mRNA_16102 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177853
Unique NamemRNA_16102
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|177853 vs. uniprot
Match: A0A835ZBN9_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBN9_9STRA)

HSP 1 Score: 482 bits (1240), Expect = 1.060e-171
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 1 
Query:    1 SPAPVLSACLAAIGQLARGGGGDAERSLREARLGGDLRDLVVHQEAAVRARACNLLGNLRRHSDWFYEHTCRHAGAMSQLASLSPPPLFCRFACFAVGNAAFHSRALYPLLAPATAPLVTALSATDPKTRANAAGALGNLVRNGGALCGALSRADAPLQLLLLATRPVGGSAQQTGSSAPQGGSTPQQIALFSLGTCCAYGACREALLGGVEGGRGGLEAMLLKLEGGSRDGVLIKYAARLRGKLAAPALV 753
            SPAPVLSACLAAIGQLARGGGGDAERSLREARLGGDLRDLVVHQEAAVRARACNLLGNLRRHSDWFYEHTCRHAGAMSQLASLSPPPLFCRFACFAVGNAAFHSRALYPLLAPATAPLVTALSATDPKTRANAAGALGNLVRNGGALCGALSRADAPLQLLLLATRPVGGSAQQTGSSAPQGGSTPQQIALFSLGTCCAYGACREALLGGVEGGRGGLEAMLLKLEGGSRDGVLIKYAARLRGKLAAPALV
Sbjct:    1 SPAPVLSACLAAIGQLARGGGGDAERSLREARLGGDLRDLVVHQEAAVRARACNLLGNLRRHSDWFYEHTCRHAGAMSQLASLSPPPLFCRFACFAVGNAAFHSRALYPLLAPATAPLVTALSATDPKTRANAAGALGNLVRNGGALCGALSRADAPLQLLLLATRPVGGSAQQTGSSAPQGGSTPQQIALFSLGTCCAYGACREALLGGVEGGRGGLEAMLLKLEGGSRDGVLIKYAARLRGKLAAPALV 251
[Close]
BLAST of jgi.p|Trimin1|177853 vs. uniprot
Match: A0A835Z840_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z840_9STRA)

HSP 1 Score: 298 bits (764), Expect = 2.190e-98
Identity = 175/261 (67.05%), Postives = 187/261 (71.65%), Query Frame = 1 
Query:    4 PAPVLSACLAAIGQLARGGGGDAERSLREARLGGDLRDLVVHQEAAVRARACNLLGNLRRHSDWFYEHTCRHAGAMSQLASLSP---------PPLFCRFACFAVGNAAFHSRALYPLLAPATAPLVTALSATDPKTRANAAGALGNLVRNGGALCGALSRADAPLQLLLLATRPVGGSAQQTG--SSAPQGGSTPQQIALFSLGTCCAYGACREALLGGVEGGRGGLEAMLLKLEGGSRDGVLIKYAARLRGKLAAPALV 753
            PAPVLSACLAAIGQLARGGGGDAERSLREARLGG L +L+VHQEAAVRARACNLLGNL RHSDWFYE     A + ++ ++L P          P   +FACFAVGNAAFHSRALYPLLAPA                                            QLLLLATRPVGGSAQQ G  S+APQGGSTPQQIALFSLGTCCAY ACREAL+GGVEGGR GLEAMLLKLEGG+RDGV+IKYAARLRGKLAAPALV
Sbjct:   49 PAPVLSACLAAIGQLARGGGGDAERSLREARLGGALGELLVHQEAAVRARACNLLGNLCRHSDWFYEELGASAASPTRSSALLPRLVRACSDADPATQKFACFAVGNAAFHSRALYPLLAPAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLLLLATRPVGGSAQQAGGSSAAPQGGSTPQQIALFSLGTCCAYAACREALMGGVEGGREGLEAMLLKLEGGTRDGVVIKYAARLRGKLAAPALV 309
[Close]
BLAST of jgi.p|Trimin1|177853 vs. uniprot
Match: A0A7J7Q342_9CHLO (Non-specific serine/threonine protein kinase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q342_9CHLO)

