Trimin1|353343|estExt_Genemark1.C_Ctg_1580002 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353343
Unique NameTrimin1|353343|estExt_Genemark1.C_Ctg_1580002
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length336
Homology
[Close]
BLAST of jgi.p|Trimin1|353343 vs. uniprot
Match: A0A835ZAM7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAM7_9STRA)

HSP 1 Score: 399 bits (1025), Expect = 3.040e-136
Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 0 
Query:    1 MAPRCLCVLAAALCSLAGASDTDYFGGASSAHGLALHRLAESLRDLATTEAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXAERRLDVNDTYFGGRDAAEQRDLWDDEHPEDSGDCAPTPEPSXXXXXXXXXXXXXXXXXASAPDVTTAPTSXXXXXXXXXXXXXXXXXXXXXXXARRLDDDDGETYFKTYFAEAALALGLGEHRDLTDDGSGDCTPTPEPAPSXXXXXXXXXXXXXAPFARRAEEESQDYFKEVAGSERRRATDSDSHSDSXXXXXXXXPSCADPIPIGADATGSPTXXXXXXXXXXXXXXXXXXXXXXXVLRRVLTGDEPYFND 335
            MAPRCLCVLAAALCSLAGASDTDYFGGASSAHGLALHRLAESLRDLATTEAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXAERRLDVNDTYFGGRDAAEQRDLWDDEHPEDSGDCAPTPEPSXXXXXXXXXXXXXXXXXASAPDVTTAPTSXXXXXXXXXXXXXXXXXXXXXXXARRLDDDDGETYFKTYFAEAALALGLGEHRDLTDDGSGDCTPTPEPAPSXXXXXXXXXXXXXAPFARRAEEESQDYFKEVAGSERRRATDSDSHSDSXXXXXXXXPSCADPIPIGADATGSPTXXXXXXXXXXXXXXXXXXXXXXXVLRRVLTGDEPYFND
Sbjct:    1 MAPRCLCVLAAALCSLAGASDTDYFGGASSAHGLALHRLAESLRDLATTEAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXAERRLDVNDTYFGGRDAAEQRDLWDDEHPEDSGDCAPTPEPSXXXXXXXXXXXXXXXXXASAPDVTTAPTSXXXXXXXXXXXXXXXXXXXXXXXARRLDDDDGETYFKTYFAEAALALGLGEHRDLTDDGSGDCTPTPEPAPSXXXXXXXXXXXXXAPFARRAEEESQDYFKEVAGSERRRATDSDSHSDSXXXXXXXXPSCADPIPIGADATGSPTXXXXXXXXXXXXXXXXXXXXXXXVLRRVLTGDEPYFND 335
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353343 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZAM7_9STRA3.040e-136100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 240..260
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..335
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 239..268
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 294..314
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 219..235
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..169

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_158contigContig_158:21867..31416 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353343mRNA_17385Tribonema minus UTEX_B_3156 mRNAContig_158 21725..32047 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353343|estExt_Genemark1.C_Ctg_1580002 ID=Trimin1|353343|estExt_Genemark1.C_Ctg_1580002|Name=jgi.p|Trimin1|353343|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=336bp
MAPRCLCVLAAALCSLAGASDTDYFGGASSAHGLALHRLAESLRDLATTE
APTAAPTAAPTSAPTNAPTSVPTSAPSAAPAERRLDVNDTYFGGRDAAEQ
RDLWDDEHPEDSGDCAPTPEPSCTPEPVPSCEPTPPPETASAPDVTTAPT
SSPTSSPTVAPTSAPSSAPSAAPAARRLDDDDGETYFKTYFAEAALALGL
GEHRDLTDDGSGDCTPTPEPAPSCEPTPTPGPEYSPAPFARRAEEESQDY
FKEVAGSERRRATDSDSHSDSPSCEPTPQPSCADPIPIGADATGSPTASP
TSAPTTSPTSAPSVAPTAMPVLRRVLTGDEPYFND*
back to top