mRNA_13858 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353358
Unique NamemRNA_13858
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|353358 vs. uniprot
Match: A0A835Z7X5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7X5_9STRA)

HSP 1 Score: 433 bits (1114), Expect = 1.860e-146
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 3
Query:  453 MESVAPLDVPVPGSYLIAHPMVADECFKRSVVLVVEVDDYGTRGVVVNCPTPTQLRARVRAVPHAADWQDAESARALLMHHLGDNRVYLGGPVRQVLMLHRYADVGGRLICGEGGXXXXXXXXXXXXXXXXXXXXXXXLPLPPLAFGTPXXXXXXXXXXXXXXXXXXXXXXERGAPADCIHVGGDLMKANALLAARKAAPSDFEIVVGVAAWEPGMLEAELGRGAWVVARGAPSLAVGARAELWGDMLAALGGAHAEMARVPPEADEAARRDE 1271
            MESVAPLDVPVPGSYLIAHPMVADECFKRSVVLVVEVDDYGTRGVVVNCPTPTQLRARVRAVPHAADWQDAESARALLMHHLGDNRVYLGGPVRQVLMLHRYADVGGRLICGEGGXXXXXXXXXXXXXXXXXXXXXXXLPLPPLAFGTPXXXXXXXXXXXXXXXXXXXXXXERGAPADCIHVGGDLMKANALLAARKAAPSDFEIVVGVAAWEPGMLEAELGRGAWVVARGAPSLAVGARAELWGDMLAALGGAHAEMARVPPEADEAARRDE
Sbjct:    1 MESVAPLDVPVPGSYLIAHPMVADECFKRSVVLVVEVDDYGTRGVVVNCPTPTQLRARVRAVPHAADWQDAESARALLMHHLGDNRVYLGGPVRQVLMLHRYADVGGRLICGEGGXXXXXXXXXXXXXXXXXXXXXXXLPLPPLAFGTPXXXXXXXXXXXXXXXXXXXXXXERGAPADCIHVGGDLMKANALLAARKAAPSDFEIVVGVAAWEPGMLEAELGRGAWVVARGAPSLAVGARAELWGDMLAALGGAHAEMARVPPEADEAARRDE 273          
BLAST of jgi.p|Trimin1|353358 vs. uniprot
Match: D7FSC9_ECTSI (Putative transcriptional regulator n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSC9_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 3.800e-9
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 3
Query: 1002 GDLMKANALLAARKAAPSDFEIVVGVAAWEPGMLEAELGRGAWVVARGAPSLAVGARAELWGDMLAALGGAHAEMARVP 1238
            G + KA  LL    A P+DF +VVG +AW+ G L+ EL  G W++A+   S A+    ++W DML A+GG +A MARVP
Sbjct:  359 GKMEKAAELLTKGAAKPADFSLVVGASAWDAGQLQGELNHGLWIMAKAPASFALAGGEDMWRDMLEAMGGPYAAMARVP 437          
BLAST of jgi.p|Trimin1|353358 vs. uniprot
Match: A0A836CK35_9STRA (HNH endonuclease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK35_9STRA)

HSP 1 Score: 554 bits (1428), Expect = 3.210e-197
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 3
Query:  165 MSVRLLALVTVLALVMNSEAFSTRAAITYGVWRATSPMTMKQRSSGDFRVKQEECPGVAEGSAELELYDNTDREFRSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIEARLQDEQL 974
            MSVRLLALVTVLALVMNSEAFSTRAAITYGVWRATSPMTMKQRSSGDFRVKQEECPGVAEGSAELELYDNTDREFRSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIEARLQDEQL
Sbjct:    1 MSVRLLALVTVLALVMNSEAFSTRAAITYGVWRATSPMTMKQRSSGDFRVKQEECPGVAEGSAELELYDNTDREFRSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIEARLQDEQL 270          
BLAST of jgi.p|Trimin1|353358 vs. uniprot