HSP 1 Score: 152 bits (383), Expect = 3.370e-38
Identity = 102/214 (47.66%), Postives = 130/214 (60.75%), Query Frame = 1 
Query:  109 LRDLVVHQEAAVRARACNLLGNLRRHSDWFYEHTCRHAGAMSQLASLSPPPLFCR-FACFAVGNAAFHSRALYPLLAPATAPLVTALSATDPKTRANAAGALGNLVRNGGALCGALSRADAPLQLLLLATRPVG-GSAQQTGSSAPQGGSTPQQIALFSLGTCCAYGACREALLGGVEGGRGGLEAMLLKLEGGSR-DGVLIKYAARLRGKLAA 741
            LR L+ H ++ +RAR  NLLGNL R+S +FY    RH      +   S      R FACFA+GNAAFH+ +LY  L PA APLV  L A + KTRANAAGALGNLVRNGG LCG + +A A   LL  A  P      ++ GS A   G++P +IALFS+G  CA+  CR+ LL      + GL  +LLKL+  S  DG L++Y AR + KL +
Sbjct:  968 LRRLLSHHDSGIRARVANLLGNLCRYSGYFYPALERHVILPLLIERCSDSDECARKFACFAIGNAAFHNNSLYEALRPAVAPLVLLLGAVEEKTRANAAGALGNLVRNGGQLCGEIIQAGALQALLGTALGPDSTADGRRPGSGAE--GASPVKIALFSIGNMCAHKECRDQLL------KLGLREVLLKLQLSSDGDGTLLRYIARAQAKLGS 1173
[Close]
BLAST of jgi.p|Trimin1|177853 vs. uniprot
Match: A0A6H5K6T6_9PHAE (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T6_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.840e-34
Identity = 107/237 (45.15%), Postives = 124/237 (52.32%), Query Frame = 1 
Query:    7 APVLSACLAAIGQLARGGGGDAERSLREARLGGDLRDLVVHQEAAVRARACNLLGNLRRHSDWFYE--HTCRHAGA----------------------------MSQLASLSPP--PLFCRFACFAVGNAAFHSRALYPLLAPATAPLVTALSATDPKTRANAAGALGNLVRNGGALCGALSRADAPLQLLLLATRPVGGSAQQTGSSAPQGGSTPQQIALFSLGTCCAYGACREAL 621
            A + +  L    QLAR    +  R LR+A +   L  L+ H + AVRA+ACNL+GNL RHS +FY      R+ G+                               L  L     P   +FACFAVGNAAFHS ALY  LAPA APLV AL   + KTRANAAGALGNLVRNGGAL G L+R      LL LA R    S              P++IALFSLGTCCAY  CREAL
Sbjct: 1684 AGLATGALVIASQLARSSADNYGR-LRDAGVVASLGGLLAHGDPAVRAKACNLVGNLCRHSAFFYAALQEVRYGGSGGSRPDDNDIDEGVGGGEELRLDGELSIADHLVGLCADRDPSARKFACFAVGNAAFHSDALYARLAPAVAPLVAALDDPEEKTRANAAGALGNLVRNGGALGGDLARRGGVGALLNLAARDPSPS--------------PRRIALFSLGTCCAYVPCREAL 1905
[Close]
BLAST of jgi.p|Trimin1|177853 vs. uniprot
Match: A0A5J4XYM6_9CHLO (Non-specific serine/threonine protein kinase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XYM6_9CHLO)

HSP 1 Score: 137 bits (345), Expect = 3.410e-33
Identity = 93/210 (44.29%), Postives = 122/210 (58.10%), Query Frame = 1 
Query:  109 LRDLVVHQEAAVRARACNLLGNLRRHSDWFYEHTCRHAGAMSQLASLSPPPLFCR-FACFAVGNAAFHSRALYPLLAPATAPLVTALSATDPKTRANAAGALGNLVRNGGALCGALSRADAPLQLLLLATRPVGGSAQQTGSSAPQGGSTPQQIALFSLGTCCAYGACREALLGGVEGGRGGLEAMLLKLEGGSRDGVLIKYAARLRGKL 735
