Trimin1|347825|estExt_Genemark1.C_Ctg_160076 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|347825
Unique NameTrimin1|347825|estExt_Genemark1.C_Ctg_160076
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length351
Homology
BLAST of jgi.p|Trimin1|347825 vs. uniprot
Match: A0A836CK92_9STRA (HMG box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK92_9STRA)

HSP 1 Score: 507 bits (1305), Expect = 2.480e-178
Identity = 350/350 (100.00%), Postives = 350/350 (100.00%), Query Frame = 0
Query:    1 MLDDLEALEDSQQHSQLSSGTKRKLDDYQSVNAETPADEHEETGQEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPASDAEGEEXEADADGGDPHETGDDPAADXXXXXXAGTDGXXXXXXXXXXXXXXSAAASEPAKKIKRAQSAWMFFLADKRDEVVKANPGARIGAVVKECSGIWAAMPPEEKQVYEAQAAEDKARLQRELQAAGLTKLPSAGNRSGEERDLPPDATTTILLPLSRVRKTAKMDAEVKSINADGLATIAKATELFIATLAKRSWGAARQSGRRNLRVTDIAQCVDADGALYFLREELATMAXXXXXXXXXXXXXXXXALAAGPGSKSITSFFART 350
            MLDDLEALEDSQQHSQLSSGTKRKLDDYQSVNAETPADEHEETGQEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPASDAEGEEXEADADGGDPHETGDDPAADXXXXXXAGTDGXXXXXXXXXXXXXXSAAASEPAKKIKRAQSAWMFFLADKRDEVVKANPGARIGAVVKECSGIWAAMPPEEKQVYEAQAAEDKARLQRELQAAGLTKLPSAGNRSGEERDLPPDATTTILLPLSRVRKTAKMDAEVKSINADGLATIAKATELFIATLAKRSWGAARQSGRRNLRVTDIAQCVDADGALYFLREELATMAXXXXXXXXXXXXXXXXALAAGPGSKSITSFFART
Sbjct:    1 MLDDLEALEDSQQHSQLSSGTKRKLDDYQSVNAETPADEHEETGQEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPASDAEGEEXEADADGGDPHETGDDPAADXXXXXXAGTDGXXXXXXXXXXXXXXSAAASEPAKKIKRAQSAWMFFLADKRDEVVKANPGARIGAVVKECSGIWAAMPPEEKQVYEAQAAEDKARLQRELQAAGLTKLPSAGNRSGEERDLPPDATTTILLPLSRVRKTAKMDAEVKSINADGLATIAKATELFIATLAKRSWGAARQSGRRNLRVTDIAQCVDADGALYFLREELATMAXXXXXXXXXXXXXXXXALAAGPGSKSITSFFART 350          
BLAST of jgi.p|Trimin1|347825 vs. uniprot
Match: A0A6U3YH94_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3YH94_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.300e-22
Identity = 64/183 (34.97%), Postives = 106/183 (57.92%), Query Frame = 0
Query:  134 AASEPA-KKIKRAQSAWMFFLADKRDEVVKANPGARIGAVVKECSGIWAAMPPEEKQVYEAQAAEDKARLQRELQA---AGLTKLPSAGNRSGEERDLPPDATTTILLPLSRVRKTAKMDAEVKSINADGLATIAKATELFIATLAKRSWGAARQSGRRNLRVTDIAQCVDADGALYFLREEL 312
            AA++P  + IK+A++A+  F  +KR EV  ANPGA IG + K    +WA +  EE++VY+A+AAE++ R+ +E++A   AGL     AG   G E      A++++++P+ ++RK AK+D +V+ I  +    +AK  ELF   L   +   A+   RR L   D+A+         FL+E++
Sbjct:  104 AATKPILRPIKKARTAYFIFAGEKRAEVQAANPGAAIGTLAKAIGQLWANLSAEEREVYQARAAEERERVSKEMEALREAGLLPNQLAGADGGGEGSN--SASSSLVIPVHKIRKIAKLDPDVRKITPEATVLLAKCAELFTCKLGVETAKVAQMQNRRKLLPEDVAEVCSTRDECLFLKEDV 284          
BLAST of jgi.p|Trimin1|347825 vs. uniprot
Match: A0A7S0C498_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C498_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.360e-18
Identity = 64/222 (28.83%), Postives = 111/222 (50.00%), Query Frame = 0
Query:  140 KKIKRAQSAWMFFLADKRDEVVKANPGARIGAVVKECSGIWAAMPPEEKQVYEAQAAEDKARLQREL---QAAGLTKLPSAGNRSGEERDLPPDATTTILLPLSRVRKTAKMDAEVKSINADGLATIAKATELFIATLAKRSWGAARQSGRRNLRVTDIAQCVDADGALYFLREELATMAXXXXXXXXXXXXXXXX--------ALAAGPGSKSITSFFART 350