Match: D8LRG1_ECTSI (HNH endonuclease family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG1_ECTSI)

HSP 1 Score: 253 bits (646), Expect = 8.650e-78
Identity = 119/185 (64.32%), Postives = 143/185 (77.30%), Query Frame = 3
Query:  396 LESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATH-DRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAI 947
            ++SCP LVLNADYQPLSYLPLSLW WQ+ IKAV+ ++VVVLAT+ DR VRS +V ++LPSVIALK +VN H   P FTRRNL+LRD +QC YC K F   +LSFDHV P+KLGG  +W NVVT+C RCNN K DCHP+ L  IGM L K P  PTF +LQ +ARRYPP  IH+TW +YLY++S I
Sbjct:  135 IDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFSEKVVVLATYGDRSVRSPSVVVQLPSVIALKEFVNNHRTHPPFTRRNLFLRDSHQCQYCQKYFAPHNLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCHPRDLKSIGMSLAKYPVTPTFSQLQAKARRYPPLEIHETWGDYLYFESEI 319          
BLAST of jgi.p|Trimin1|353358 vs. uniprot
Match: A0A7R9UEZ0_9STRA (Hypothetical protein n=4 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEZ0_9STRA)

HSP 1 Score: 236 bits (603), Expect = 4.940e-71
Identity = 125/242 (51.65%), Postives = 153/242 (63.22%), Query Frame = 3
Query:  255 VWRATSPMTMKQRSSGDFRVKQEECPGVAEGSA------------ELELYDNTDREFRSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATH-DRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDS 941
            VW  +S  + K +S       Q   PG  E S             E E+   + R F SL++CPALVLNADYQPLSY+PLSLW WQE IKAV + +V V+  + D  + + + E+ LPSVIALK YV    KVP+FTRRNLYLRD Y+CAYC++ F +  LS+DHV PR  GG TSW NVVTSC  CN  KG+ HP  L  IGMRL   P  PT Y+LQ QAR+YPP+L HKTW  +L Y +
Sbjct:   96 VWMTSSYRSKKGKSRSPDMF-QHYHPGSQEASKPFAAHSEMAKEIEAEVEKKSSRHFYSLDTCPALVLNADYQPLSYMPLSLWSWQETIKAVLLGKVSVVERYPDVKIHTIDQEIPLPSVIALKEYVKPDHKVPAFTRRNLYLRDNYRCAYCARYFYSQQLSYDHVLPRFYGGSTSWDNVVTSCTDCNGRKGNLHPSKLHEIGMRLLVQPKRPTSYQLQQQARKYPPRLKHKTWEMWLSYSA 336          
BLAST of jgi.p|Trimin1|353358 vs. uniprot
Match: A0A7S1XLE6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLE6_9STRA)

HSP 1 Score: 236 bits (602), Expect = 6.380e-71
Identity = 114/200 (57.00%), Postives = 142/200 (71.00%), Query Frame = 3
Query:  354 ELELYDNTDREFRSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATH-DRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIE 950
            E E+   +   F SL++CPALVLNADYQPLSY+PLSLW WQE IK+V + +V V+A + D ++ + + E+ LPSVIALK YV    K P+FTRRNLYLRD Y+CAYC++ F + +LS+DHV PR  GG T+W NVVT C  CN  KG+ HP  L  IGMRL K P  PT Y+LQ QAR+YPP+L H TW  +L Y SA E
Sbjct:  140 EAEVVRKSSEHFYSLDTCPALVLNADYQPLSYMPLSLWSWQETIKSVLLGKVNVVAHYNDIFIHTIDEEIPLPSVIALKDYVKPDHKTPAFTRRNLYLRDNYRCAYCARYFYSQELSYDHVMPRFYGGGTNWENVVTCCVDCNGRKGNVHPNKLQDIGMRLLKKPTKPTSYQLQQQARKYPPRLRHSTWESWLGYTSADE 339          