            LR L+ H E AVRAR CNLLGN+ RHS +FY    RH+     +   +   +  R FACFA+GNA FH+ +LY  L  +  PLV+ L   + KTRANAAGALGNLVRN G LC  L  A A LQ L+        S  +  ++A   G+ P +I+LFSLG  CA+  C +ALL      + G+   L +L+  S D  + KY  R++GKL
Sbjct:  658 LRKLLSHTEPAVRARVCNLLGNMCRHSAYFYTALDRHSLLTPLIQRCTDEDIATRKFACFAIGNAGFHNSSLYEALRASIGPLVSLLHDREDKTRANAAGALGNLVRNSGLLCRPLIEARA-LQALVEVINAPQPSTPRGVAAAAADGTNPLRISLFSLGNMCAHKECADALL------QLGIGTSLARLKS-SPDATVQKYVQRIQGKL 859
[Close]
BLAST of jgi.p|Trimin1|177853 vs. uniprot
Match: A0A7S1SJR7_9CHLO (Non-specific serine/threonine protein kinase n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SJR7_9CHLO)

HSP 1 Score: 135 bits (341), Expect = 1.200e-32
Identity = 107/247 (43.32%), Postives = 130/247 (52.63%), Query Frame = 1 
Query:    1 SPAPVLSACLAAIGQLARGGGGDAERSLREARLGGDLRDLVVHQEAAVRARACNLLGNLRRHSDWFYEHTCRHAGAMSQLASLSPPPLFCR-FACFAVGNAAFHSRALYPLLAPATAPLVTALSATDPKTRANAAGALGNLVRNGGALCGALSRADAPLQLLLLATRPVGGSAQQTGSSAPQGGSTPQQIALFSLGTCCAYGACREALLGGVEGGRGGLEAMLLKLEGGSRDGVLIKYAARLRGKLA 738
            +PA VL   L  + QLAR    + E   R A L   +R L+VH +  VRAR CNL+GN+ RHS +FY    RH      +          R FACFA+GNA FH+  LY  L  +  PLV  L   + KTRANAAGALGNLVRN G LC  L +ADA   LL     P      +   SA  GGS P +IALFSLG  CA+  CREAL         G    + +L   S D  + KY  R++ KLA
Sbjct:  705 NPAGVLVDGLLTVSQLARISRDNYEPIAR-AGLYHAVRRLLVHPDPGVRARVCNLVGNMCRHSGYFYSALERHGLLAPLIDRCGDSDRSTRKFACFAIGNAGFHNAGLYEPLRASIPPLVALLRDEEDKTRANAAGALGNLVRNSGLLCRELIKADALQALLDTVLHP------EAAGSASDGGS-PLKIALFSLGNMCAHRECREALQAV------GFTEAIDRLAS-SNDTTVQKYVTRIKTKLA 936
[Close]
BLAST of jgi.p|Trimin1|177853 vs. uniprot
Match: A0A7S3VME8_DUNTE (Non-specific serine/threonine protein kinase n=2 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VME8_DUNTE)

HSP 1 Score: 134 bits (338), Expect = 3.300e-32
Identity = 96/214 (44.86%), Postives = 117/214 (54.67%), Query Frame = 1 
Query:    1 SPAPVLSACLAAIGQLARGG--GGDAERSLREARLGGDLRDLVVHQEAAVRARACNLLGNLRRHSDWFYEHTCRHAGAMSQLASLSPPPLFCR-FACFAVGNAAFHSRALYPLLAPATAPLVTALSATDP-KTRANAAGALGNLVRNGGALCGALSRADAPLQLLLLATRPVGGSAQQTGSSAPQG--GSTPQQIALFSLGTCCAYGACREALL 624
            +P  VL   L  + QLAR      +    +  A +   +R L+ H +  VRAR CNLLGN+ RHS +FY    RH      +          R FACFA+GNA FH+ +LY  L P+ +PLV  L   +  KTRANAAGALGNLVRN   LCG L +A A   LL  AT    G     G S P G  G +P +IALFSLG  CA+  CREALL