            K IK+A++ +  F  DKR E+ +A+PG  +    +    +WAA+ PEEK+ Y+ ++A ++  + R++   + AGL +   +  +  E   L       + LPLSR++K A++D+EVK ++ + L  IA++ ELF   L   +   A+   RR +   DI+         +FLRE+L  +                         ++ A  GSK +TS+F+RT
Sbjct:   90 KPIKKARTGYFIFTDDKRAEIQEAHPGEGVAFQARALGKLWAAITPEEKESYQRRSALERENVTRQILERKEAGLLEDNVSNEQKNEVGGL------QLTLPLSRIKKIARLDSEVKGMSREALLLIARSAELFTTKLGLETVRVAQMQNRRKILPEDISDACTTREEFFFLREDLRDLLNDQQLEKKKNAATSTSLTSKSNAKSVKASEGSKPLTSYFSRT 305          
BLAST of jgi.p|Trimin1|347825 vs. uniprot
Match: A0A448Z0U5_9STRA (HMG box domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z0U5_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 5.610e-16
Identity = 62/220 (28.18%), Postives = 101/220 (45.91%), Query Frame = 0
Query:  134 AASEPAKKIKRAQSAWMFFLADKRDEVVKANPGARIGAVVKECSGIWAAMPPEEKQVYEAQAAEDKARLQRELQAAGLTKLPSAGNRSGEERDLPPDATTTILLPLSRVRKTAKMDAEVKSINADGLATIAKATELFIATLAKRSWGAARQSGRRNLRVTDIAQCVDADGALYFLREELATMAXXXXXXXXXXXXXXXXALA------AGPGSKSITSFF 347
            AA    + +KRA++A+  F  ++R  + K +PG  +    K     W ++P  EK  + A AA +K R+        L  LP        +   P D+   ++ P++R+R+ AK+D EVK+++ + L  +A+A EL +A L       AR   RR L   D+A       A +FLRE++  +A                  A      A  G+K +TS+F
Sbjct:  124 AAPVAVRPLKRARTAYFIFADEQRPSIQKEHPGETVAVQAKRIGARWKSLPDAEKDRFRALAAAEKERV--------LASLPEGAPGPVGDAGSPSDS---LVFPVARIRRIAKLDPEVKTLSREALQLVARAAELALARLGTECVRVARMQNRRTLLPDDVADVCTHREAFHFLREDIRDLAAAQQKGSGKAEAAAAAGRAEKAKREAAAGTKPLTSYF 332          
BLAST of jgi.p|Trimin1|347825 vs. uniprot
Match: A0A7S3JX96_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JX96_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.070e-14
Identity = 58/176 (32.95%), Postives = 94/176 (53.41%), Query Frame = 0
Query:  137 EPAKKIKRAQSAWMFFLADKRDEVVKANPGARIGAVVKECSGIWAAMPPEEKQVYEAQAAEDKARLQRELQA-AGLTKLPSAGNRSGEERDLPPDATTTILLPLSRVRKTAKMDAEVKSINADGLATIAKATELFIATLAKRSWGAARQSGRRNLRVTDIAQCVDADGALYFLREE 311
            EP   +K+  SA++ F A+ R  V    P A  G V K  S  W ++   EK+ +   A  D+ R +RE +       L S+ N  G  + L P  T   ++P+SRV+K AK+D +++S++ +  A I K TELF+A LA  +  A+  SG+R ++ +D+A C+       +LR +
Sbjct:   90 EPKGPLKKPVSAFLHFCAENRAVVKDRLPNASAGEVTKTISESWRSLNEAEKKRFMDIAIADRERYEREKKKYPAAAALSSSTNSKGNTKGLEPHET---VIPISRVKKIAKLDPQLRSLSKEANALITKMTELFVAKLATETHSAS--SGKRIIKASDVAHCIHNRPQFAWLRPD 260          
BLAST of jgi.p|Trimin1|347825 vs. uniprot
Match: A0A7S2FZW8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FZW8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 4.150e-12
Identity = 52/172 (30.23%), Postives = 89/172 (51.74%), Query Frame = 0
Query:  140 KKIKRAQSAWMFFLADKRDEVVKANPGARIGAVVKECSGIWAAMPPEEKQVYEAQAAEDKARLQRELQAAGLTKLPSAGNRSGEERDLPPDATTTILLPLSRVRKTAKMDAEVKSINADGLATIAKATELFIATLAKRSWGAARQSGRRNLRVTDIAQCVDADGALYFLREE 311
            KK+KR Q A+  F    R+ V    PG  +    K  +  W ++   EK  +  + A++    QRE+       +  A +  G++      +   +++P+ RVR+T K+D +VK+I  +  A +AKATE F+A +A+ S+  +  SGRR L+  DI  CV+      +LR++
