mRNA_16374 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353341
Unique NamemRNA_16374
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|353341 vs. uniprot
Match: A0A835Z950_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z950_9STRA)

HSP 1 Score: 561 bits (1446), Expect = 5.350e-193
Identity = 519/519 (100.00%), Postives = 519/519 (100.00%), Query Frame = 1
Query:    1 MKGGAAVDATAFGAGATSSAAXXXXXXXXXXXXXXXXXXXXXXXXXXQQLQPHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQQHRQPQXXXXXXXXXXXXXXVHASWQELRPDPRVLDLYYSMDDHVQSLLGRIAAARARLLNTADRSQWSQQQRQQQLDAFNKRAAALIAEEQRLQQDFRGVTVHQMWQAEADRRADFLRYANKTAFVVHESWMQFERWRQISNLKVDCTFATPEQRAELAEWSRRQEHKWRAKVDTWLQDEVAELEGDWRQLEAWAARRGVCVTRAPYNVAGAPHASQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPPHLSETEPGQQVLQELAGGPQAESAAEADGTPAAVHNDAPTAAXXXXXXXXXXXXXXXXYVSDASAEYERANKSSTAAVAGTDADTPAVTATAAPSAPASDTDSIISSSAGD 1557
            MKGGAAVDATAFGAGATSSAAXXXXXXXXXXXXXXXXXXXXXXXXXXQQLQPHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQQHRQPQXXXXXXXXXXXXXXVHASWQELRPDPRVLDLYYSMDDHVQSLLGRIAAARARLLNTADRSQWSQQQRQQQLDAFNKRAAALIAEEQRLQQDFRGVTVHQMWQAEADRRADFLRYANKTAFVVHESWMQFERWRQISNLKVDCTFATPEQRAELAEWSRRQEHKWRAKVDTWLQDEVAELEGDWRQLEAWAARRGVCVTRAPYNVAGAPHASQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPPHLSETEPGQQVLQELAGGPQAESAAEADGTPAAVHNDAPTAAXXXXXXXXXXXXXXXXYVSDASAEYERANKSSTAAVAGTDADTPAVTATAAPSAPASDTDSIISSSAGD
Sbjct:    1 MKGGAAVDATAFGAGATSSAAXXXXXXXXXXXXXXXXXXXXXXXXXXQQLQPHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQQHRQPQXXXXXXXXXXXXXXVHASWQELRPDPRVLDLYYSMDDHVQSLLGRIAAARARLLNTADRSQWSQQQRQQQLDAFNKRAAALIAEEQRLQQDFRGVTVHQMWQAEADRRADFLRYANKTAFVVHESWMQFERWRQISNLKVDCTFATPEQRAELAEWSRRQEHKWRAKVDTWLQDEVAELEGDWRQLEAWAARRGVCVTRAPYNVAGAPHASQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPPHLSETEPGQQVLQELAGGPQAESAAEADGTPAAVHNDAPTAAXXXXXXXXXXXXXXXXYVSDASAEYERANKSSTAAVAGTDADTPAVTATAAPSAPASDTDSIISSSAGD 519          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353341 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z950_9STRA5.350e-193100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_157contigContig_157:312068..315394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353341|estExt_Genemark1.C_Ctg_1570033
Hectar predicted targeting categoryother localisation
TranscriptId353663
TrackFilteredModels1
ProteinId353341