Sbjct: 1196 NPPAVLVDVLLVVSQLARVNKESFNTYEPISRATIYPHVRKLLAHPDPGVRARVCNLLGNMCRHSAFFYSALDRHGLVGPLIERCQDADKSTRKFACFAIGNAGFHNASLYEALRPSISPLVALLRGEEEDKTRANAAGALGNLVRNSSQLCGELIKAGALRALLDTATS---GERHAVGRSGPSGADGGSPIKIALFSLGNMCAHRECREALL 1406
[Close]
BLAST of jgi.p|Trimin1|177853 vs. uniprot
Match: A0A7S3MHS7_9SPIT (Non-specific serine/threonine protein kinase n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3MHS7_9SPIT)

HSP 1 Score: 127 bits (318), Expect = 3.050e-31
Identity = 88/211 (41.71%), Postives = 110/211 (52.13%), Query Frame = 1 
Query:  106 DLRDLVVHQEAAVRARACNLLGNLRRHSDWFYEHTCRHAGAMSQLASLSPPPLFCR-FACFAVGNAAFHSRALYPLLAPATAPLVTALSATDPKTRANAAGALGNLVRNGGALCGALSRADAPLQLLLLATRPVGGSAQQTGSSAPQGGSTPQQIALFSLGTCCAYGACREALLGGVEGGRGGLEAMLLKLEGGSRDGVLIKYAARLRGKL 735
            DL  L+ H +A +RA+ CNL+GNL RH+ +FYE   +H    + +     P    R FACFAVGNA FH+  LY  L P    LV  L   + KTRANAAGALGN VRN  ALC  L R  A  QLL +     G S             +P++IALFS+G  C Y  CR AL     G R  +E   +       D  ++KYA R+  KL
Sbjct:  128 DLNTLICHDDAGIRAKVCNLIGNLCRHTGYFYEKLLKHRLIEAAIQCCQDPDRNTRKFACFAVGNAGFHNEVLYEHLRPCVKLLVDLLKDQEEKTRANAAGALGNFVRNSNALCKDLIRHRALEQLLEVVAHDQGPS------------QSPRRIALFSIGNLCVYKECRRALE--EMGIRRIIEPFTVNTP--QADQQVVKYATRIIQKL 322
[Close]
BLAST of jgi.p|Trimin1|177853 vs. uniprot
Match: A0A830HI49_9CHLO (Non-specific serine/threonine protein kinase n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HI49_9CHLO)

HSP 1 Score: 130 bits (328), Expect = 7.080e-31
Identity = 100/223 (44.84%), Postives = 123/223 (55.16%), Query Frame = 1 
Query:  118 LVVHQEAAVRARACNLLGNLRRHSDWFYEHTCRHAGAMSQL-ASLSPPPLFCR-FACFAVGNAAFHSRALYPLLAPATAPLVTAL---------SATDPKTRANAAGALGNLVRNGGALCGALSRADAPLQLLLLATRPVGGSAQ--QTGSSAP----QGGSTPQQIALFSLGTCCAYGACREALLGGVEGGRGGLEAMLLKLEGGSRDGVLIKYAARLRGKL 735
            L    +AAVRARACNL+GNL RHSD+FYE   R +G +  L A  S      R FACFA+GNA FHS ALYP LA A + LV  L         +  + KTRANAAGA+GNLVRNG +LCG L    A   L+      V  +A   + G  AP    +   +P +IALFSLG  CA+  CRE LL         L+A+L      + D  + KY AR+  KL
Sbjct: 1239 LTFPSDAAVRARACNLVGNLCRHSDFFYE-PLRASGIVDALVARCSDVDKATRKFACFAIGNAGFHSNALYPNLASAISALVAILRGGPSTPGDTVEEEKTRANAAGAIGNLVRNGASLCGELVAQGAIDALVETVQAAVSENAAPIRNGGGAPSDEAEASQSPLKIALFSLGNMCAHAECRECLLRPEAHFLETLDALLTCA---ASDSTVAKYVARIHNKL 1457
[Close]
BLAST of jgi.p|Trimin1|177853 vs. uniprot
Match: A0A8J9S9T3_9CHLO (Probable serine/threonine-protein kinase 36 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S9T3_9CHLO)

