Trimin1|347875|estExt_Genemark1.C_Ctg_160155 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|347875
Unique Name	Trimin1\|347875\|estExt_Genemark1.C_Ctg_160155
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	296

Homology

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BLAST of jgi.p|Trimin1|347875 vs. uniprot
Match: A0A836CJM9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJM9_9STRA)

HSP 1 Score: 524 bits (1349), Expect = 7.630e-187
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0

Query:   24 PLERRAEAAVSCAAPWQCLAAQNDXXXGELXXXXXXXXXXXXNLYALDVELGVAEEAMLRNRAATSTLHMTTLFRHGRSNSFFESDAVAVRIWHCSQAQRDREVGGGVPWRCGMCSWRERCNSLDAPSDWAPLAARPGSTSLFLEERRAFCWSAYSAEEDDTADSYVLVACRKEQQANHVVQHDQELVDVVKLQGEVYAKVYSIVQDEFIGQEALRVPYATVTLQLDLGKDGHARAITYLQFAIQEGEASKRRGAREAGGRPRGTDWLDCEP 295
            PLERRAEAAVSCAAPWQCLAAQNDXXXGELXXXXXXXXXXXXNLYALDVELGVAEEAMLRNRAATSTLHMTTLFRHGRSNSFFESDAVAVRIWHCSQAQRDREVGGGVPWRCGMCSWRERCNSLDAPSDWAPLAARPGSTSLFLEERRAFCWSAYSAEEDDTADSYVLVACRKEQQANHVVQHDQELVDVVKLQGEVYAKVYSIVQDEFIGQEALRVPYATVTLQLDLGKDGHARAITYLQFAIQEGEASKRRGAREAGGRPRGTDWLDCEP
Sbjct:   24 PLERRAEAAVSCAAPWQCLAAQNDXXXGELXXXXXXXXXXXXNLYALDVELGVAEEAMLRNRAATSTLHMTTLFRHGRSNSFFESDAVAVRIWHCSQAQRDREVGGGVPWRCGMCSWRERCNSLDAPSDWAPLAARPGSTSLFLEERRAFCWSAYSAEEDDTADSYVLVACRKEQQANHVVQHDQELVDVVKLQGEVYAKVYSIVQDEFIGQEALRVPYATVTLQLDLGKDGHARAITYLQFAIQEGEASKRRGAREAGGRPRGTDWLDCEP 295

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BLAST of jgi.p|Trimin1|347875 vs. uniprot
Match: A0A835ZFJ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFJ7_9STRA)

HSP 1 Score: 109 bits (273), Expect = 4.770e-23
Identity = 67/112 (59.82%), Postives = 73/112 (65.18%), Query Frame = 0

Query:  184 DTADSYVLVACRKEQQANHVVQHDQELV-------------DVVKLQGEVYAKVYSIVQDEFIGQEALRVPYATVTLQLDLGKDGHARAITYLQFAIQEGEASKRRGAREAG 282
            DT DS+VLV C +EQQA HVV+  QE V              VV+LQGEVYAK Y IVQDEFIGQ         V LQL+LG+DGHARAIT   FAIQEGEASKRRGA   G
Sbjct:    5 DTVDSFVLVTCGEEQQATHVVRRSQEPVWDWNYAFSCPARSGVVQLQGEVYAKGYGIVQDEFIGQ---------VNLQLELGEDGHARAITNRWFAIQEGEASKRRGAGGGG 107

[Close]

BLAST of jgi.p|Trimin1|347875 vs. uniprot
Match: A0A835Z6V5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6V5_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.100e-9
Identity = 64/109 (58.72%), Postives = 66/109 (60.55%), Query Frame = 0

Query:   24 PLERRAEAAVSCAAPWQCLAAQNDXXXGELXXXXXXXXXXXX--NLYALDVELGV----AEEAMLRNRAATSTLHMTTL-------------FRHGRSNSFFESDAVAV 113
            P   R  A  SCAAPWQCLAAQN XXX   XXXXXXXXXXXX   LYALD ELGV    AEE +LRNRAATSTL  T L                GR+NSFFE  A A 
Sbjct:  240 PEASRRSARRSCAAPWQCLAAQNGXXXXXXXXXXXXXXXXXXXXKLYALDAELGVGAKVAEETVLRNRAATSTLRETALEAAEPLPRATQRVVAGGRNNSFFEGGAGAT 348

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347875 vs. uniprot

BLAST of jgi.p|Trimin1|347875 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A836CJM9_9STRA	7.630e-187	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835ZFJ7_9STRA	4.770e-23	59.82	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835Z6V5_9STRA	5.100e-9	58.72	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 274..295

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_16	contig	Contig_16:1380635..1384771 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347875	mRNA_3085	Tribonema minus UTEX_B_3156	mRNA	Contig_16 1380635..1384986 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|347875|estExt_Genemark1.C_Ctg_160155 ID=Trimin1|347875|estExt_Genemark1.C_Ctg_160155|Name=jgi.p|Trimin1|347875|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=296bp
MAAAAAAAAAAAAARRAARPPPRPLERRAEAAVSCAAPWQCLAAQNDDSS
GELTAEAQQQQQQQQNLYALDVELGVAEEAMLRNRAATSTLHMTTLFRHG
RSNSFFESDAVAVRIWHCSQAQRDREVGGGVPWRCGMCSWRERCNSLDAP
SDWAPLAARPGSTSLFLEERRAFCWSAYSAEEDDTADSYVLVACRKEQQA
NHVVQHDQELVDVVKLQGEVYAKVYSIVQDEFIGQEALRVPYATVTLQLD
LGKDGHARAITYLQFAIQEGEASKRRGAREAGGRPRGTDWLDCEP*