mRNA_3056 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161157
Unique NamemRNA_3056
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|161157 vs. uniprot
Match: A0A835Z7S2_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7S2_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.440e-40
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 MQCGVCLMDYRPGDELCRLPCPSQHVYHATCITMWLDAHVTCPYCKFNLIQQAHELV 171
            MQCGVCLMDYRPGDELCRLPCPSQHVYHATCITMWLDAHVTCPYCKFNLIQQAHELV
Sbjct:    1 MQCGVCLMDYRPGDELCRLPCPSQHVYHATCITMWLDAHVTCPYCKFNLIQQAHELV 57
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BLAST of jgi.p|Trimin1|161157 vs. uniprot
Match: C1N1W6_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N1W6_MICPC)

HSP 1 Score: 62.0 bits (149), Expect = 1.240e-11
Identity = 26/47 (55.32%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:    7 CGVCLMDYRPGDELCRLPCPSQHVYHATCITMWLDAHVTCPYCKFNL 147
            C VC+ D   GD L  LPC   H YHA CI  WL+AH TCP CKF++
Sbjct:    6 CPVCMADVEDGDVLRTLPC--LHAYHAACIDRWLEAHKTCPVCKFDV 50
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BLAST of jgi.p|Trimin1|161157 vs. uniprot
Match: A9V2Z7_MONBE (Predicted protein (Fragment) n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V2Z7_MONBE)

HSP 1 Score: 65.1 bits (157), Expect = 7.200e-11
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    7 CGVCLMDYRPGDELCRLPCPSQHVYHATCITMWLDAHVTCPYCKFNLIQ 153
            C VCL D  PG  + +LPC  QH++H  CI  WL+AH TCP CKFN+++
Sbjct:  291 CAVCLDDLEPGVMIRQLPC--QHLFHKDCIDPWLEAHYTCPLCKFNVVR 337
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BLAST of jgi.p|Trimin1|161157 vs. uniprot
Match: A0A4V1IU11_9FUNG (RING-type domain-containing protein (Fragment) n=1 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4V1IU11_9FUNG)

HSP 1 Score: 60.8 bits (146), Expect = 9.760e-11
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    4 QCGVCLMDYRPGDELCRLPCPSQHVYHATCITMWLDAHVTCPYCK 138
            +C +CL DY  G+ L  LPC  +HV+H TCI+MWL +H  CP C+
Sbjct:   50 RCSICLEDYTRGERLITLPC--RHVFHKTCISMWLQSHKECPICR 92
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BLAST of jgi.p|Trimin1|161157 vs. uniprot
Match: A0A0N5A9D5_9BILA (RING-type domain-containing protein n=1 Tax=Syphacia muris TaxID=451379 RepID=A0A0N5A9D5_9BILA)

HSP 1 Score: 60.1 bits (144), Expect = 3.720e-9
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    7 CGVCLMDYRPGDELCRLPCPSQHVYHATCITMWLDAHVTCPYCKFNLIQQAHEL 168
            C VC+  Y+ GD +  LPC  +HV+H TC+ +WL  H TCP CK ++++  H L
Sbjct:  170 CPVCIDPYQTGDIIRSLPC--KHVFHKTCVDLWLLEHRTCPMCKSDILKVTHVL 221
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BLAST of jgi.p|Trimin1|161157 vs. uniprot
Match: A0A7J9FGU8_9ROSI (RING-type domain-containing protein (Fragment) n=1 Tax=Gossypium trilobum TaxID=34281 RepID=A0A7J9FGU8_9ROSI)

HSP 1 Score: 58.5 bits (140), Expect = 7.310e-9
Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 MQCGVCLMDYRPGDELCRLPCPSQHVYHATCITMWLDAHVTCPYCKFNL 147
            ++C VCL  + P DEL RL    +H +HA C+  WLDAH TCP C++ +
Sbjct:  145 LECAVCLTRFEP-DELLRLLPKCKHAFHAECVDTWLDAHSTCPLCRYRV 192
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BLAST of jgi.p|Trimin1|161157 vs. uniprot
Match: A0A5A7P8N4_STRAF (RING/U-box superfamily protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7P8N4_STRAF)

HSP 1 Score: 57.8 bits (138), Expect = 1.290e-8
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:    4 QCGVCLMDYRPGDELCRLPCPSQHVYHATCITMWLDAHVTCPYCKFNL 147
            +C VCL DY   D LC +P    H++H TCI +WL  H TCP C+ +L
Sbjct:   85 RCTVCLADYHEEDTLCIIPVCG-HMFHTTCIGIWLQQHATCPVCRVSL 131
[Close]
BLAST of jgi.p|Trimin1|161157 vs. uniprot
Match: A0A4D8YKX4_SALSN (E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 n=3 Tax=Salvia TaxID=21880 RepID=A0A4D8YKX4_SALSN)

HSP 1 Score: 57.8 bits (138), Expect = 1.360e-8
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    4 QCGVCLMDYRPGDELCRLPCPSQHVYHATCITMWLDAHVTCPYCKFNL 147
            +C VCL DY   D LC LP   +H++HATCI +WL    TCP C+ +L
Sbjct:   88 RCTVCLSDYHEEDTLCVLPV-CRHLFHATCIGIWLQQRSTCPVCRISL 134
[Close]
BLAST of jgi.p|Trimin1|161157 vs. uniprot
Match: A0A0D2SJD8_GOSRA (RING-type domain-containing protein n=20 Tax=Gossypium TaxID=3633 RepID=A0A0D2SJD8_GOSRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.370e-8
Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 MQCGVCLMDYRPGDELCRLPCPSQHVYHATCITMWLDAHVTCPYCKFNL 147
            ++C VCL  + P DEL RL    +H +HA C+  WLDAH TCP C++ +
Sbjct:  146 LECAVCLTRFEP-DELLRLLPKCKHAFHAECVDTWLDAHSTCPLCRYRV 193
[Close]
BLAST of jgi.p|Trimin1|161157 vs. uniprot
Match: UPI000E702EA3 (RING-H2 finger protein ATL43-like n=2 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E702EA3)