HSP 1 Score: 129 bits (324), Expect = 2.460e-30
Identity = 108/250 (43.20%), Postives = 131/250 (52.40%), Query Frame = 1 
Query:    4 PAPVLSACLAAIGQLARGGGGDAERS----LREARLGGDLRDLVVHQEAAVRARACNLLGNLRRHSDWFYEHTCRHAGAMSQLASLSPP--PLFCRFACFAVGNAAFHSRALYPLLAPATAPLVTALSATDPKTRANAAGALGNLVRNGGALCGALSRADAPLQLLLLATRPVGGSAQQTGSSAPQGGSTPQQIALFSLGTCCAYGACREALLGGVEGGRGGLEAMLLKLEGGSRDGVLIKYAARLRGKL 735
            PA VL   +   GQLAR       R     L EA L   +R L+ H E  VRARACNL+GNL R++ +FYE     AG +  L            +FACFA+GNA FHS ALY  L  A  PLV  LS  + KTRANAAGALGNLVRN   LC  L +A A   L+ +   P     ++  SS   G   P +IALFSLG   A+  C E LL      R G++  L +L   S D + IKY  R+  KL
Sbjct: 1409 PASVLVPAMLNYGQLAR-----LSRENYPLLGEAMLVEHMRPLLEHGEGEVRARACNLIGNLCRYNTFFYE-AISAAGLIEVLIDRCSDFDRATRKFACFAIGNAGFHSAALYMGLRGAVRPLVELLSDDEDKTRANAAGALGNLVRNSPMLCPTLLQAHALEALMAVINEP---GKERRSSSGELG--EPAKIALFSLGNMAAHRECAEVLL------RLGIDRTLQRLSASS-DPMTIKYVQRIHTKL 1640
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177853 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZBN9_9STRA1.060e-171100.00Non-specific serine/threonine protein kinase n=1 T... [more]
A0A835Z840_9STRA2.190e-9867.05Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7J7Q342_9CHLO3.370e-3847.66Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6H5K6T6_9PHAE1.840e-3445.15Non-specific serine/threonine protein kinase n=1 T... [more]
A0A5J4XYM6_9CHLO3.410e-3344.29Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S1SJR7_9CHLO1.200e-3243.32Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S3VME8_DUNTE3.300e-3244.86Non-specific serine/threonine protein kinase n=2 T... [more]
A0A7S3MHS7_9SPIT3.050e-3141.71Non-specific serine/threonine protein kinase n=1 T... [more]
A0A830HI49_9CHLO7.080e-3144.84Non-specific serine/threonine protein kinase n=1 T... [more]
A0A8J9S9T3_9CHLO2.460e-3043.20Probable serine/threonine-protein kinase 36 n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_160contigContig_160:133935..135478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177853|e_gw1.160.2.1
BRITEko00000,ko00001,ko01000,ko01001
KEGG Pathwayko04341,map04341
KEGG koko:K06228
EC2.7.11.1