Sbjct:    3 KKLKRNQEAFTSFCHSYRETV----PGLSVLDQSKALADRWRSLSEAEKDSFMPKVADENQGHQREIIDQSTLPVEPAKSSKGKKDS----SAFEMVIPVGRVRRTCKLDPDVKNITKEATALVAKATERFLAQIAEESFKISSLSGRRTLKTDDIRDCVNRLPQYEWLRDD 166          
BLAST of jgi.p|Trimin1|347825 vs. uniprot
Match: A0A1E7FIV6_9STRA (HMG box domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FIV6_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.440e-8
Identity = 47/177 (26.55%), Postives = 89/177 (50.28%), Query Frame = 0
Query:  140 KKIKRAQSAWMFFLADKRDEVVKANPGAR-IGAVVKECSGIWAAMPPEEKQVYEAQAAEDKARLQRELQAAGLTKLPS-AGNRSGEERDLPPDATTTILLPLSRVRKTAKMDAEVKSINADGLATIAKATELFIATLAKRSWGAARQSGRRNLRVTDIAQCVDADGA--LYFLREEL 312
            + +KR+++A+  F    R  + K  P  + +  + K     W  +  EEK+ ++  A+++K   + +L+A           N +     L  D   +++ P++R+ K AK+D ++ +I+ +G+  I K+TELF++ L   S   A QS RR +  TDI Q   +       FL+E++
Sbjct:  118 RPMKRSRTAYFIFADHMRPSIRKEFPDEKGVATMAKRIGHKWKEISIEEKEKFQLIASKEKEIYKEQLEAYKKQMGDDYVENINQSSSSLSSDHPNSLIFPIARISKIAKLDPDINAISKEGINLIVKSTELFLSKLGTDSMKVASQSNRRTIYSTDIKQICSSGQKQEFLFLKEDI 294          
BLAST of jgi.p|Trimin1|347825 vs. uniprot
Match: A0A166GYV5_9AGAM (HMG box domain-containing protein n=1 Tax=Peniophora sp. CONT TaxID=1314672 RepID=A0A166GYV5_9AGAM)

HSP 1 Score: 58.9 bits (141), Expect = 5.050e-7
Identity = 34/84 (40.48%), Postives = 45/84 (53.57%), Query Frame = 0
Query:  143 KRAQSAWMFFLADKRDEVVKANPGARIGAVVKECSGIWAAMPPEEKQVYEAQAAEDKARLQRELQAAGLTKLPSAGNRSGEERD 226
            KR  SA+MFF  D R++V K +P A  G + K   G W  M  ++K+ Y  QAAEDKAR +RE +     K  S      E+ D
Sbjct:   63 KRGLSAYMFFSQDHREQVKKDHPDASFGELGKILGGKWKEMDEDDKKPYAKQAAEDKARYEREKEEYEAGKAASGSGEEAEDDD 146          
BLAST of jgi.p|Trimin1|347825 vs. uniprot
Match: A0A5E3X9L3_9AGAM (HMG box domain-containing protein n=1 Tax=Peniophora sp. CBMAI 1063 TaxID=718367 RepID=A0A5E3X9L3_9AGAM)

HSP 1 Score: 57.8 bits (138), Expect = 6.680e-7
Identity = 34/84 (40.48%), Postives = 45/84 (53.57%), Query Frame = 0
Query:  143 KRAQSAWMFFLADKRDEVVKANPGARIGAVVKECSGIWAAMPPEEKQVYEAQAAEDKARLQRELQAAGLTKLPSAGNRSGEERD 226
            KR  SA+MFF  D R++V K +P A  G + K   G W  M  ++K+ Y  QAAEDKAR +RE +     K  S      E+ D
Sbjct:   33 KRGLSAYMFFSQDHREQVKKDHPDASFGELGKILGGKWKEMDDDDKKPYIKQAAEDKARYEREKEEYESGKAASGSGEEAEDDD 116          
BLAST of jgi.p|Trimin1|347825 vs. uniprot
Match: A0A7R9A069_9CRUS (Hypothetical protein (Fragment) n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9A069_9CRUS)

HSP 1 Score: 58.2 bits (139), Expect = 2.940e-6
Identity = 38/85 (44.71%), Postives = 48/85 (56.47%), Query Frame = 0
Query:  135 ASEPAKKIKRAQSAWMFFLADKRDEVVKANPGARIGAVVKECSGIWAAMPPEEKQVYEAQAAEDKARLQRELQAAGLTKLPSAGN 219
            A +PA   KRA SA+ +F AD+R +V   NP   +G V KE    WA   PE K  YEA AA+DK R +RE+ A    K P A +
Sbjct:  109 AKDPAAP-KRALSAFFWFCADERPKVRALNPDYAVGDVAKELGKRWADATPEVKSKYEAMAAKDKGRYEREMTA--YRKKPKANS 190          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347825 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CK92_9STRA2.480e-178100.00HMG box domain-containing protein n=1 Tax=Tribonem... [more]
