Trimin1|347783|estExt_Genemark1.C_Ctg_160015 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|347783
Unique NameTrimin1|347783|estExt_Genemark1.C_Ctg_160015
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length336
Homology
BLAST of jgi.p|Trimin1|347783 vs. uniprot
Match: A0A836CM55_9STRA (Ribosome recycling factor domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM55_9STRA)

HSP 1 Score: 620 bits (1599), Expect = 1.330e-223
Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 0
Query:    1 MRASAARAVATRLRHVSGLAGRALAADAAAATHLNSKGFTTVAAVSAAPHLPATRIVDRKHRMGFAMEPQQPALLLVRRFKHGSLGKKGKKAGKTSRAELYNARPAAAAESIPLDDESSVSDAEPEESEEEEPADQDYATVDDCAPLDALSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKHKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDILSA 335
            MRASAARAVATRLRHVSGLAGRALAADAAAATHLNSKGFTTVAAVSAAPHLPATRIVDRKHRMGFAMEPQQPALLLVRRFKHGSLGKKGKKAGKTSRAELYNARPAAAAESIPLDDESSVSDAEPEESEEEEPADQDYATVDDCAPLDALSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKHKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDILSA
Sbjct:    1 MRASAARAVATRLRHVSGLAGRALAADAAAATHLNSKGFTTVAAVSAAPHLPATRIVDRKHRMGFAMEPQQPALLLVRRFKHGSLGKKGKKAGKTSRAELYNARPAAAAESIPLDDESSVSDAEPEESEEEEPADQDYATVDDCAPLDALSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKHKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDILSA 335          
BLAST of jgi.p|Trimin1|347783 vs. uniprot
Match: A0A6H5K1Z6_9PHAE (RRF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1Z6_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 5.120e-43
Identity = 93/195 (47.69%), Postives = 125/195 (64.10%), Query Frame = 0
Query:  140 TVDDCAPLDALSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKHKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDILS 334
            ++DD A +    AR D+VL+GL ++   LRGG+ DP M D++ V SYG    L+SVAQ S KGPQL++L+ YDP    A+  AVR+ GM LNP  +G             V VPIPK + E+RE++ KVA K  EK+KV +RGIRHK+L+++KK K +F EDDVH R KEID      EA  A+ L+ KK +IL+
Sbjct:  114 SLDDIAGIPESKARFDKVLQGLTRNFQGLRGGKTDPGMLDNVKVESYGSMTNLASVAQASMKGPQLIILSVYDPGMTKAIEDAVRECGMGLNPYSEGQGQ----------VHVPIPKPTKESREAVAKVAAKHAEKSKVVVRGIRHKILDQIKKKKDSFPEDDVHMRIKEIDKCTKDAEAGIASMLEKKKAEILT 298          
BLAST of jgi.p|Trimin1|347783 vs. uniprot
Match: A0A6V1LRG3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1LRG3_HETAK)

HSP 1 Score: 133 bits (335), Expect = 2.820e-33
Identity = 82/191 (42.93%), Postives = 112/191 (58.64%), Query Frame = 0
Query:  145 APLDALSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKHKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDILSA 335
            A L+ +  ++ R ++ L KDL  LR GR DPAMFDHL V +YGQ  PLS+VA V+ +GPQLLV+  YDP    AV  A+R+ GM LNPQ    +GGA        + VP+PK S E RE L ++A +  EK K ++R  R   ++  KK  A   ED+  R  KEID    A     +  +D K+K++L+A
Sbjct:   95 ADLEQVDQKMGRYIQALDKDLRTLRAGRADPAMFDHLQVDAYGQSAPLSAVADVAPRGPQLLVVNVYDPQLKGAVDTAIRECGMGLNPQ--ALEGGA--------LSVPVPKTSKEKREKLARMAKQQGEKTKQNVRNARRSAIDETKK--AGLPEDESKRLVKEIDALCDAKLKAVSDLIDGKQKELLNA 273          
BLAST of jgi.p|Trimin1|347783 vs. uniprot
Match: A0A7S1C1H7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C1H7_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.040e-27
Identity = 72/186 (38.71%), Postives = 106/186 (56.99%), Query Frame = 0
Query:  149 ALSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKHKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDILS 334
            A +A +D  ++ L+++ A LR G   P+M DH+ V +YG   PL  +AQV+A  P L+V   +DP+T+ AV  A+R+SG+NLNPQ DG             V VPIPK + ETRES  K+A K  E+ K+ +R +R + +  +K+ +   SEDDV R  KE+     A      A    KK+ I++
Sbjct:   24 AWAADMDSHVDWLRREYATLRVGAATPSMLDHVMVDAYGGTVPLPQLAQVAAPSPNLIVCNVFDPSTSSAVAEAIRNSGLNLNPQEDG-----------AVVKVPIPKTTRETRESTAKIAAKLAEETKLAVRRVRQRAMAVIKE-QTGVSEDDVFRLGKEVQAATDAAVDAVTAEFTKKKESIMN 197          
BLAST of jgi.p|Trimin1|347783 vs. uniprot
Match: A0A437MJH9_9PROT (Ribosome-recycling factor n=2 Tax=Rhodovarius TaxID=268408 RepID=A0A437MJH9_9PROT)

