genemark1.C_Ctg_1600006|Name=jgi.p|Trimin1|353382|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=268bp
MATVGKAAPDFTADALMPDKTFKKASDQFDQDAQNVLVSLKDYKGKYLVL
FFWPLDHTFVCPTEIIQFSEAYEEFKKVDCELVGCSTDSEYCHLSWVEKP
RKEGGIGAVNMPILADRALKVSKADRVLKVSQDYGVLIEGEGIALRGLFI
ISDKGVVRHITINDLPVGRNAEEALRLVQAFQYTDKHGEVCPAGWKPGEK
SMKADPTGSKEYFAGVEEAPAAAAAPPAAAAAAKKGAKAAPAKPEKAAEP
AEAAADAKEPGRKKRKA*
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mRNA from alignment at Contig_160:24579..30600-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16092 ID=mRNA_16092|Name=jgi.p|Trimin1|353382|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6022bp|location=Sequence derived from alignment at Contig_160:24579..30600- (Tribonema minus UTEX_B_3156 )
ATGGCGACCGTGGGCAAAGCAGCTCCCGACTTCACCGCAGATGCGCTCAT
GCCGGACAAGACCTTCAAAAAGGCAAGCGATCAGTTTGATCAAGATGCGC
AAAATGTGCTGGTGTGCCCCTGCTGGCTGGCAATGTTATCATTGCTGGTG
GCTGCACATCGACAGTGCCGTATCGATGAAGGTAGTCTAGCTCCGACAAA
TTGGCAGGATGAACTGATTGCTGCTTGTGCACCAGCGAAGTCGCCCACCA
CCGCAACACGGAACATGGATTGAAAAGAAGCACACAGCTCGTGCAGTGCA
TGGCATGCTGACATGAAGCAAAGCTGCAGCAAGCAACAGCGATGTTTATG
TGCGCAGTGGTACTCTACCCGGTGTGCAGCGAGCATGCTGAGCTGGCGCA
GAAATCCAGCATGTGTGAGGCCTGCTGTGATGCTCATCCTGCTACAATAT
TCCTTATATAGATGAATATATCTGCTCGCATTCCGTGGACCTACCGTTGC
GACACGCCGAGGAAGGCCATATGTTCCTTTATAAACTTATGCCTGGGAGA
GCACATGGTCTATTTCTTTTCTGCTGAGCATGTGGTGTTCTGCAGGCAGC
AGCAAAGGCGGCTGGCTGTGCTGTGCTGCGCCTGGTGTTGCGTCTTGCGC
GGCTATCATGACACAAAGTGTATGCGAACACTTCCATTTTCGTCACGCTG
TGTGCACTTCACAAAGTGTATGTGAACATTTCCGTCACGCTCTGTGCACG
CCACAGGTCTCGCTAAAGGACTACAAGGGCAAGTACCTGGTGCTCTTCTT
CTGGCCCCTGGACCACACCTTTGTGTGTCCAACGGAGATCATACAGTTCA
GCGAGGCTTATGAGGAGTTTAAGAAGGTTGACTGTGAGGTGAGTGTCCAT
CATGGCCCACTAAAGTATATGTTGGTGGAAGGCACTTGCGGCTAACCATC
CCTCGTCACCTAGAGCTCTACAATCTTTTGATTCGGTTTTTCATGAAACT
GCACCAGACATGTGACATGCTTCAGCCCACGGTTCTTTTCGGTAGTGCAC
AAGGTCAGTGCGTACGTGGCCATTGTACTTTTTGTGTGTGTGTACGGCCT
TTTGGTGGTGCTGGCTAGCGTGACGCCCGATTGGCTGGCCATGTTACCTT
AGATGTACCCCCAGATTGTCTGTGTCACGCAATGACGACAGTCATGACGC
ATACATGTATCGTTGTCAGTATTGCGCTGCGTGCTGGTCGGCGCTGCTGT