GOsGO:0000003,GO:0000166,GO:0000278,GO:0000280,GO:0000281,GO:0000910,GO:0000911,GO:0001101,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005856,GO:0005874,GO:0005881,GO:0006355,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006935,GO:0006996,GO:0007049,GO:0007112,GO:0007140,GO:0007154,GO:0007163,GO:0007165,GO:0007166,GO:0007224,GO:0007227,GO:0007228,GO:0007275,GO:0007276,GO:0007349,GO:0007584,GO:0008064,GO:0008092,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008589,GO:0009524,GO:0009553,GO:0009558,GO:0009561,GO:0009605,GO:0009653,GO:0009791,GO:0009889,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010639,GO:0010646,GO:0010647,GO:0014070,GO:0015630,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0019219,GO:0019222,GO:0019538,GO:0019894,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030010,GO:0030030,GO:0030031,GO:0030554,GO:0030832,GO:0030833,GO:0030837,GO:0031156,GO:0031272,GO:0031323,GO:0031326,GO:0031333,GO:0031344,GO:0031667,GO:0032101,GO:0032104,GO:0032107,GO:0032271,GO:0032272,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032956,GO:0032970,GO:0033043,GO:0033206,GO:0033273,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043326,GO:0043327,GO:0043412,GO:0043900,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044782,GO:0045880,GO:0048229,GO:0048232,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051128,GO:0051129,GO:0051171,GO:0051252,GO:0051301,GO:0051321,GO:0051493,GO:0051494,GO:0051593,GO:0051704,GO:0051716,GO:0060176,GO:0060255,GO:0060271,GO:0060491,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0070925,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090066,GO:0097159,GO:0097367,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0110053,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0140013,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901698,GO:1901700,GO:1902410,GO:1902903,GO:1902904,GO:1903046,GO:1903047,GO:1903506,GO:2000112,GO:2001141
Preferred nameMKK2
Descriptionpositive regulation of hh target transcription factor activity
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0597@1|root,KOG0597@2759|Eukaryota
Evalue2.58e-30
Seed ortholog2880.D8LEJ4
Hectar predicted targeting categoryother localisation
TranscriptId178175
TrackFilteredModels1
ProteinId177853
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177853gene_16102Tribonema minus UTEX_B_3156 geneContig_160 133935..135478 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16102_1exon_16102_1Tribonema minus UTEX_B_3156 exonContig_160 133935..134138 +