BLAST of jgi.p|Trimin1|353358 vs. uniprot
Match: A0A7S2S5X4_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5X4_9STRA)

HSP 1 Score: 237 bits (604), Expect = 1.410e-70
Identity = 107/194 (55.15%), Postives = 141/194 (72.68%), Query Frame = 3
Query:  387 FRSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIEARLQDE 968
            F +LE CP LVLNAD+QPLSY+PLS+W WQ+AIKAV+ +RVVV+A ++  VRSA+V +++PSVIALK YV Q    P+FTRRN++LRD Y C YC    Q   L+FDHV PR  GG TSW NVVT+CHRCNN K D  P+ L  +G+ L + P +P+ YELQ  AR++PPK++H TW +YL +D +   +  +E
Sbjct:  206 FNNLEQCPVLVLNADFQPLSYIPLSIWSWQDAIKAVFAERVVVVANYEHEVRSASVAVQVPSVIALKQYVPQARATPTFTRRNVFLRDSYCCQYCGTCAQTQHLTFDHVLPRSKGGDTSWNNVVTACHRCNNKKKDMMPQQLHHLGLSLLREPRVPSHYELQAAARKFPPKVMHHTWRDYLAWDESASKKRGEE 399          
BLAST of jgi.p|Trimin1|353358 vs. uniprot
Match: A0A2E4F2L9_9PROT (HNH endonuclease n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4F2L9_9PROT)

HSP 1 Score: 221 bits (562), Expect = 3.130e-67
Identity = 97/186 (52.15%), Postives = 141/186 (75.81%), Query Frame = 3
Query:  396 LESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIEA 953
            +++CPALVLNADY+PLSY PLSLW WQE +KAV++DRV ++A +++ VRS + +++LPSVI+LK YV  + + P+FTR N++LRDG+ C YC K F   DL+FDHV P+  GG T+WTNV+T+C  CN  KG+   + ++ +GM L   P +PT YELQN  RRYPP  +H++W+++LY+DS +++
Sbjct:    3 VDTCPALVLNADYRPLSYFPLSLWSWQETVKAVFLDRVHIVAEYEQEVRSPSWQMRLPSVISLKRYVQSNRR-PAFTRFNVFLRDGFTCQYCRKYFDTHDLTFDHVLPKSRGGFTNWTNVITACASCNLRKGN---RLMAEVGMHLVYMPRVPTVYELQNVGRRYPPNYLHESWSDFLYWDSELDS 184          
BLAST of jgi.p|Trimin1|353358 vs. uniprot
Match: A0A316G9X3_9RHOB (5-methylcytosine-specific restriction endonuclease McrA n=1 Tax=Silicimonas algicola TaxID=1826607 RepID=A0A316G9X3_9RHOB)

HSP 1 Score: 220 bits (560), Expect = 8.400e-67
Identity = 106/191 (55.50%), Postives = 137/191 (71.73%), Query Frame = 3
Query:  381 REFRSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIEA 953
            RE  SL + PALVLNADY+PLSY PLSLWPWQEA+KA W+DRV ++A +D  VRS + E+++PSV+ LK YV    +V +FTR NL+LRD ++C YC  +   GDL+FDHV PR  GG TSW NVV +C  CN  KG    KSLSR GM L +AP  P   EL+NQ R++PP  +H+TW ++LY+D+ +EA
Sbjct:   11 REPNSLRNHPALVLNADYRPLSYYPLSLWPWQEAVKAAWLDRVQIIAEYDEVVRSPSTEIRIPSVVVLKDYVKPQKRV-AFTRFNLFLRDEFRCQYCGAK---GDLTFDHVVPRARGGVTSWENVVAACSSCNLRKG---AKSLSRSGMSLLRAPSRPAAEELRNQGRKFPPNHLHETWLDFLYWDAELEA 194          
BLAST of jgi.p|Trimin1|353358 vs. uniprot
Match: A0A2W5BYX0_9PROT (HNH endonuclease n=1 Tax=Micavibrio aeruginosavorus TaxID=349221 RepID=A0A2W5BYX0_9PROT)