GAAGTAGCGCCACACAGCTTGCGTAAACTCGCAAAGCTCAATGGCGGCCG
CATGTTTCACAACGGGGGGCGTGCTTTGCCGCTGGTCGTGGCCGACAAGG
GTTAGGGTTAGGGCCTAACCCTAAGTGATGTACACCCGGCGCCCTCCGTC
AAGTCAGTATTCCTGGAGAGAACAAGGGCGCATGGCGTCACGCACTGCTG
CTGCTTCCGCTTGTATGTATGCCCGTAATCGTGCGCGTCGCGACTGGGAG
TGCAACTGCATCTTCGTCATCTTCAACTGGGTATCAACTTCAATTTGAGC
ACTGGCTCGGTGTGTGGTCAATTGCTCGACGGTCTTGTGCACGCTGCTCT
GCACGCCCTGTGCAGCCCGCAAGTTGCAGCATGCTACCATGGCTTGTTGC
ACACGGTCGACCATCCTGTTCATCGCCCTCTCCGCGCGCTCTGCAGCTGG
TGAACTGCAGCACACACTTTGGTGGATGGCCACCCTTTGCTAAAGACCTG
TCGAGCAGCACCGTATATTTACCACAAATACTAAATGGAATTGCGCTTTC
ATTCCATGTCTCGAAGATGATTGTGTTACTGCTCGTGAAGCCACGCACCA
GCAGCTGCTGCTGCTGCAGCACAGTCCTGGAGCACTGGCACCTGCCACTT
TTAACAGAATGCTGCAACGCAACACATCTCTGTAGCATCACGGCTACTTC
AACTTCTCAGGCTGCCTCGGTTGAAGTCACCTCACTTTTGCACGCTGCTC
TACGCCCCCTGCGCAGCTGAGGCGCTGCGACACCGACCGAGTGCCCCCCC
CCTCCCCCAGAATCAACCATCAGAATCTGCACCGATCTGATCGATCTGCC
CCTCACTGCCGTGCATGCTCATTCCTGCGCAGCTGGTGGGATGCAGTACG
GACTCTGAGTACTGCCACCTGTCGTGGGTGGAGAAGCCGCGCAAGGAGGG
GGGTATAGGCGCCGTCAACATGCCCATCCTGGCGGACCGCGCGCTAAAAG
TCTCTAAGGTATGTAGGTATGTAGGGTAAACATGTGCACCGCTGGGTGAC
GTGCGCTTGCGGCATCACATGTGAAAACGTAGCCCTAGTGCCTTTGTGCC
TCAACATCAGGCCGAAGTCATACTGCACATATGCTCTTTGGTACACACGT
AAATGCCAGCACATGGTGTTGGTGGCCTGAAAGTCATTGGCGCCGTCAAC
ATGCCCATCCTAGCGCACCGCGCGCTGAAAGTCTCGAAGGTATGTAAGTA
TGGTCAACATGTACGCCGCTGGGCGACCTGCATTGTCACGTCTCCCATCA
CATATGCAAACGGGGCCATAGTGCCCATGTTTGAAAATCAGGCTAGGGTA
TACTGCGAGCATGCTCTTTGCTACCTTGTAGTATCATGTAGCTGCCCGCG
CATCGCATTGGTAGCCTGAAAGTCATTGGCGCCGTCAGCATGCCTACTTA
GGCGGACCGCGTGCTGAAAGTCTCGCAGGTATGTAGAGTTTGGAGAGCGT
TGTTGCCATGTCTCTCACGACATATGCAAACGGAGTCCTAGTGCCTTTGT
GCCTGACAAAGGGGCCGGGGTGAAGGGGCATAGGTACTGCGAGTACACAC
CCCAGGGTGACGCCTGCCAGGGCTTCGTGTGGGGGTCTCCAAGGTGAGCT
GTGAACTCCATGCAGTATTGTGGTGAAGGTAGGCTCAACGCTGATGCGGG
AAAGTTTCAGGCATTGTCGATCTCGCCACTGGCCAATGGTCGAGCGTATC
AAGCGTACTATTGCAGTTAACACATACTGCAGGCATTCGCGTTTGCCTCC
AGTTCACACACAGGCAGTCACATACTTGAACAATTCTGCAGGTGAAGTGG
CTGCAGGACATAACTTCCTGTTTTCAACGCTGTGAGCAAGCCCAATATAA
TGTATAACTTGCCATGCACATTCTTGGTGACCGTTGCCAACAAATTACTT
CAGCATCCACTCGCGAAGCACGCACCACGATGCTGTCGCCTACTTCAACA