exon_16102_2exon_16102_2Tribonema minus UTEX_B_3156 exonContig_160 134927..135478 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16102CDS_16102Tribonema minus UTEX_B_3156 CDSContig_160 133935..134138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177853Trimin1|177853|e_gw1.160.2.1Tribonema minus UTEX_B_3156 polypeptideContig_160 133935..135478 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16102 ID=mRNA_16102|Name=jgi.p|Trimin1|177853|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=756bp|location=Sequence derived from alignment at Contig_160:133935..135478+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGCCCCGCTCCCGTGCTCTCGGCGTGCCTTGCGGCGATAGGGCAGCTGGC
GCGGGGGGGCGGGGGGGATGCGGAACGGTCGCTGCGGGAGGCGCGGTTGG
GGGGGGACCTAAGGGACCTGGTGGTGCACCAGGAGGCGGCTGTGCGTGCA
CGCGCGTGCAACTTGCTGGGCAACCTGCGCCGCCACTCGGACTGGTTCTA
TGAGCACACATGCAGACATGCCGGTGCCATGTCTCAGCTCGCCTCCCTGT
CCCCCCCCCCCCTTTTCTGCAGGTTTGCGTGCTTCGCTGTCGGCAACGCG
GCCTTCCACTCGCGCGCCCTGTACCCCCTGCTCGCCCCCGCAACGGCCCC
CCTTGTGACAGCGCTCAGCGCGACAGACCCCAAGACGCGCGCCAACGCTG
CGGGCGCGCTCGGCAACCTCGTGCGCAACGGCGGCGCACTGTGCGGAGCG
CTGTCACGTGCTGACGCGCCCCTGCAGCTGCTGCTGCTGGCAACGCGCCC
TGTCGGTGGCAGTGCTCAGCAAACGGGCAGCAGCGCTCCGCAGGGGGGGT
CCACACCCCAGCAGATTGCGCTGTTCTCGCTGGGCACGTGCTGCGCGTAT
GGCGCATGCCGCGAGGCGCTGCTGGGGGGCGTAGAGGGGGGACGGGGGGG
GCTGGAGGCCATGCTATTGAAGTTGGAGGGGGGCTCCAGGGATGGTGTCT
TAATCAAGTACGCGGCACGACTGAGGGGGAAGCTTGCCGCGCCGGCGCTT
GTTTGA
back to top

protein sequence of jgi.p|Trimin1|177853

>Trimin1|177853|e_gw1.160.2.1 ID=Trimin1|177853|e_gw1.160.2.1|Name=jgi.p|Trimin1|177853|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=252bp
SPAPVLSACLAAIGQLARGGGGDAERSLREARLGGDLRDLVVHQEAAVRA
RACNLLGNLRRHSDWFYEHTCRHAGAMSQLASLSPPPLFCRFACFAVGNA
AFHSRALYPLLAPATAPLVTALSATDPKTRANAAGALGNLVRNGGALCGA
LSRADAPLQLLLLATRPVGGSAQQTGSSAPQGGSTPQQIALFSLGTCCAY
GACREALLGGVEGGRGGLEAMLLKLEGGSRDGVLIKYAARLRGKLAAPAL
V*
back to top

mRNA from alignment at Contig_160:133935..135478+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16102 ID=mRNA_16102|Name=jgi.p|Trimin1|177853|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1544bp|location=Sequence derived from alignment at Contig_160:133935..135478+ (Tribonema minus UTEX_B_3156 )
AGCCCCGCTCCCGTGCTCTCGGCGTGCCTTGCGGCGATAGGGCAGCTGGC
GCGGGGGGGCGGGGGGGATGCGGAACGGTCGCTGCGGGAGGCGCGGTTGG
GGGGGGACCTAAGGGACCTGGTGGTGCACCAGGAGGCGGCTGTGCGTGCA
CGCGCGTGCAACTTGCTGGGCAACCTGCGCCGCCACTCGGACTGGTTCTA
TGAGGTGCGTCGGGAGGCCGCCATGACGCGCGTTGCCGCTGCGGCGTCGC