HSP 1 Score: 219 bits (558), Expect = 1.790e-66
Identity = 102/188 (54.26%), Postives = 134/188 (71.28%), Query Frame = 3
Query:  390 RSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIEA 953
            R+LE CPALVLNAD++PLSY PLS+WPWQEA+KA++ D V VL+ +DR VRS  +ELKLPSV+ALK YV    K P+FTR N++LRD + C YC + F+  DL+FDHV PR  GG TSWTN+VT+C  CN  KG   P+     GM     P  P  +ELQ + R++PP  +HK+W ++LY+DS +E+
Sbjct:    5 RTLEQCPALVLNADFRPLSYYPLSVWPWQEAVKALFRDSVTVLSEYDRVVRSPGLELKLPSVLALKEYVRADRK-PAFTRFNVFLRDEWHCQYCGEPFRTNDLTFDHVIPRSRGGKTSWTNIVTACRCCNTIKGHKLPRD---CGMFPITEPVQPDIFELQEKGRKFPPNFLHKSWGDFLYWDSELES 188          
BLAST of jgi.p|Trimin1|353358 vs. uniprot
Match: A0A1J4RGG8_9PROT (HNH endonuclease n=1 Tax=Alphaproteobacteria bacterium CG1_02_46_17 TaxID=1803508 RepID=A0A1J4RGG8_9PROT)

HSP 1 Score: 218 bits (556), Expect = 2.570e-66
Identity = 98/184 (53.26%), Postives = 134/184 (72.83%), Query Frame = 3
Query:  396 LESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAI 947
            LE CPAL+LNAD++PLSY PLS+WPWQEA+KA++ D VVV++ +DR VRS   ELKLPSV+ALK YV    + P+FTR N++LRD +QC YC+  F+  +L+FDHV PR  GG TSWTN+V SC  CN  KG   P+    I +R   +P  P+ YELQ++ R++PP  +H++W ++LY+DS +
Sbjct:    4 LERCPALILNADFRPLSYYPLSVWPWQEAVKAIFRDSVVVVSEYDRVVRSPQTELKLPSVLALKEYVPM-TRSPAFTRFNVFLRDAWQCQYCAGHFRTDELTFDHVVPRSRGGRTSWTNIVASCQSCNKQKGSDLPEECGMIPLR---SPRQPSIYELQDRGRKFPPNFLHQSWMDFLYWDSEL 183          
BLAST of jgi.p|Trimin1|353358 vs. uniprot
Match: UPI001CD5F9EA (HNH endonuclease n=1 Tax=Hasllibacter sp. MH4015 TaxID=2854029 RepID=UPI001CD5F9EA)

HSP 1 Score: 218 bits (555), Expect = 5.380e-66
Identity = 104/204 (50.98%), Postives = 143/204 (70.10%), Query Frame = 3
Query:  342 EGSAELELYDNTDREFRSLESCPALVLNADYQPLSYLPLSLWPWQEAIKAVWMDRVVVLATHDRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAIEA 953
            + ++E+E   +  RE  +L   PALVLNADY+PLSY PLSLWPWQEA+KAVW+DRV ++A +D YV S +  +++PSV+ L+ YV    +V +FTR NL+LRDG+ C YC  +   GDL+FDHV PR  GG TSW NVV +C RCN  KG    KSL + G+ L +AP  P   EL+N+ R++PP  +H++W ++LY+DS +EA
Sbjct:    2 QATSEIEFRTSFVREPGALRHNPALVLNADYRPLSYYPLSLWPWQEAVKAVWLDRVQIVAEYDDYVHSPSTSIRIPSVVVLRDYVKPQKRV-AFTRFNLFLRDGFSCQYCGAK---GDLTFDHVVPRARGGVTSWENVVAACSRCNLRKGS---KSLRQSGLSLRRAPRQPEAEELRNRGRQFPPNHLHESWVDFLYWDSELEA 198          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353358 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z7X5_9STRA1.860e-146100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FSC9_ECTSI3.800e-945.57Putative transcriptional regulator n=2 Tax=Ectocar... [more]
