Trimin1|155432|gw1.159.83.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|155432
Unique NameTrimin1|155432|gw1.159.83.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length334
Homology
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: A0A835ZAL5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL5_9STRA)

HSP 1 Score: 489 bits (1259), Expect = 7.190e-172
Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 0
Query:    1 VPGSDEIDKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPARATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGGGRGLPYGMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPYGXXXXXXXXASAXXXXXXYGXXXXXXXXXXXXXXXXXXXXXXGGYGAGAPGYSAPQAAGYAXXRAGAGGYDAAAAGAAQAGAPPPGQQPQYA 334
            VPGSDEIDKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPARATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGGGRGLPYGMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPYGXXXXXXXXASAXXXXXXYGXXXXXXXXXXXXXXXXXXXXXXGGYGAGAPGYSAPQAAGYAXXRAGAGGYDAAAAGAAQAGAPPPGQQPQYA
Sbjct:    1 VPGSDEIDKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPARATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGGGRGLPYGMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPYGXXXXXXXXASAXXXXXXYGXXXXXXXXXXXXXXXXXXXXXXGGYGAGAPGYSAPQAAGYAXXRAGAGGYDAAAAGAAQAGAPPPGQQPQYA 334          
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: A0A836CMD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD2_9STRA)

HSP 1 Score: 291 bits (745), Expect = 5.970e-96
Identity = 144/174 (82.76%), Postives = 158/174 (90.80%), Query Frame = 0
Query:    6 EIDKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPARATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGK 179
            E+DKD+D+ GK+FVG   GISWQTS+ESLS +FSKFGALADVALMKDKYTGQPRGFGFIKFEDP+V+D VL Q EH+IDGR VDVKRAVPKSEAPGP+R  R AD NKVFVGGLAPSVT AEFR YFEGFGAVSDAVVMFDRQT RSRGFGFVTFQ++SVVQNVLMGTHE+NG+
Sbjct:   14 ELDKDNDILGKIFVG---GISWQTSDESLSKYFSKFGALADVALMKDKYTGQPRGFGFIKFEDPAVVDVVLTQAEHSIDGRTVDVKRAVPKSEAPGPSRTARPADTNKVFVGGLAPSVTVAEFRTYFEGFGAVSDAVVMFDRQTLRSRGFGFVTFQEDSVVQNVLMGTHEINGE 184          
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: D7FW71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW71_ECTSI)

HSP 1 Score: 283 bits (723), Expect = 2.290e-88
Identity = 142/200 (71.00%), Postives = 169/200 (84.50%), Query Frame = 0
Query:    1 VPGSDEIDKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPA-RATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGG 199
            + GS   DKD+DV GKLF+G   GISWQT+EE L +HF K+G LAD+ALMKDKYTG PRGFGFIKFED +VLD +L+Q EH IDG+VVDVKRAVPKSEAPGP+ R++R A+ NK+FVGGLAP+V  AEFR+YFE FG V DAVVMFDRQTQRSRGFGFVTFQ+++VV +++MGTHE+NGKMVEVK AEPKE+R   +P G
Sbjct:  134 IAGSVAHDKDNDVEGKLFIG---GISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFEDITVLDEILSQ-EHKIDGKVVDVKRAVPKSEAPGPSSRSSRPAETNKIFVGGLAPTVMMAEFRKYFETFGGVVDAVVMFDRQTQRSRGFGFVTFQEDAVVHDIMMGTHEINGKMVEVKRAEPKENRSGRAPRG 329          
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: A0A6H5JV91_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV91_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 6.060e-68
Identity = 112/151 (74.17%), Postives = 131/151 (86.75%), Query Frame = 0
Query:   50 MKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPA-RATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGG 199
            MKDKYTG PRGFGFIKFED +VLD +L+Q EH IDG+VVDVKRAVPKSEAPGP+ R++R A+ NK+FVGGLAP+V  AEFR+YFE FG V DAVVMFDRQTQRSRGFGFVTFQ+++VV  ++MGTHE+NGKMVEVK AEPKE+R   +P G
Sbjct:    1 MKDKYTGHPRGFGFIKFEDVTVLDEILSQ-EHKIDGKVVDVKRAVPKSEAPGPSSRSSRPAETNKIFVGGLAPTVMMAEFRKYFETFGGVVDAVVMFDRQTQRSRGFGFVTFQEDAVVHEIMMGTHEINGKMVEVKRAEPKENRSGRAPRG 150          
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: A0A7S2XZ50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ50_9STRA)