HSP 1 Score: 58.5 bits (140), Expect = 1.460e-8
Identity = 22/49 (44.90%), Postives = 29/49 (59.18%), Query Frame = 1 
Query:    1 MQCGVCLMDYRPGDELCRLPCPSQHVYHATCITMWLDAHVTCPYCKFNL 147
            M+C VCL  Y    E+ RL    +H +H  C+  WLDAH TCP C+F +
Sbjct:  160 MECAVCLSKYEDEKEVLRLLPKCKHAFHVDCVDTWLDAHSTCPLCRFRV 208
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161157 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7S2_9STRA1.440e-40100.00RING-type domain-containing protein n=1 Tax=Tribon... [more]
C1N1W6_MICPC1.240e-1155.32Predicted protein (Fragment) n=1 Tax=Micromonas pu... [more]
A9V2Z7_MONBE7.200e-1153.06Predicted protein (Fragment) n=1 Tax=Monosiga brev... [more]
A0A4V1IU11_9FUNG9.760e-1151.11RING-type domain-containing protein (Fragment) n=1... [more]
A0A0N5A9D5_9BILA3.720e-944.44RING-type domain-containing protein n=1 Tax=Syphac... [more]
A0A7J9FGU8_9ROSI7.310e-946.94RING-type domain-containing protein (Fragment) n=1... [more]
A0A5A7P8N4_STRAF1.290e-847.92RING/U-box superfamily protein n=1 Tax=Striga asia... [more]
A0A4D8YKX4_SALSN1.360e-850.00E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 n=3... [more]
A0A0D2SJD8_GOSRA1.370e-846.94RING-type domain-containing protein n=20 Tax=Gossy... [more]
UPI000E702EA31.460e-844.90RING-H2 finger protein ATL43-like n=2 Tax=Papaver ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_16contigContig_16:1182913..1183086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161157|e_gw1.16.192.1
BRITEko00000,ko01000,ko03041
KEGG koko:K13148
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0022414,GO:0030163,GO:0032446,GO:0032501,GO:0032502,GO:0036211,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0051603,GO:0061458,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
DescriptionRING-H2 zinc finger domain
COG categoryO
Max annot lvl35493|Streptophyta
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,37SBP@33090|Viridiplantae,3G7QP@35493|Streptophyta,3KNDU@4447|Liliopsida,3I6FV@38820|Poales
Evalue7.97e-12
Seed ortholog15368.BRADI3G59936.1
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId161479
TrackFilteredModels1
ProteinId161157
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161157gene_3056Tribonema minus UTEX_B_3156 geneContig_16 1182913..1183086 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3056_1exon_3056_1Tribonema minus UTEX_B_3156 exonContig_16 1182913..1183086 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3056CDS_3056Tribonema minus UTEX_B_3156 CDSContig_16 1182913..1183086 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161157Trimin1|161157|e_gw1.16.192.1Tribonema minus UTEX_B_3156 polypeptideContig_16 1182913..1183086 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3056 ID=mRNA_3056|Name=jgi.p|Trimin1|161157|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=174bp|location=Sequence derived from alignment at Contig_16:1182913..1183086- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTGTGGCGTATGTTTGATGGACTATCGGCCAGGGGACGAGCTGTG
CCGACTGCCATGCCCAAGTCAGCATGTCTATCATGCAACCTGCATTACAA
TGTGGCTGGACGCGCATGTCACCTGTCCATACTGCAAGTTCAACTTGATA
CAGCAAGCACATGAGCTTGTATAG
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protein sequence of jgi.p|Trimin1|161157

>Trimin1|161157|e_gw1.16.192.1 ID=Trimin1|161157|e_gw1.16.192.1|Name=jgi.p|Trimin1|161157|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=58bp
MQCGVCLMDYRPGDELCRLPCPSQHVYHATCITMWLDAHVTCPYCKFNLI
QQAHELV*
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mRNA from alignment at Contig_16:1182913..1183086-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3056 ID=mRNA_3056|Name=jgi.p|Trimin1|161157|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=174bp|location=Sequence derived from alignment at Contig_16:1182913..1183086- (Tribonema minus UTEX_B_3156 )
ATGCAGTGTGGCGTATGTTTGATGGACTATCGGCCAGGGGACGAGCTGTG
CCGACTGCCATGCCCAAGTCAGCATGTCTATCATGCAACCTGCATTACAA
TGTGGCTGGACGCGCATGTCACCTGTCCATACTGCAAGTTCAACTTGATA
CAGCAAGCACATGAGCTTGTATAG
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Coding sequence (CDS) from alignment at Contig_16:1182913..1183086-

>mRNA_3056 ID=mRNA_3056|Name=jgi.p|Trimin1|161157|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=174bp|location=Sequence derived from alignment at Contig_16:1182913..1183086- (Tribonema minus UTEX_B_3156 )
ATGCAGTGTGGCGTATGTTTGATGGACTATCGGCCAGGGGACGAGCTGTG
CCGACTGCCATGCCCAAGTCAGCATGTCTATCATGCAACCTGCATTACAA
TGTGGCTGGACGCGCATGTCACCTGTCCATACTGCAAGTTCAACTTGATA
CAGCAAGCACATGAGCTTGTATAG
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