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353341gene_16374Tribonema minus UTEX_B_3156 geneContig_157 312068..315394 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16374_3exon_16374_3Tribonema minus UTEX_B_3156 exonContig_157 312068..312464 -
exon_16374_2exon_16374_2Tribonema minus UTEX_B_3156 exonContig_157 313214..313285 -
exon_16374_1exon_16374_1Tribonema minus UTEX_B_3156 exonContig_157 314039..315394 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_16374UTR3_16374Tribonema minus UTEX_B_3156 three_prime_UTRContig_157 312068..312332 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16374CDS_16374Tribonema minus UTEX_B_3156 CDSContig_157 314039..315394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353341Trimin1|353341|estExt_Genemark1.C_Ctg_1570033Tribonema minus UTEX_B_3156 polypeptideContig_157 312333..315394 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16374 ID=mRNA_16374|Name=jgi.p|Trimin1|353341|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1825bp|location=Sequence derived from alignment at Contig_157:312068..315394- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGGGGGTGCTGCTGTCGACGCCACCGCATTTGGAGCTGGCGCCAC
TTCTTCTGCCGCTGCCGCCGTCGCCGCCGCCCCCCAGCAGTACCACCAGC
AGCACCACCAGCAGTACCACCAACAGCACCACCAGCAGCACCAACAGCTG
CAGCCGCACCACCACCACCACCACCAGCAGCAGCAGCCGCAACAGCAGCA
GCCGCAGTACCCCCAGCCGCAGCCGCAGCACCACCAGCACCAGCACCAGC
AGCAGCAGCAGCAGGCGCAGCAGCACCGGCAGCCGCAGCAGCACGGACAG
CAGCAGCAGCAGCAGCCGCAGCAGCCACCGGTGCACGCAAGCTGGCAGGA
GTTACGCCCAGATCCGCGTGTGCTGGACCTTTACTATTCCATGGACGACC
ATGTGCAGAGCCTGCTGGGCAGGATCGCGGCTGCCAGGGCTCGGCTCCTG
AACACTGCTGACCGGTCGCAATGGTCGCAGCAGCAGCGGCAACAGCAGCT
CGATGCCTTCAATAAACGTGCGGCAGCGCTCATCGCCGAGGAGCAGCGCT
TGCAGCAGGACTTCAGAGGCGTCACCGTCCACCAGATGTGGCAGGCGGAG
GCAGACAGGCGCGCCGACTTTCTGCGCTACGCCAACAAAACCGCTTTCGT
GGTGCACGAGAGCTGGATGCAGTTCGAGCGCTGGAGGCAGATCTCGAATC
TGAAGGTTGACTGCACCTTTGCCACGCCGGAGCAGCGGGCGGAGCTGGCG
GAGTGGTCACGCAGGCAGGAGCACAAGTGGCGCGCCAAGGTGGACACCTG
GCTGCAAGATGAGGTGGCAGAGCTGGAGGGCGACTGGCGCCAGCTGGAGG
CCTGGGCTGCACGCAGGGGGGTATGTGTGACGCGTGCCCCCTACAATGTG
GCCGGCGCACCCCATGCGTCGCAGCAGCAGCAGCAGCAGCAGGACCAGCA
GGTGCGGCAGCAGCAGCCACGGCAGCAGCAGCCACAGCAGCAGCAGCAGC
AGCGGGTTCCGCAGCAGCAGCAGGAGGGCCGGCAGGTGCAGCAGCAGCAG
CAGCAGCAGCCACAGCAGCAGCGGCAGCAGCGGGTGCTGCAGCAGCAGGA
ACATGAGCAGCGCCAGCCACAGCAGCGCCCGCCGCCGCAGCAGCAGCAGC
GGGCACAGCAGCAGCAGCAGCGGCGCGCGCAGCAGCAAGAGCAGCAGCAG
CAGCAGCAGCAGCACGAGCCCCCTCACCTGAGCGAGACTGAGCCTGGGCA