GCGTGCAACATTCACAGCAGCTCAGTGAGCTCAGTGGTACTCCTTTTGGT
CCCCGCTCACTATTACCCATCGCTTGTCAGTCACGTGGAAAAGCAGGTGC
GCTGGCGGCGATGACAACCCACATCCTCAGAGCGGAGCGTGCCACCCTGA
TTTCGCACAAGCTGGCTGAGACTTGGAGGACTCAAAAGTGCCCAAGCGGG
CCAGACTTATTGTAGGAGTGCGATCTATTATGTGGTGACGCATGGGTGTG
TGCGGAAATGTTGGTAACTGTAACCCAAATAGGCACATGCCGGCCATTAA
CATCTGTCGGCTGTAGCAGCACGCTCGATGTTGTCCTGCTAGAGCATCAA
ACATACAGTTGAAGTTTGCACGTCGCTCATCCATATAGCGGATTCCACTG
AGTCTACAAGCCGCAGCGGTGTAGGGGGGAGTGCAAAGATGAAGTTGGAG
GAATACGACTGGTACTTCATTGTACAAAAATGAAATCTGTGCGCACGCGT
CTGCTTTAACCGCCCACAGCGCTGATCAATCTGTGTGCCGGGTCTCGTTG
TTATGCGTTCCGCAGGACTATGGGGTGCTCATTGAGGGCGAGGGGATAGC
GTTAAGGGGGCTGTTCATCATCAGCGACAAGGGGGTCGTCCGTCACATCA
CCATCAACGACCTGCCCGTGGGCCGCAACGCCGAAGAGGTATGTTTGTAC
GCCACCAGCACACTTGTCGTTCGCGCTCTTACAGCAGAATGTGTGCCATA
CTGTTTGGATGGCTGCGGGGTTATTAAAGAATATTTGTGCTACAGCCGTG
CTATAGTCTCATGTTACTGTTCAAGGAGGAGGACGCTGTGAACATCCACT
TCAGAGAATGGCTATGTCAAGATGCCCATGAGCTAACGTAGTGCATTGAG
GCTGTGTTCAGCTTTGAAGCATCAGTCGGGGGGCCCGCCTGTAAACACAC
TGCTATAAGTGTGCCCCCCATGCAACAACAGCGTAGCTGGCAGCGAGCAT
CCTTGCAGTGTTCAATACTGCAGTACTCGAAATACTGTCGTACCTGAAGT
ATGTAAACCAAAATCATAGTGCGCATGTTACACCAAGTAGTACACTTTGG
TACACTTCCGCGTGTACTGCTGCCGCAGGCTCTCCGGCTGGTGCAGGCGT
TCCAGTACACAGACAAGCACGGGGAGGTGTGCCCTGCAGGGTGGAAGCCC
GGCGAAAAGTCCATGAAGGCCGACCCTACGGGCAGCAAGGTATGCACATA
TACTTCAACTATGGCTGTTTCAATCAGGAAGGGGGCAGTTCATGCTGTGG
CCTCTTTGAGTCAGAACAAAAATGCCGTATAACACGCATTGGGCATGCCA
TTTAAAACGCATGGGGCGTCACCTGCGGCGGTCCAACCTCAGCAGTTCTG
CACCTTTTTGTCTCGAAAGGCCCTTGCGTCGCCCGATCATTCGTCCTCTT
TTCGAGGCAAAGTCCAGGTCATTTTCCTTCGACGCTGGTGTAGAAAAGGA
AGAATGTTTGGGCCCCCATGTTTCTCGCCCGATGTGAATGCCATAAGCGA
CCGTCTGAACATGTCACCGCGCGCCGCGCTGGCAGATGTTTTGGTGCCCA
CTAAGCTGTAACACTTGAATTGCACGACTGGATGTGCATGTGCCTGCCCT
CTTGGCAGTGCATCGCATGGTTTGCATGTCTGAAACTGCGCGCGGCACCC
TTGCAAACTTCAACTTCTCAGCAGCACTTTGCCGCAGCGTGCCATGGGGG
GCAATCGAGCACCCTCACTCCACAGACGCCCCCGCAGGCACAGGTTGATG
CTAGTTACTTCCCCACAGTGTAGGAGAGCGCAGCATATTGAGGGCAGGTT
GAACGGACTCGGCAATCTCACGTTGACGTCTCCCGCAATTCCGCATGGGT
GACAGGAGTATTTTGCGGGGGTTGAGGAGGCGCCTGCCGCTGCTGCGGCC