HSP 1 Score: 112 bits (280), Expect = 3.380e-26
Identity = 77/198 (38.89%), Postives = 102/198 (51.52%), Query Frame = 0
Query:  139 ATVDDCAPLDALSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLK--KHKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDILS 334
            A  D  A  + L  R+D  +E LKK+   LR GR  PA+ + + V  YG   PL+ VA VS  GP LL +  YD     AV +A+RDSG+NLNPQ +G             + VP+P ++ E R  L K A K  E AK+ +R +R   +E+ +  K K+  SEDD  R  KE+ T       K  AA   K KDI S
Sbjct:    3 APADPKALKEDLRRRMDSTMETLKKEFQGLRTGRASPALLEPIRVEIYGAVSPLNQVANVSVGGPGLLNVQVYDRGQVKAVEIAIRDSGLNLNPQTEGQT-----------IRVPLPPLTTERRNELSKQAAKYAEGAKIAVRNVRRDGMEQAQGWKKKSEISEDDAKRLEKEVQTLTDDYVKKVDAAFAEKDKDIKS 189          
BLAST of jgi.p|Trimin1|347783 vs. uniprot
Match: UPI001CFEA812 (ribosome recycling factor n=1 Tax=Roseicella sp. GB24 TaxID=2883479 RepID=UPI001CFEA812)

HSP 1 Score: 112 bits (279), Expect = 4.730e-26
Identity = 65/157 (41.40%), Postives = 93/157 (59.24%), Query Frame = 0
Query:  150 LSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKH----KANFSEDD 302
            L+ R+D  +E LKK+ + LR GR  PA+ + + V +YGQE PLS VA VS  GP +L +  +D +   AV VA+RDSG+ LNPQ +G             + VP+P ++ E R  L+K A+K  E AKV +RG+R   +E++K      KA  S+DD
Sbjct:   12 LTRRMDGAIEMLKKEFSGLRAGRASPALLEPVRVEAYGQEQPLSQVANVSVSGPAMLSVQVWDKSVVKAVEVAIRDSGLGLNPQTEGQT-----------LRVPLPPLTQERRNELIKAAHKYAEGAKVAVRGVRRDGMEQIKAQEKDKKAPISQDD 157          
BLAST of jgi.p|Trimin1|347783 vs. uniprot
Match: A0A7S2EQG4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EQG4_TRICV)

HSP 1 Score: 115 bits (287), Expect = 5.400e-26
Identity = 77/191 (40.31%), Postives = 104/191 (54.45%), Query Frame = 0
Query:  148 DALSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKHKAN----FSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDILS 334
            D + +R+DRV+    +    +RG    P +FD + V +YG   PLSSVAQV  +GP   +L+C+DP TA AV  AVRDSGM  NP++D   G  +         VPIPK+S ETR SLVK   KA E A+  +R IR    + +KK K       S+DD  R  KEID        +   A + KK D+++
Sbjct:  131 DDVKSRMDRVVSATSESFRSVRGSEPTPELFDSIPVRAYGTLAPLSSVAQVVIQGPTRALLSCFDPETAGAVRDAVRDSGMGFNPRIDETGGTVE---------VPIPKVSMETRLSLVKQLGKAAEAARQRIRRIRRAAQDVVKKGKDGKLDGVSKDDAFRVAKEIDAVTEKAIEELNDAYERKKDDVMA 312          
BLAST of jgi.p|Trimin1|347783 vs. uniprot
Match: UPI001A067563 (Ribosome recycling factor n=1 Tax=Acetobacteraceae bacterium H6797 TaxID=2571211 RepID=UPI001A067563)

HSP 1 Score: 111 bits (278), Expect = 6.270e-26
Identity = 73/185 (39.46%), Postives = 100/185 (54.05%), Query Frame = 0
Query:  150 LSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLK--KHKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDI 332
            LS R+D  LE LKK+ + LR GR  PA+ + + V +YG   PLS VA VS  GP +L +  +D +   AV VA+RDSG+ LNPQ +G           T + VP+P ++ E R  L K A K  E AKV  RG+R   +E +K  + K+   +DD  +   E+     A      AAL  K+KDI
Sbjct:   12 LSRRMDGALETLKKEFSGLRTGRASPALLEPIRVEAYGSNQPLSQVANVSVSGPSMLSVQVWDKSVTKAVEVAIRDSGLGLNPQAEG-----------TVIRVPLPPLTTERRNELAKTAAKYAEAAKVAARGVRRDGMETIKGWEKKSEVGKDDAAKWSDEVQKLTDATIKAIDAALAEKEKDI 185          
BLAST of jgi.p|Trimin1|347783 vs. uniprot
Match: UPI001BACEF9D (ribosome recycling factor n=2 Tax=Roseomonas TaxID=125216 RepID=UPI001BACEF9D)