GCAGGTCCTGCAAGAGCTTGCAGGCGGGCCTCAGGCTGAGTCGGCGGCAG
AGGCGGATGGTACCCCTGCAGCTGTGCACAATGATGCGCCCACTGCAGCC
GAAGAGTCAGAGGCGGAGGCGACTCGTGCAGCTGTGCAAGCAGACGGCTA
TGTGTCCGACGCCTCTGCAGAATATGAGCGCGCCAATAAATCGAGCACTG
CTGCGGTGGCCGGCACGGACGCAGACACACCTGCCGTAACCGCAACTGCT
GCGCCGTCCGCACCTGCGAGTGACACTGACTCTATCATCAGCAGCAGTGC
TGGCGACTAGAGAGGAGCACCGCAGCAAAATATGACCAGTAAAGACAACG
GCACCACCAGCAGCGCAACTCACCGCTGCACGGTACGTTGCTCAACAGCG
GAGGTATTGTCCCCGCTGTGCCGTCGCAAGCGTTGAGTGTGGGAGCTGGG
CGCAATTAGAGTGAAGCCCGCAGTACGCTGTTGTGAGGCAGGCCCTGTGC
CAAGTAGTAAATGGTGAGGGGAGGTGTGTGTGTGTGTGGGGGGGGGGGGG
GGGGGTCAAGTCTGTGTGCAAGCGC
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protein sequence of jgi.p|Trimin1|353341

>Trimin1|353341|estExt_Genemark1.C_Ctg_1570033 ID=Trimin1|353341|estExt_Genemark1.C_Ctg_1570033|Name=jgi.p|Trimin1|353341|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=520bp
MKGGAAVDATAFGAGATSSAAAAVAAAPQQYHQQHHQQYHQQHHQQHQQL
QPHHHHHHQQQQPQQQQPQYPQPQPQHHQHQHQQQQQQAQQHRQPQQHGQ
QQQQQPQQPPVHASWQELRPDPRVLDLYYSMDDHVQSLLGRIAAARARLL
NTADRSQWSQQQRQQQLDAFNKRAAALIAEEQRLQQDFRGVTVHQMWQAE
ADRRADFLRYANKTAFVVHESWMQFERWRQISNLKVDCTFATPEQRAELA
EWSRRQEHKWRAKVDTWLQDEVAELEGDWRQLEAWAARRGVCVTRAPYNV
AGAPHASQQQQQQQDQQVRQQQPRQQQPQQQQQQRVPQQQQEGRQVQQQQ
QQQPQQQRQQRVLQQQEHEQRQPQQRPPPQQQQRAQQQQQRRAQQQEQQQ
QQQQHEPPHLSETEPGQQVLQELAGGPQAESAAEADGTPAAVHNDAPTAA
EESEAEATRAAVQADGYVSDASAEYERANKSSTAAVAGTDADTPAVTATA
APSAPASDTDSIISSSAGD*
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mRNA from alignment at Contig_157:312068..315394-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16374 ID=mRNA_16374|Name=jgi.p|Trimin1|353341|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3327bp|location=Sequence derived from alignment at Contig_157:312068..315394- (Tribonema minus UTEX_B_3156 )
ATGAAGGGGGGTGCTGCTGTCGACGCCACCGCATTTGGAGCTGGCGCCAC TTCTTCTGCCGCTGCCGCCGTCGCCGCCGCCCCCCAGCAGTACCACCAGC AGCACCACCAGCAGTACCACCAACAGCACCACCAGCAGCACCAACAGCTG CAGCCGCACCACCACCACCACCACCAGCAGCAGCAGCCGCAACAGCAGCA GCCGCAGTACCCCCAGCCGCAGCCGCAGCACCACCAGCACCAGCACCAGC AGCAGCAGCAGCAGGCGCAGCAGCACCGGCAGCCGCAGCAGCACGGACAG CAGCAGCAGCAGCAGCCGCAGCAGCCACCGGTGCACGCAAGCTGGCAGGA GTTACGCCCAGATCCGCGTGTGCTGGACCTTTACTATTCCATGGACGACC ATGTGCAGAGCCTGCTGGGCAGGATCGCGGCTGCCAGGGCTCGGCTCCTG AACACTGCTGACCGGTCGCAATGGTCGCAGCAGCAGCGGCAACAGCAGCT CGATGCCTTCAATAAACGTGCGGCAGCGCTCATCGCCGAGGAGCAGCGCT TGCAGCAGGACTTCAGAGGCGTCACCGTCCACCAGATGTGGCAGGCGGAG