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BLAST of jgi.p|Trimin1|353358 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CK35_9STRA3.210e-197100.00HNH endonuclease family protein n=1 Tax=Tribonema ... [more]
D8LRG1_ECTSI8.650e-7864.32HNH endonuclease family protein n=1 Tax=Ectocarpus... [more]
A0A7R9UEZ0_9STRA4.940e-7151.65Hypothetical protein n=4 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1XLE6_9STRA6.380e-7157.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2S5X4_9STRA1.410e-7055.15Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A2E4F2L9_9PROT3.130e-6752.15HNH endonuclease n=1 Tax=Rhodospirillaceae bacteri... [more]
A0A316G9X3_9RHOB8.400e-6755.505-methylcytosine-specific restriction endonuclease... [more]
A0A2W5BYX0_9PROT1.790e-6654.26HNH endonuclease n=1 Tax=Micavibrio aeruginosavoru... [more]
A0A1J4RGG8_9PROT2.570e-6653.26HNH endonuclease n=1 Tax=Alphaproteobacteria bacte... [more]
UPI001CD5F9EA5.380e-6650.98HNH endonuclease n=1 Tax=Hasllibacter sp. MH4015 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_159contigContig_159:122720..125974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353358|estExt_Genemark1.C_Ctg_1590020
DescriptionUncharacterized ACR, COG1678
COG categoryK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1678@1|root,2QV60@2759|Eukaryota
Evalue5.43e-16
Seed ortholog2880.D7FSC9
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function UPF0301
Ec32 orthologEc-20_005040.1
TranscriptId353680
TrackFilteredModels1
ProteinId353358
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353358gene_13858Tribonema minus UTEX_B_3156 geneContig_159 122720..125974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353358Trimin1|353358|estExt_Genemark1.C_Ctg_1590020Tribonema minus UTEX_B_3156 polypeptideContig_159 123267..125094 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13858_4exon_13858_4Tribonema minus UTEX_B_3156 exonContig_159 122720..123962 -
exon_13858_3exon_13858_3Tribonema minus UTEX_B_3156 exonContig_159 124333..124432 -
exon_13858_2exon_13858_2Tribonema minus UTEX_B_3156 exonContig_159 125057..125509 -
exon_13858_1exon_13858_1Tribonema minus UTEX_B_3156 exonContig_159 125938..125974 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13858UTR3_13858Tribonema minus UTEX_B_3156 three_prime_UTRContig_159 122720..123266 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13858CDS_13858Tribonema minus UTEX_B_3156 CDSContig_159 125057..125094 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_13858UTR5_13858Tribonema minus UTEX_B_3156 five_prime_UTRContig_159 125938..125974 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13858 ID=mRNA_13858|Name=jgi.p|Trimin1|353358|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1833bp|location=Sequence derived from alignment at Contig_159:122720..125974- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGGAGGTGTGCCTCACCCTGTTTAGAGCCCTGCTCAGATCCGCCAAGAAG