CCGCCCGCCGCAGCAGCAGCTGCCAAGAAGGGAGCAAAGGCAGCTCCTGC
CAAGCCTGAGAAGGTACGCAGCGCTGTGAATGCGACAGCTGACTCATTCA
TTTGTTGCAGGGCGAACATGTAATGTGGCGTTGTGAATGCCTCAGCTGCG
CCGTTTCTTGCGGTGCAAACATGCACAATGCACGGGTGCCTCACATTTTC
ATCTCACATGTCAAGTTGAGTGTTCATTGGCCATCCTGTTGGCCTTTGTT
TGGAAGCCTTTGCCCATGAGTTGCTGCCAGGCCGCAAGATTCACGCACTC
AATGGCAGTGCATTATGGCACCGCTTGCAGGTTTTGGTCACATTGGCAAC
ATTTCAGCTTACGCGCCTGCATGGTGAATGCGCGAGTGTCACCCTAGTGT
TCGATACCTGCAAGATAACCAGAGCGCGTCTCAGCGCTAACCATGCAATC
TTTGATGTTGCATTGCTCAGGCGGCGGAGCCTGCGGAGGCTGCAGCGGAC
GCCAAAGAGCCTGGCCGCAAGAAGCGCAAGGCTTGAAGTTCTCATCGAAG
ACGCGTTGATATACTTCACGTACATGCAAGCGCGGCCGCCCGCAACGTGC
GCGGCACACGCGCATGACGCAAGTGACCCATCATATGTGCTAGCCATTGC
GACACAAACCCTCTCGTCATGGCACAACATGACTATGCGAAAGGCAACAC
ACACAGACGTTTCCCCTTGAGCGGTGCACCAGCTTGTAATGGGTTTGGGC
ACAGCATTGCATGGCGAACGTGCTTGTGTCTCGAAGAATGGATCAGTCTT
CAATGCTACCCAGAGCTTGGCC
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Coding sequence (CDS) from alignment at Contig_160:24579..30600-

>mRNA_16092 ID=mRNA_16092|Name=jgi.p|Trimin1|353382|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=804bp|location=Sequence derived from alignment at Contig_160:24579..30600- (Tribonema minus UTEX_B_3156 )
ATGGCGACCGTGGGCAAAGCAGCTCCCGACTTCACCGCAGATGCGCTCAT
GCCGGACAAGACCTTCAAAAAGGCAAGCGATCAGTTTGATCAAGATGCGC
AAAATGTGCTGGTCTCGCTAAAGGACTACAAGGGCAAGTACCTGGTGCTC
TTCTTCTGGCCCCTGGACCACACCTTTGTGTGTCCAACGGAGATCATACA
GTTCAGCGAGGCTTATGAGGAGTTTAAGAAGGTTGACTGTGAGCTGGTGG
GATGCAGTACGGACTCTGAGTACTGCCACCTGTCGTGGGTGGAGAAGCCG
CGCAAGGAGGGGGGTATAGGCGCCGTCAACATGCCCATCCTGGCGGACCG
CGCGCTAAAAGTCTCTAAGGCGGACCGCGTGCTGAAAGTCTCGCAGGACT
ATGGGGTGCTCATTGAGGGCGAGGGGATAGCGTTAAGGGGGCTGTTCATC
ATCAGCGACAAGGGGGTCGTCCGTCACATCACCATCAACGACCTGCCCGT
GGGCCGCAACGCCGAAGAGGCTCTCCGGCTGGTGCAGGCGTTCCAGTACA
CAGACAAGCACGGGGAGGTGTGCCCTGCAGGGTGGAAGCCCGGCGAAAAG
TCCATGAAGGCCGACCCTACGGGCAGCAAGGAGTATTTTGCGGGGGTTGA
GGAGGCGCCTGCCGCTGCTGCGGCCCCGCCCGCCGCAGCAGCAGCTGCCA
AGAAGGGAGCAAAGGCAGCTCCTGCCAAGCCTGAGAAGGCGGCGGAGCCT
GCGGAGGCTGCAGCGGACGCCAAAGAGCCTGGCCGCAAGAAGCGCAAGGC
TTGA
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