GCAGACAGGCGCGCCGACTTTCTGCGCTACGCCAACAAAACCGCTTTCGT GGTGCACGAGAGCTGGATGCAGTTCGAGCGCTGGAGGCAGATCTCGAATC TGAAGGTTGACTGCACCTTTGCCACGCCGGAGCAGCGGGCGGAGCTGGCG GAGTGGTCACGCAGGCAGGAGCACAAGTGGCGCGCCAAGGTGGACACCTG GCTGCAAGATGAGGTGGCAGAGCTGGAGGGCGACTGGCGCCAGCTGGAGG CCTGGGCTGCACGCAGGGGGGTATGTGTGACGCGTGCCCCCTACAATGTG GCCGGCGCACCCCATGCGTCGCAGCAGCAGCAGCAGCAGCAGGACCAGCA GGTGCGGCAGCAGCAGCCACGGCAGCAGCAGCCACAGCAGCAGCAGCAGC AGCGGGTTCCGCAGCAGCAGCAGGAGGGCCGGCAGGTGCAGCAGCAGCAG CAGCAGCAGCCACAGCAGCAGCGGCAGCAGCGGGTGCTGCAGCAGCAGGA ACATGAGCAGCGCCAGCCACAGCAGCGCCCGCCGCCGCAGCAGCAGCAGC GGGCACAGCAGCAGCAGCAGCGGCGCGCGCAGCAGCAAGAGCAGCAGCAG CAGCAGCAGCAGCACGAGCCCCCTCACCTGAGCGAGACTGAGCCTGGGCA GCAGGTCCTGCAAGAGCTTGCAGGCGGGCCTCAGGCTGAGTCGGCGGCAG AGGCGGATGGTACCCCTGCAGCTGTGCACAATGATGCGCCCACTGCAGCC GAAGAGGTGAGCATTTTTGACACACTTCAACCATACTCTAGTTGGCTGCT GACGAGCAAGCACGTGTTGGCGCTCATGTGTGTGAGAGAAAGAGAGAGAG AGACAGAGGATGAGCAGTGATGGGCTGTCAGAAAGCAGGCAGGCTGAGCC CTGCTGACGATGACAGCCGACCCGCTTTGGCTGTAGGCGTTGCCCATTTT GTCAAAATTGGAGATTGTTGTCAAGATCAAGCCGCAGTGATCTCATTTCA TCAGGTGAAGTGTGCATTCACATTCATTAAACCTCGGTGTATGCTCTGTG TCGCACTGCCGTTGCGCATCATGAAAAACGCAACCATCTGTGGTTCCTCA TGCCCCTCTACGATGGTATGCTGCATGTTGAGATGACCACGCGCGCAGCA TTTCTGATTTATGTACGTCATCATCACGAACATGACAATGTGCTACTTGC AAAGTGTTGTCCATGTACCAAGCGAACAATAGAGTATCACTGACAGCAAG TGCGCTGTGCCGACATCATTGCAGGCCTACTTTTGGCTCACCTACATGAC TTGTAGATAATGACTACAGCTGGTGGTGTAGCGCTGCCCAATCACACGAG AGGCAGAGCCTAGGCCTCATTGCGCTCTCCTGATATCGGTGATGTTTTTC CCCACAGGACCAAGGGGATGAAGCAATTTGGCTGCTGTCTGACCAAGACT CTCAGTCTGACTCAGGGTCTCCGCGGGCTGAGGCAGAGTCTGACTTGGCG GTGTCTGAGTCAGAGGCGGAGGCGACTCGTGCAGCTGTGCAAGCAGACGG CTATGTGTCCGACGCCTCTGCAGAATATGAGGTGAGCATTTGACACGCCC GAACATATCTTCAACCGTCACTCTTCAACTCTGGTTGTTCGCTGGTGAAC GTATGCACGTTGGCGTAGCAGATGTACCACACAGTCAGAGAGGGTGCCTG CTGTAGAGAGTATACATGACCTGCAAAGGAATACTTCAAAGTATGCAGCG CTGCTGACAATGACTGTAAACTCTCATTTGCCAGTAGGTCGCTGATATCA TGGTCAACATCTCTCGACAGACACGCCGCACTCTCTTGCCACTTCATTGT CACAAAGAGTCTGTGTATTTACATTTGTGAACCTTTACTGTTTGGAACTA CAGACATCAGTGCTCACAAGCTCATGTGTCACATCACTGATGCGCATGAT GAAAAACACCTGCAGCGCCAACAATGCCCTCATTTTCAAGTGTACGCTGT GTCTGATGATGCCTGTCGTGAAGACGTGCAGTGCACTTGTGCCCTACATT TGCTTTCAAATCCACACACAGGCGTGATTTGTGCGGTGTGTCTTGTACCA GGGAGTACTGAAGCTGACTGAGCATCGCAACGACACACTGCGGCCTGCTT TTTGGCCTATCTAAATATACGTGAGCTATGGTAATGTCATGTGATCTCTC AGTCACTTGTGAGAAAGTATCTCACGTTTGCTCCCTCGATTTCGCTGCGT TTGCTCCCAACTGCAGAATGAAGACGATGGCGCAGCGCCGACTGGCTTTC AAACCGCCGCAACCATGGCACATTTCACAGCGCGCCAATAAATCGAGCAC TGCTGCGGTGGCCGGCACGGACGCAGACACACCTGCCGTAACCGCAACTG CTGCGCCGTCCGCACCTGCGAGTGACACTGACTCTATCATCAGCAGCAGT GCTGGCGACTAGAGAGGAGCACCGCAGCAAAATATGACCAGTAAAGACAA CGGCACCACCAGCAGCGCAACTCACCGCTGCACGGTACGTTGCTCAACAG CGGAGGTATTGTCCCCGCTGTGCCGTCGCAAGCGTTGAGTGTGGGAGCTG GGCGCAATTAGAGTGAAGCCCGCAGTACGCTGTTGTGAGGCAGGCCCTGT GCCAAGTAGTAAATGGTGAGGGGAGGTGTGTGTGTGTGTGGGGGGGGGGG GGGGGGGTCAAGTCTGTGTGCAAGCGC
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Coding sequence (CDS) from alignment at Contig_157:312068..315394-

>mRNA_16374 ID=mRNA_16374|Name=jgi.p|Trimin1|353341|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1560bp|location=Sequence derived from alignment at Contig_157:312068..315394- (Tribonema minus UTEX_B_3156 )
ATGAAGGGGGGTGCTGCTGTCGACGCCACCGCATTTGGAGCTGGCGCCAC
TTCTTCTGCCGCTGCCGCCGTCGCCGCCGCCCCCCAGCAGTACCACCAGC
AGCACCACCAGCAGTACCACCAACAGCACCACCAGCAGCACCAACAGCTG
CAGCCGCACCACCACCACCACCACCAGCAGCAGCAGCCGCAACAGCAGCA
GCCGCAGTACCCCCAGCCGCAGCCGCAGCACCACCAGCACCAGCACCAGC
AGCAGCAGCAGCAGGCGCAGCAGCACCGGCAGCCGCAGCAGCACGGACAG
CAGCAGCAGCAGCAGCCGCAGCAGCCACCGGTGCACGCAAGCTGGCAGGA
GTTACGCCCAGATCCGCGTGTGCTGGACCTTTACTATTCCATGGACGACC
ATGTGCAGAGCCTGCTGGGCAGGATCGCGGCTGCCAGGGCTCGGCTCCTG
AACACTGCTGACCGGTCGCAATGGTCGCAGCAGCAGCGGCAACAGCAGCT
CGATGCCTTCAATAAACGTGCGGCAGCGCTCATCGCCGAGGAGCAGCGCT
TGCAGCAGGACTTCAGAGGCGTCACCGTCCACCAGATGTGGCAGGCGGAG
GCAGACAGGCGCGCCGACTTTCTGCGCTACGCCAACAAAACCGCTTTCGT
GGTGCACGAGAGCTGGATGCAGTTCGAGCGCTGGAGGCAGATCTCGAATC
TGAAGGTTGACTGCACCTTTGCCACGCCGGAGCAGCGGGCGGAGCTGGCG
GAGTGGTCACGCAGGCAGGAGCACAAGTGGCGCGCCAAGGTGGACACCTG
GCTGCAAGATGAGGTGGCAGAGCTGGAGGGCGACTGGCGCCAGCTGGAGG
CCTGGGCTGCACGCAGGGGGGTATGTGTGACGCGTGCCCCCTACAATGTG
GCCGGCGCACCCCATGCGTCGCAGCAGCAGCAGCAGCAGCAGGACCAGCA
GGTGCGGCAGCAGCAGCCACGGCAGCAGCAGCCACAGCAGCAGCAGCAGC
AGCGGGTTCCGCAGCAGCAGCAGGAGGGCCGGCAGGTGCAGCAGCAGCAG
CAGCAGCAGCCACAGCAGCAGCGGCAGCAGCGGGTGCTGCAGCAGCAGGA
ACATGAGCAGCGCCAGCCACAGCAGCGCCCGCCGCCGCAGCAGCAGCAGC
GGGCACAGCAGCAGCAGCAGCGGCGCGCGCAGCAGCAAGAGCAGCAGCAG
CAGCAGCAGCAGCACGAGCCCCCTCACCTGAGCGAGACTGAGCCTGGGCA
GCAGGTCCTGCAAGAGCTTGCAGGCGGGCCTCAGGCTGAGTCGGCGGCAG
AGGCGGATGGTACCCCTGCAGCTGTGCACAATGATGCGCCCACTGCAGCC
GAAGAGTCAGAGGCGGAGGCGACTCGTGCAGCTGTGCAAGCAGACGGCTA
TGTGTCCGACGCCTCTGCAGAATATGAGCGCGCCAATAAATCGAGCACTG
CTGCGGTGGCCGGCACGGACGCAGACACACCTGCCGTAACCGCAACTGCT
GCGCCGTCCGCACCTGCGAGTGACACTGACTCTATCATCAGCAGCAGTGC
TGGCGACTAG
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