TTCGACAGGTGCCCGGCAGGCAAGGCCCTCATCATCCACGACGACACGCA
GCAGCAGCGGCGCCGCCAGTACGATGAAGACCCGCCGCCGCCCCCGCCGC
CTCACCAACACATCTACGAGCACGAGATCGCGCTGGCGCTCAACACCGCG
CAGGCCACCGCCGCGCGCTTTGCGACCCCGGAGGCGATAACGCGGTCATT
CGCAAAGCACGTCGGAGACGCATTCAGGAGGCCCGTGGGGGAACACGGGG
AGGGGGGCGCTGCGTGGGAGGGGCCGGAGCGGGAGGCGACGGCGCGCCTC
GGCGCGGCGTTCGCCGCGCTGCGGCTGCTGCGCGGCACGTGGGGCTGGGC
GCAACAGCTGGGCGTGCCCAGCAGGCCGCCGCACGTCATCGTCAGCAAGA
ACATGGAGTCTGTGGCGCCGCTTGATGTGCCGGTACCGGGGTCGTACCTG
ATCGCGCATCCGATGGTGGCGGACGAGTGCTTCAAGCGCTCCGTCGTGCT
CGTGGTGGAGGTCGACGACTACGGCACGCGCGGTGTTGTGGTCAACTGCC
CGACGCCCACGCAGCTGCGCGCGCGCGTGCGCGCGGTGCCGCACGCCGCG
GACTGGCAGGACGCGGAGAGCGCGCGCGCGCTGCTCATGCACCACCTCGG
CGACAACCGCGTGTACTTGGGCGGCCCCGTGCGGCAGGTGCTCATGCTAC
ACCGCTACGCCGACGTCGGCGGCCGCCTCATCTGCGGCGAGGGCGGCGGC
GGCGGCGGCGGCGGCAGCGACACGTCGTCATCCGCGCCGGCAGAGCCCGC
TGCTGCCAGTGCGCAGCTGCCGCTGCCGCCGCTGGCTTTCGGCACGCCGC
CGCCGGGCGGCGTTGGCCGGAGGCGGCGCGACCGCGGCAGCGACGGCGGC
GGCGGCGGCGGCGGCGAGCGAGGGGCGCCGGCGGACTGCATCCACGTCGG
CGGCGACCTCATGAAGGCGAACGCGCTGCTCGCGGCGCGCAAGGCGGCGC
CGTCCGACTTTGAGATCGTCGTGGGCGTCGCGGCGTGGGAGCCGGGGATG
CTCGAGGCGGAGCTGGGGCGTGGCGCGTGGGTCGTGGCGCGCGGCGCGCC
GTCGCTCGCCGTGGGCGCGCGCGCGGAGCTCTGGGGCGACATGCTCGCGG
CGCTCGGCGGCGCGCACGCGGAGATGGCGCGCGTGCCGCCGGAGGCGGAC
GAGGCGGCGCGCCGCGACGAGCGGCAGGCGGCGTAGCGGCGGCGTAGCGG
CGGCGGCGGCGGCGGCGGCGCTAGGGGCGCGCACGTACGGTGTGCACGCG
GCGGCAGTGGCCGCGTCGCACAGCTAGCGCGCGGGCCCCGCTGTAGATCT
GCGCTGCGTGGTCGCGGCGCCGCGGCGTCGCGTGCGGTGGGCGCTGGCAC
TCGAGGCGGTGTGCCGCGCGTGGTAGAGGCTGCTCTGTCGGCGCCGCTGT
GCTGCGGGCGCGGCGGCCAGCGTGCCACAGTGCGCGACGCCGCTGCTGAG
GGGCGATGCTGGCACTGCGGCGCCTCGGAAGGCGGGCGATGCTGCGCACT
GCCTGCTCCAGCTGGGTTGAGCATCATCAACAGCAGGCCAGTGCCAGCTG
CTGCCACGTGGCGCGGCGCGAGGGCCTTTGTTGGCATCAGCCTGGACGAC
ATGAGCTGCCAGAATATGGCAAAACGGCTGAGCCATTTGCCAGGAAGTTG
TTGCGGCGAGTGATCCCATGGCGCCTGACGCTCGCAGCTGCTGGTCCGGC
TATTTCGGCAACCCCAAGCGGCGGATTGCCGCG
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protein sequence of jgi.p|Trimin1|353358

>Trimin1|353358|estExt_Genemark1.C_Ctg_1590020 ID=Trimin1|353358|estExt_Genemark1.C_Ctg_1590020|Name=jgi.p|Trimin1|353358|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=278bp
MESVAPLDVPVPGSYLIAHPMVADECFKRSVVLVVEVDDYGTRGVVVNCP
TPTQLRARVRAVPHAADWQDAESARALLMHHLGDNRVYLGGPVRQVLMLH