TGCCGCTTTGTGCACTAGAACACCACTGCATGGCGTGGTCTGCAGATGTG
GGTGGAGAACATTTGAACGTGCACAGCGCGTTCGGCAAGCTGATATTCTA
TGATGTACCACGGGTTTCTGTGAGGCTTGGTGCGCAGCATGGATAGCCTT
CGCAGTGTCTGCATCACTGCACACGGCAGAGACATCGGGCTGCTCTTCTG
CATAGCCTAGTCTGGACAAGGCAGTGTGCTACACCGCAAAGCGCATTCAC
CATCTATTGTACCTTTTCTGAGCCTTTGTATTTGGCATTCGTAAACTGAA
GTGCTCGCTGTCACGCCGTACACGCGATCGGCGCAGGAGCTCGGTGCCAG
TGCTGCATCACCCACGCGCAGCAGTGCTCTGCTGCCCCGCCTGGTGCGGG
CGTGCAGCGATCCCGGCCCTGCAACACAGAAGTGAGTGCCCTTGACTGTA
TGCTAAAAGTTGATTGTTTGTACAGCAGGGTGGACTGACCGTGCGCACAA
CGAAGGCACACAGCTGCATGAGTCATCAGTGGTTAAAGTCGCCAACATGG
ACAGGATGAGTTGGAATTATTTGCGAGCATCACGCCGCACAGTGACGCTG
GCGAGTGCGTGTCAGAATACATGAACATCAAGAGGTACCGGCCACACGTG
CCGCATTGGCACCAGACTCTCCATGCGTGCAGTCAGCAGCCCTGCCGCCG
GCACGGCATTCAGGACTTCAACACGAGAACATGCAGCCTCAGCACACATG
CAGACATGCCGGTGCCATGTCTCAGCTCGCCTCCCTGTCCCCCCCCCCCC
TTTTCTGCAGGTTTGCGTGCTTCGCTGTCGGCAACGCGGCCTTCCACTCG
CGCGCCCTGTACCCCCTGCTCGCCCCCGCAACGGCCCCCCTTGTGACAGC
GCTCAGCGCGACAGACCCCAAGACGCGCGCCAACGCTGCGGGCGCGCTCG
GCAACCTCGTGCGCAACGGCGGCGCACTGTGCGGAGCGCTGTCACGTGCT
GACGCGCCCCTGCAGCTGCTGCTGCTGGCAACGCGCCCTGTCGGTGGCAG
TGCTCAGCAAACGGGCAGCAGCGCTCCGCAGGGGGGGTCCACACCCCAGC
AGATTGCGCTGTTCTCGCTGGGCACGTGCTGCGCGTATGGCGCATGCCGC
GAGGCGCTGCTGGGGGGCGTAGAGGGGGGACGGGGGGGGCTGGAGGCCAT
GCTATTGAAGTTGGAGGGGGGCTCCAGGGATGGTGTCTTAATCAAGTACG
CGGCACGACTGAGGGGGAAGCTTGCCGCGCCGGCGCTTGTTTGA
back to top

Coding sequence (CDS) from alignment at Contig_160:133935..135478+

>mRNA_16102 ID=mRNA_16102|Name=jgi.p|Trimin1|177853|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=756bp|location=Sequence derived from alignment at Contig_160:133935..135478+ (Tribonema minus UTEX_B_3156 )
AGCCCCGCTCCCGTGCTCTCGGCGTGCCTTGCGGCGATAGGGCAGCTGGC
GCGGGGGGGCGGGGGGGATGCGGAACGGTCGCTGCGGGAGGCGCGGTTGG
GGGGGGACCTAAGGGACCTGGTGGTGCACCAGGAGGCGGCTGTGCGTGCA
CGCGCGTGCAACTTGCTGGGCAACCTGCGCCGCCACTCGGACTGGTTCTA
TGAGCACACATGCAGACATGCCGGTGCCATGTCTCAGCTCGCCTCCCTGT
CCCCCCCCCCCCTTTTCTGCAGGTTTGCGTGCTTCGCTGTCGGCAACGCG
GCCTTCCACTCGCGCGCCCTGTACCCCCTGCTCGCCCCCGCAACGGCCCC
CCTTGTGACAGCGCTCAGCGCGACAGACCCCAAGACGCGCGCCAACGCTG
CGGGCGCGCTCGGCAACCTCGTGCGCAACGGCGGCGCACTGTGCGGAGCG
CTGTCACGTGCTGACGCGCCCCTGCAGCTGCTGCTGCTGGCAACGCGCCC
TGTCGGTGGCAGTGCTCAGCAAACGGGCAGCAGCGCTCCGCAGGGGGGGT
CCACACCCCAGCAGATTGCGCTGTTCTCGCTGGGCACGTGCTGCGCGTAT
GGCGCATGCCGCGAGGCGCTGCTGGGGGGCGTAGAGGGGGGACGGGGGGG
GCTGGAGGCCATGCTATTGAAGTTGGAGGGGGGCTCCAGGGATGGTGTCT
TAATCAAGTACGCGGCACGACTGAGGGGGAAGCTTGCCGCGCCGGCGCTT
GTTTGA
back to top