HSP 1 Score: 108 bits (271), Expect = 6.850e-25
Identity = 70/187 (37.43%), Postives = 102/187 (54.55%), Query Frame = 0
Query:  150 LSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKK----HKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDI 332
            L+ R+D  +E L+K+ A LR GR  PA+ + + V +YG   PL+ VA +S  GP LLV+  +D +   AV VA+RDSG+ LNPQ +G             + VP+P ++ E R  LVK A+K  E ++V +RG+R   +ER+K      KA  SED+  R   E+         +    L  K+KDI
Sbjct:   12 LTRRMDGAIETLRKEFAGLRTGRASPALLEPVRVEAYGGNSPLNQVANISVGGPGLLVVQVFDRSLTKAVEVAIRDSGLGLNPQAEGQV-----------IRVPLPPLTQERRNDLVKTAHKYAEASRVAIRGVRRDGMERVKAMTADKKAPISEDEGKRTQDEVQKLTDQYIKQVDTLLAEKEKDI 187          
BLAST of jgi.p|Trimin1|347783 vs. uniprot
Match: UPI001BA5A89B (Ribosome recycling factor n=1 Tax=Leptolyngbya sp. 15MV TaxID=2819933 RepID=UPI001BA5A89B)

HSP 1 Score: 108 bits (270), Expect = 9.570e-25
Identity = 72/187 (38.50%), Postives = 100/187 (53.48%), Query Frame = 0
Query:  150 LSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKK----HKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDI 332
            L  R+D  +E LKK+ A LR GR  PA+ + + V +YG   PL+ VA +S  GP LL +  +D +      VA+RDSG+ LNPQ +G             + VP+P ++ E R  L K A K TE A+V +RG+R   +E +K      KA  S+DDV R   E+     A   +  AAL  K+KDI
Sbjct:   12 LQRRMDGAMETLKKEFAGLRTGRASPALLEPIRVEAYGTVQPLNQVANISIAGPGLLSVQVWDKSVVKHAEVAIRDSGLGLNPQTEGQV-----------IRVPLPPLTQERRNELAKTAAKYTEAARVAVRGVRRDGMETVKAWEKDKKAEASQDDVKRWSDEVQKMTDAHIKQIDAALAEKEKDI 187          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347783 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CM55_9STRA1.330e-223100.00Ribosome recycling factor domain-containing protei... [more]
A0A6H5K1Z6_9PHAE5.120e-4347.69RRF domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6V1LRG3_HETAK2.820e-3342.93Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1C1H7_9STRA2.040e-2738.71Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A437MJH9_9PROT3.380e-2638.89Ribosome-recycling factor n=2 Tax=Rhodovarius TaxI... [more]
UPI001CFEA8124.730e-2641.40ribosome recycling factor n=1 Tax=Roseicella sp. G... [more]
A0A7S2EQG4_TRICV5.400e-2640.31Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
UPI001A0675636.270e-2639.46Ribosome recycling factor n=1 Tax=Acetobacteraceae... [more]
UPI001BACEF9D6.850e-2537.43ribosome recycling factor n=2 Tax=Roseomonas TaxID... [more]
UPI001BA5A89B9.570e-2538.50Ribosome recycling factor n=1 Tax=Leptolyngbya sp.... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.1360.40coord: 172..257
e-value: 4.5E-45
score: 155.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..138
IPR023584Ribosome recycling factor domainPFAMPF01765RRFcoord: 161..333
e-value: 7.1E-43
score: 146.3
IPR036191RRF superfamilyGENE3D1.10.132.20coord: 153..332
e-value: 4.5E-45
score: 155.2
IPR036191RRF superfamilySUPERFAMILY55194Ribosome recycling factor, RRFcoord: 148..333
IPR002661Ribosome recycling factorPANTHERPTHR20982RIBOSOME RECYCLING FACTORcoord: 82..333

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_16contigContig_16:101817..105962 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347783mRNA_2925Tribonema minus UTEX_B_3156 mRNAContig_16 101789..106379 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|347783|estExt_Genemark1.C_Ctg_160015 ID=Trimin1|347783|estExt_Genemark1.C_Ctg_160015|Name=jgi.p|Trimin1|347783|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=336bp
MRASAARAVATRLRHVSGLAGRALAADAAAATHLNSKGFTTVAAVSAAPH
LPATRIVDRKHRMGFAMEPQQPALLLVRRFKHGSLGKKGKKAGKTSRAEL
YNARPAAAAESIPLDDESSVSDAEPEESEEEEPADQDYATVDDCAPLDAL
SARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSA
KGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPV
LVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKHKANFSE
DDVHRRHKEIDTKIAAMEAKCAAALDAKKKDILSA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023584Ribosome_recyc_fac_dom
IPR036191RRF_sf
IPR002661Ribosome_recyc_fac