RYADVGGRLICGEGGGGGGGGSDTSSSAPAEPAAASAQLPLPPLAFGTPP
PGGVGRRRRDRGSDGGGGGGGERGAPADCIHVGGDLMKANALLAARKAAP
SDFEIVVGVAAWEPGMLEAELGRGAWVVARGAPSLAVGARAELWGDMLAA
LGGAHAEMARVPPEADEAARRDERQAA*
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mRNA from alignment at Contig_159:122720..125974-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13858 ID=mRNA_13858|Name=jgi.p|Trimin1|353358|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3255bp|location=Sequence derived from alignment at Contig_159:122720..125974- (Tribonema minus UTEX_B_3156 )
GGGAGGTGTGCCTCACCCTGTTTAGAGCCCTGCTCAGGTTAGCCATAGTG CGTCCCCAGCAAACACACGTCAAATTTGCTCATAGCAACAGCACAGCAAC CTGCACTAATACGCCAACCGTCAACATCAAGCTCATTTTGCTATAAACGC ATGACAGCCTGAGCTTCAGGCATTGCACATAAGACGCGACCACATTTTGG CAGACAACCGAGCAACTGTGCTGCACAGTGCACGAACAAGGCGTTGTGCA TGCTACCAAGTGGCGCCTGCTCAGCAGGCTCACCAAATTCTTCAAACAGG ACGTTGTCATGCTGAGGGCATGACCAACAACATGATCAGATGATCACCCT GCACACTATCACCCTACACACAAGGAACACCTCTGCTGCGCGCTTGGCTC TGCCGCCACATTCGCACTGCACACAAGAGCTCCCGCATGCGCGCTGCTGC CTGGAACCCGTGCAGATCCGCCAAGAAGTTCGACAGGTGCCCGGCAGGCA AGGCCCTCATCATCCACGACGACACGCAGCAGCAGCGGCGCCGCCAGTAC GATGAAGACCCGCCGCCGCCCCCGCCGCCTCACCAACACATCTACGAGCA CGAGATCGCGCTGGCGCTCAACACCGCGCAGGCCACCGCCGCGCGCTTTG CGACCCCGGAGGCGATAACGCGGTCATTCGCAAAGCACGTCGGAGACGCA TTCAGGAGGCCCGTGGGGGAACACGGGGAGGGGGGCGCTGCGTGGGAGGG GCCGGAGCGGGAGGCGACGGCGCGCCTCGGCGCGGCGTTCGCCGCGCTGC GGCTGCTGCGCGGCACGTGGGGCTGGGCGCAACAGCTGGGCGTGCCCAGC AGGCCGCCGCACGTCATCGTCAGCAAGAACATGGAGTCTGTGGCGCCGCT TGATGTGCCGGTACCGGGGTGAGTGCACGCAGGACTGTCGGCTGCGTGTC TTTCACTCGAAAGTAGAGGTACATGCGTACACGCACCGCCCGCCGTCAGC AGCTGTGCGTCTCTCACGCGACAACAAAGGCACATTCTCACGCGACAACA CTGGTACATGCATACATACATGCGCTGCGCGCCATCAGCACAGCAAGAAG GTGCAGTCGGTGGCGCCGTTGGACGCGCTCGTAAGGGGTGAGTGCGCGGC CGGCGGCTGCACGTCCCTCACACAGCAACAGTTACTCTTCGAAGGGAGCA TGTGTGCACTCCGCTGGTGTGCCGAGTTTCGACATGCGGCTCTATTGACG CGGTGATGTTGCCTGCGCAGCATCCTAGCAGCAGGCATGGTCATGGCGTC CAAGAGTAGGATCGTGTGACCGTCCAAGAGTAGGATCGTGTGACAGTATC ATGACACAGCCCGCCCGTATGCAGCATACCGCAGCGCCAGCCTGCCCAGC TCGGCGACATTTCACTTTTAATTGTGCAGGGATTGTGCACCGCCAAGGCG TTGACCCATGGTGAGGGTACAGATGCGCACCGATGAATATTTGGTTGCGT GCCCTGACGCCGCTGCCGCGTATGCTGGCCTCAACGCTGCAGGTCGTACC TGATCGCGCATCCGATGGTGGCGGACGAGTGCTTCAAGCGCTCCGTCGTG CTCGTGGTGGAGGTCGACGACTACGGCACGCGCGGTGTTGTGGTGAGTCA CCTCGCGCATGTGGCGCTTCACACAGTTGTCGCCAACACTGAAACCAAAC GTTTTTTGTGCCTGCGCCAGACGTCACAAAAAGCGCATGTGGCGCTTCGC ACAATGTCAGATATTTCTATCACGGAAGTCGAACATGTCTTCAGAGCGGC GCCGGACGTCATGCGGCCTCTGGGCACAAGAGCACGCTAGCAATTTCCCA TGCCGCGTCCTGCGCGCCGCTGATCGTGCGCTGGCCGCACGCTGCCCCCC CCCCCCCGGGTGCGCTAAACGGACCGCAGCGCTCCTCCCGGCGCGCCGCC