Trimin1|347868|estExt_Genemark1.C_Ctg_160135 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|347868
Unique Name	Trimin1\|347868\|estExt_Genemark1.C_Ctg_160135
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	260

Homology

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BLAST of jgi.p|Trimin1|347868 vs. uniprot
Match: A0A835ZGL9_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGL9_9STRA)

HSP 1 Score: 508 bits (1307), Expect = 1.200e-181
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0

Query:    1 MARPCRWTLWAALLSVPGSAFFGSVAVHNTHRGRGCIRLGSSDNSDYLSNLDGESKSGAPAADYLSKLPRSDAEKKTSNANESDDYLTKLDQGAPSTPTSYLDNLQGDAATATGTVGTTDAPESTEPAAPVADNEGLQGLKDQLLKMALGTNRGFSSRMEERRDIADIVAELEIYQNIGPDGTEAQGSVADSVRLNLAFQSSAFTPLTFLGRKVDDVLRPLKFNFPSKLRNVGWLEHSFVDKDIRIARAFGSMFVLLRC 259
            MARPCRWTLWAALLSVPGSAFFGSVAVHNTHRGRGCIRLGSSDNSDYLSNLDGESKSGAPAADYLSKLPRSDAEKKTSNANESDDYLTKLDQGAPSTPTSYLDNLQGDAATATGTVGTTDAPESTEPAAPVADNEGLQGLKDQLLKMALGTNRGFSSRMEERRDIADIVAELEIYQNIGPDGTEAQGSVADSVRLNLAFQSSAFTPLTFLGRKVDDVLRPLKFNFPSKLRNVGWLEHSFVDKDIRIARAFGSMFVLLRC
Sbjct:    1 MARPCRWTLWAALLSVPGSAFFGSVAVHNTHRGRGCIRLGSSDNSDYLSNLDGESKSGAPAADYLSKLPRSDAEKKTSNANESDDYLTKLDQGAPSTPTSYLDNLQGDAATATGTVGTTDAPESTEPAAPVADNEGLQGLKDQLLKMALGTNRGFSSRMEERRDIADIVAELEIYQNIGPDGTEAQGSVADSVRLNLAFQSSAFTPLTFLGRKVDDVLRPLKFNFPSKLRNVGWLEHSFVDKDIRIARAFGSMFVLLRC 259

[Close]

BLAST of jgi.p|Trimin1|347868 vs. uniprot
Match: A0A6H5KJ99_9PHAE (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJ99_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.210e-9
Identity = 42/117 (35.90%), Postives = 59/117 (50.43%), Query Frame = 0

Query:  173 EIYQNIGPDGTE-----------------------------AQGSVADSVRLNLAFQSSAFTPLTFLGRKVDDVLRPLKFNFPS-KLRNVGWLEHSFVDKDIRIARAFG-SMFVLLR 258
            +I+QNI  DGTE                             A  S+    RL L+F+ S ++P T LGR V   L P K +FP     N GW++ +F+D++IR+ARAFG ++FVL R
Sbjct:  162 QIFQNINEDGTEITNVVDLQPKAAPVLERFAGSTSARLEVFAAASLEGDKRLTLSFRRSQYSPQTLLGRDVSATLPPFKVSFPEIPGTNAGWIDTTFIDEEIRVARAFGGNLFVLAR 278

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347868 vs. uniprot

BLAST of jgi.p|Trimin1|347868 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835ZGL9_9STRA	1.200e-181	100.00	PAP_fibrillin domain-containing protein n=1 Tax=Tr...	[more]
A0A6H5KJ99_9PHAE	1.210e-9	35.90	PAP_fibrillin domain-containing protein n=2 Tax=Ec...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006843	Plastid lipid-associated protein/fibrillin conserved domain	PFAM	PF04755	PAP_fibrillin	coord: 185..256 e-value: 3.2E-5 score: 24.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..122

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_16	contig	Contig_16:1202954..1207102 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347868	mRNA_3059	Tribonema minus UTEX_B_3156	mRNA	Contig_16 1202919..1207255 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|347868|estExt_Genemark1.C_Ctg_160135 ID=Trimin1|347868|estExt_Genemark1.C_Ctg_160135|Name=jgi.p|Trimin1|347868|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=260bp
MARPCRWTLWAALLSVPGSAFFGSVAVHNTHRGRGCIRLGSSDNSDYLSN
LDGESKSGAPAADYLSKLPRSDAEKKTSNANESDDYLTKLDQGAPSTPTS
YLDNLQGDAATATGTVGTTDAPESTEPAAPVADNEGLQGLKDQLLKMALG
TNRGFSSRMEERRDIADIVAELEIYQNIGPDGTEAQGSVADSVRLNLAFQ
SSAFTPLTFLGRKVDDVLRPLKFNFPSKLRNVGWLEHSFVDKDIRIARAF
GSMFVLLRC*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006843	PAP/fibrillin_dom