Trimin1|353358|estExt_Genemark1.C_Ctg_1590020 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353358
Unique NameTrimin1|353358|estExt_Genemark1.C_Ctg_1590020
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length278
Homology
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BLAST of jgi.p|Trimin1|353358 vs. uniprot
Match: A0A835Z7X5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7X5_9STRA)

HSP 1 Score: 437 bits (1124), Expect = 3.650e-153
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0 
Query:    1 MESVAPLDVPVPGSYLIAHPMVADECFKRSVVLVVEVDDYGTRGVVVNCPTPTQLRARVRAVPHAADWQDAESARALLMHHLGDNRVYLGGPVRQVLMLHRYADVGGRLICGEGGXXXXXXXXXXXXXXXXXXXXXXXLPLPPLAFGTPXXXXXXXXXXXXXXXXXXXXXXERGAPADCIHVGGDLMKANALLAARKAAPSDFEIVVGVAAWEPGMLEAELGRGAWVVARGAPSLAVGARAELWGDMLAALGGAHAEMARVPPEADEAARRDERQAA 277
            MESVAPLDVPVPGSYLIAHPMVADECFKRSVVLVVEVDDYGTRGVVVNCPTPTQLRARVRAVPHAADWQDAESARALLMHHLGDNRVYLGGPVRQVLMLHRYADVGGRLICGEGGXXXXXXXXXXXXXXXXXXXXXXXLPLPPLAFGTPXXXXXXXXXXXXXXXXXXXXXXERGAPADCIHVGGDLMKANALLAARKAAPSDFEIVVGVAAWEPGMLEAELGRGAWVVARGAPSLAVGARAELWGDMLAALGGAHAEMARVPPEADEAARRDERQAA
Sbjct:    1 MESVAPLDVPVPGSYLIAHPMVADECFKRSVVLVVEVDDYGTRGVVVNCPTPTQLRARVRAVPHAADWQDAESARALLMHHLGDNRVYLGGPVRQVLMLHRYADVGGRLICGEGGXXXXXXXXXXXXXXXXXXXXXXXLPLPPLAFGTPXXXXXXXXXXXXXXXXXXXXXXERGAPADCIHVGGDLMKANALLAARKAAPSDFEIVVGVAAWEPGMLEAELGRGAWVVARGAPSLAVGARAELWGDMLAALGGAHAEMARVPPEADEAARRDERQAA 277
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BLAST of jgi.p|Trimin1|353358 vs. uniprot
Match: D7FSC9_ECTSI (Putative transcriptional regulator n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSC9_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 3.120e-10
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 0 
Query:  184 GDLMKANALLAARKAAPSDFEIVVGVAAWEPGMLEAELGRGAWVVARGAPSLAVGARAELWGDMLAALGGAHAEMARVP 262
            G + KA  LL    A P+DF +VVG +AW+ G L+ EL  G W++A+   S A+    ++W DML A+GG +A MARVP
Sbjct:  359 GKMEKAAELLTKGAAKPADFSLVVGASAWDAGQLQGELNHGLWIMAKAPASFALAGGEDMWRDMLEAMGGPYAAMARVP 437
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353358 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z7X5_9STRA3.650e-153100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FSC9_ECTSI3.120e-1045.57Putative transcriptional regulator n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003774Protein of unknown function UPF0301PFAMPF02622DUF179coord: 20..252
e-value: 1.7E-22
score: 80.1
IPR003774Protein of unknown function UPF0301PANTHERPTHR30327UNCHARACTERIZED PROTEIN YQGEcoord: 12..238
NoneNo IPR availableGENE3D3.40.1740.10coord: 10..271
e-value: 3.3E-33
score: 116.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..176
NoneNo IPR availableSUPERFAMILY143456VC0467-likecoord: 10..104
NoneNo IPR availableSUPERFAMILY143456VC0467-likecoord: 195..261

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_159contigContig_159:123267..125094 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353358mRNA_13858Tribonema minus UTEX_B_3156 mRNAContig_159 122720..125974 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353358|estExt_Genemark1.C_Ctg_1590020 ID=Trimin1|353358|estExt_Genemark1.C_Ctg_1590020|Name=jgi.p|Trimin1|353358|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=278bp
MESVAPLDVPVPGSYLIAHPMVADECFKRSVVLVVEVDDYGTRGVVVNCP
TPTQLRARVRAVPHAADWQDAESARALLMHHLGDNRVYLGGPVRQVLMLH
RYADVGGRLICGEGGGGGGGGSDTSSSAPAEPAAASAQLPLPPLAFGTPP
PGGVGRRRRDRGSDGGGGGGGERGAPADCIHVGGDLMKANALLAARKAAP
SDFEIVVGVAAWEPGMLEAELGRGAWVVARGAPSLAVGARAELWGDMLAA
LGGAHAEMARVPPEADEAARRDERQAA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003774UPF0301