A0A6U3YH94_9STRA1.300e-2234.97Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S0C498_9STRA1.360e-1828.83Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A448Z0U5_9STRA5.610e-1628.18HMG box domain-containing protein n=1 Tax=Pseudo-n... [more]
A0A7S3JX96_9STRA1.070e-1432.95Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2FZW8_9STRA4.150e-1230.23Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1E7FIV6_9STRA1.440e-826.55HMG box domain-containing protein n=1 Tax=Fragilar... [more]
A0A166GYV5_9AGAM5.050e-740.48HMG box domain-containing protein n=1 Tax=Peniopho... [more]
A0A5E3X9L3_9AGAM6.680e-740.48HMG box domain-containing protein n=1 Tax=Peniopho... [more]
A0A7R9A069_9CRUS2.940e-644.71Hypothetical protein (Fragment) n=1 Tax=Darwinula ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 37..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..144
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 208..227
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..95
NoneNo IPR availablePANTHERPTHR10252:SF118SUBFAMILY NOT NAMEDcoord: 34..321
NoneNo IPR availablePANTHERPTHR10252HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATEDcoord: 34..321
NoneNo IPR availableCDDcd00084HMG-boxcoord: 142..206
e-value: 5.1691E-18
score: 75.3479
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 141..211
e-value: 2.7E-18
score: 76.8
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 142..207
e-value: 1.5E-17
score: 63.7
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 142..210
score: 13.202126
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10High mobility group box domaincoord: 126..214
e-value: 9.5E-19
score: 69.6
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 138..207
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 227..312
e-value: 5.8E-18
score: 67.1
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 223..311
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 236..299
e-value: 3.8E-9
score: 36.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_16contigContig_16:610594..616831 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347825mRNA_2986Tribonema minus UTEX_B_3156 mRNAContig_16 610594..616844 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|347825|estExt_Genemark1.C_Ctg_160076 ID=Trimin1|347825|estExt_Genemark1.C_Ctg_160076|Name=jgi.p|Trimin1|347825|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=351bp
MLDDLEALEDSQQHSQLSSGTKRKLDDYQSVNAETPADEHEETGQEENEQ
QEDTQEQQQTNGSHADDDGDDREDEAAPASDAEGEEEEADADGGDPHETG
DDPAADADEEAEAGTDGEAGDGEAEAEAEEDSAAASEPAKKIKRAQSAWM
FFLADKRDEVVKANPGARIGAVVKECSGIWAAMPPEEKQVYEAQAAEDKA
RLQRELQAAGLTKLPSAGNRSGEERDLPPDATTTILLPLSRVRKTAKMDA
EVKSINADGLATIAKATELFIATLAKRSWGAARQSGRRNLRVTDIAQCVD
ADGALYFLREELATMAAASSRKAAAAPPAKKAALAAGPGSKSITSFFART
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
IPR036910HMG_box_dom_sf
IPR009072Histone-fold
IPR003958CBFA_NFYB_domain