HSP 1 Score: 214 bits (545), Expect = 8.050e-64
Identity = 108/187 (57.75%), Postives = 136/187 (72.73%), Query Frame = 0
Query:   15 GKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPARATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGGGR 201
            GK+F+G   G+SWQT+E+ L Y+F KFG L DVA+MKDK+TGQPRGFGF+ F+D SV++ VL Q  H +DGR VD KRAV + E+  P       +  K+FVGGLAPSV   +FR YF+ FG ++DAVVM DR T RSRGFGFVT+ DES V++VL G+HE+ GK VEVK AEP++ R    P GGR
Sbjct:    5 GKVFIG---GVSWQTTEDGLRYYFEKFGELTDVAVMKDKFTGQPRGFGFVTFKDTSVVEKVLGQT-HTLDGRQVDCKRAVRREESSAPRGGGYGGESKKIFVGGLAPSVEEDDFRGYFDKFGTITDAVVMMDRNTGRSRGFGFVTYDDESSVRDVLAGSHEIKGKFVEVKRAEPRQDR---GPAGGR 184          
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: F0WG76_9STRA (Uncharacterized protein AlNc14C88G5606 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WG76_9STRA)

HSP 1 Score: 215 bits (548), Expect = 1.050e-62
Identity = 112/201 (55.72%), Postives = 141/201 (70.15%), Query Frame = 0
Query:   15 GKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSE-APGPARATRQA------------DFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGGGRG 202
            GKLF+G   G+SW+T+EE+L  HF K+G L D ALMKDK++GQPRGFGF+ F D +VLD VL +  H IDGR V+VKRA+P+ + A GP+                  +  KVFVGGL PSVT  +FR+YFE FG ++DAVVMFDR+TQRSRGFGFVTF++E  V  V+  THEL+GK+VE+K AEPKE+R      GG G
Sbjct:  102 GKLFIG---GVSWETTEETLRDHFGKYGPLTDAALMKDKFSGQPRGFGFVTFADVAVLDRVLEE-SHTIDGRTVEVKRAIPRDKTASGPSDVRSSGAHGRGNSGGVITESKKVFVGGLPPSVTEQDFRRYFEEFGRITDAVVMFDRETQRSRGFGFVTFEEEGAVAEVISKTHELHGKVVEIKRAEPKEARSGGGYSGGYG 298          
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: A0A7S3UWI8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWI8_HETAK)

HSP 1 Score: 205 bits (521), Expect = 1.010e-61
Identity = 100/184 (54.35%), Postives = 134/184 (72.83%), Query Frame = 0
Query:    8 DKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPARATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKES 191
            ++ +DVTGKLF+G   G+SWQT+E+ L ++F KFG L D A+MKDK+TGQPRGFGF++FED S +D VLA+ EH IDGRV+D+K+A+ +  AP     + + D  K+FVGGL  +VT  +F+ YF  FG ++DAVVM DR T RSRGFGFVT+ D   V  V+  TH L  K+VE+K AEP++S
Sbjct:    7 ERSNDVTGKLFLG---GVSWQTTEDGLKFYFEKFGKLKDCAVMKDKFTGQPRGFGFVQFEDASAVDKVLAE-EHTIDGRVLDIKKAISREHAP--RAISEKIDVKKIFVGGLEQAVTEGDFKDYFGKFGDITDAVVMMDRNTNRSRGFGFVTYADAESVNRVMNETHTLRDKVVEIKRAEPRDS 184          
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: A0A0P1AWA8_PLAHL (Heterogeneous nuclear ribonucleoprotein 1-like isoform x1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWA8_PLAHL)

HSP 1 Score: 207 bits (527), Expect = 6.950e-61
Identity = 106/194 (54.64%), Postives = 135/194 (69.59%), Query Frame = 0
Query:   15 GKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSE-APGPA--RATRQA-------------DFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESR 192
            GKLF+G   G+SW+T+E++L  HF K+GAL D ALMKDKYTGQPRGFGF+ F D S +D VL +  H +DGR V+VKRA+P+   APG +  R  R               +  K+FVGGLAP++   +FR YFE FG ++DAVVM DR TQRSRGFGF+TF+DES V  V+   HE++GK VE+K AEPKE+R
Sbjct:  127 GKLFIG---GVSWETTEDTLRQHFGKYGALTDAALMKDKYTGQPRGFGFVTFADASAIDRVLEET-HTLDGRSVEVKRAIPRERTAPGSSEFRGARSGYSSNGXXXXGIFTESKKIFVGGLAPTIAEQDFRHYFEEFGRITDAVVMIDRDTQRSRGFGFITFEDESSVAEVISKNHEIHGKSVEIKRAEPKEAR 316          
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: A0A484E761_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E761_BRELC)