GCCATCTGACCTCCCCGTGTCCCTTGCGCCGCGCGCGCCGCCGCCGCCGC CGCGCGCCGCAGGTCAACTGCCCGACGCCCACGCAGCTGCGCGCGCGCGT GCGCGCGGTGCCGCACGCCGCGGACTGGCAGGACGCGGAGAGCGCGCGCG CGCTGCTCATGCACCACCTCGGCGACAACCGCGTGTACTTGGGCGGCCCC GTGCGGCAGGTGCTCATGCTACACCGCTACGCCGACGTCGGCGGCCGCCT CATCTGCGGCGAGGGCGGCGGCGGCGGCGGCGGCGGCAGCGACACGTCGT CATCCGCGCCGGCAGAGCCCGCTGCTGCCAGTGCGCAGCTGCCGCTGCCG CCGCTGGCTTTCGGCACGCCGCCGCCGGGCGGCGTTGGCCGGAGGCGGCG CGACCGCGGCAGCGACGGCGGCGGCGGCGGCGGCGGCGAGCGAGGGGCGC CGGCGGACTGCATCCACGTCGGCGGCGACCTCATGAAGGCGAACGCGCTG CTCGCGGCGCGCAAGGCGGCGCCGTCCGACTTTGAGATCGTCGTGGGCGT CGCGGCGTGGGAGCCGGGGATGCTCGAGGCGGAGCTGGGGCGTGGCGCGT GGGTCGTGGCGCGCGGCGCGCCGTCGCTCGCCGTGGGCGCGCGCGCGGAG CTCTGGGGCGACATGCTCGCGGCGCTCGGCGGCGCGCACGCGGAGATGGC GCGCGTGCCGCCGGAGGCGGACGAGGCGGCGCGCCGCGACGAGCGGCAGG CGGCGTAGCGGCGGCGTAGCGGCGGCGGCGGCGGCGGCGGCGCTAGGGGC GCGCACGTACGGTGTGCACGCGGCGGCAGTGGCCGCGTCGCACAGCTAGC GCGCGGGCCCCGCTGTAGATCTGCGCTGCGTGGTCGCGGCGCCGCGGCGT CGCGTGCGGTGGGCGCTGGCACTCGAGGCGGTGTGCCGCGCGTGGTAGAG GCTGCTCTGTCGGCGCCGCTGTGCTGCGGGCGCGGCGGCCAGCGTGCCAC AGTGCGCGACGCCGCTGCTGAGGGGCGATGCTGGCACTGCGGCGCCTCGG AAGGCGGGCGATGCTGCGCACTGCCTGCTCCAGCTGGGTTGAGCATCATC AACAGCAGGCCAGTGCCAGCTGCTGCCACGTGGCGCGGCGCGAGGGCCTT TGTTGGCATCAGCCTGGACGACATGAGCTGCCAGAATATGGCAAAACGGC TGAGCCATTTGCCAGGAAGTTGTTGCGGCGAGTGATCCCATGGCGCCTGA CGCTCGCAGCTGCTGGTCCGGCTATTTCGGCAACCCCAAGCGGCGGATTG CCGCG
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Coding sequence (CDS) from alignment at Contig_159:122720..125974-

>mRNA_13858 ID=mRNA_13858|Name=jgi.p|Trimin1|353358|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=834bp|location=Sequence derived from alignment at Contig_159:122720..125974- (Tribonema minus UTEX_B_3156 )
ATGGAGTCTGTGGCGCCGCTTGATGTGCCGGTACCGGGGTCGTACCTGAT
CGCGCATCCGATGGTGGCGGACGAGTGCTTCAAGCGCTCCGTCGTGCTCG
TGGTGGAGGTCGACGACTACGGCACGCGCGGTGTTGTGGTCAACTGCCCG
ACGCCCACGCAGCTGCGCGCGCGCGTGCGCGCGGTGCCGCACGCCGCGGA
CTGGCAGGACGCGGAGAGCGCGCGCGCGCTGCTCATGCACCACCTCGGCG
ACAACCGCGTGTACTTGGGCGGCCCCGTGCGGCAGGTGCTCATGCTACAC
CGCTACGCCGACGTCGGCGGCCGCCTCATCTGCGGCGAGGGCGGCGGCGG
CGGCGGCGGCGGCAGCGACACGTCGTCATCCGCGCCGGCAGAGCCCGCTG
CTGCCAGTGCGCAGCTGCCGCTGCCGCCGCTGGCTTTCGGCACGCCGCCG
CCGGGCGGCGTTGGCCGGAGGCGGCGCGACCGCGGCAGCGACGGCGGCGG
CGGCGGCGGCGGCGAGCGAGGGGCGCCGGCGGACTGCATCCACGTCGGCG
GCGACCTCATGAAGGCGAACGCGCTGCTCGCGGCGCGCAAGGCGGCGCCG
TCCGACTTTGAGATCGTCGTGGGCGTCGCGGCGTGGGAGCCGGGGATGCT
CGAGGCGGAGCTGGGGCGTGGCGCGTGGGTCGTGGCGCGCGGCGCGCCGT
CGCTCGCCGTGGGCGCGCGCGCGGAGCTCTGGGGCGACATGCTCGCGGCG
CTCGGCGGCGCGCACGCGGAGATGGCGCGCGTGCCGCCGGAGGCGGACGA
GGCGGCGCGCCGCGACGAGCGGCAGGCGGCGTAG
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