HSP 1 Score: 210 bits (535), Expect = 1.440e-60
Identity = 108/194 (55.67%), Postives = 138/194 (71.13%), Query Frame = 0
Query:   15 GKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSE-APGPA--RATR-------QADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPG 198
            GKLF+G   G+SW+T+E++L  HF K+G L D ALMKDKYTGQPRGFGF+ F D   +D VL +  H +DGR V+VKRA+P+   APGP+  R  R         +  K+FVGGLAP+V   +FR YFE FG ++DAVVM DR TQRSRGFGF+TF+DES V  V+  +HE++GK VE+K AEPKE+R  +S G
Sbjct:  119 GKLFIG---GVSWETTEDTLRQHFGKYGVLTDAALMKDKYTGQPRGFGFVTFADALAIDRVLEET-HTLDGRSVEVKRAIPRERTAPGPSDFRGGRGNNSSGGYTEQKKIFVGGLAPTVAEEDFRHYFEEFGKITDAVVMIDRDTQRSRGFGFITFEDESSVVEVISKSHEIHGKTVEIKRAEPKEARAGSSTG 308          
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: A0A6G0XAN2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XAN2_9STRA)

HSP 1 Score: 208 bits (529), Expect = 3.080e-60
Identity = 110/208 (52.88%), Postives = 141/208 (67.79%), Query Frame = 0
Query:   15 GKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSE----------------APGPARATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGGGRGLPYG 206
            GK+FVG   G+SW+T+E++L  HFS++G L D ALMKDKY+GQPRGFGF+ FEDPSV+D VL +  HN+DGR V+VKRAVP+                  + G +   R  +  K+FVGGL P+VT  +FR YFE FG ++DAVVM DR TQRSRGFGFV+F++E  V  V+  +HEL+GK+VE+K AEPK   R     GGRG   G
Sbjct:   76 GKIFVG---GVSWETTEDNLRAHFSQYGNLTDAALMKDKYSGQPRGFGFVTFEDPSVVDRVLNET-HNLDGRNVEVKRAVPRDSMVGGRSGGPSTSGSGYSDGRSGGGRTIESKKIFVGGLPPTVTNEDFRSYFEDFGKITDAVVMMDRDTQRSRGFGFVSFEEEGAVAEVISKSHELHGKVVEIKRAEPKGEIR-----GGRGYDMG 274          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAL5_9STRA7.190e-172100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CMD2_9STRA5.970e-9682.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FW71_ECTSI2.290e-8871.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JV91_9PHAE6.060e-6874.17RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2XZ50_9STRA8.050e-6457.75Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
F0WG76_9STRA1.050e-6255.72Uncharacterized protein AlNc14C88G5606 n=1 Tax=Alb... [more]
A0A7S3UWI8_HETAK1.010e-6154.35Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0P1AWA8_PLAHL6.950e-6154.64Heterogeneous nuclear ribonucleoprotein 1-like iso... [more]
A0A484E761_BRELC1.440e-6055.67Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A6G0XAN2_9STRA3.080e-6052.88Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 113..184
e-value: 1.8E-22
score: 90.6
coord: 16..91
e-value: 5.1E-17
score: 72.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 24..87
e-value: 2.8E-10
score: 39.9
coord: 114..171
e-value: 1.6E-14
score: 53.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 15..95
score: 14.317041
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 112..188
score: 17.233515
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 98..205
e-value: 9.4E-26
score: 92.4
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 14..97
e-value: 1.5E-21
score: 78.4
NoneNo IPR availablePANTHERPTHR48032RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6coord: 11..308
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 23..102
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 107..215

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_159contigContig_159:267329..269075 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155432mRNA_13883Tribonema minus UTEX_B_3156 mRNAContig_159 267329..269075 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|155432|gw1.159.83.1 ID=Trimin1|155432|gw1.159.83.1|Name=jgi.p|Trimin1|155432|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=334bp
VPGSDEIDKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALM
KDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAP
GPARATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQ
RSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGGG
RGLPYGMQPYGMPMAGRGMGGRHVYGRNGGGGAAGAGATSPYGAAGYGVY
GASAAAAAAAYGSAYGAAAAAAYGSYPAYAAYTTGGYGAGAPGYSAPQAA
GYAAYRAGAGGYDAAAAGAAQAGAPPPGQQPQYA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf