mRNA_16346 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353330
Unique NamemRNA_16346
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|353330 vs. uniprot
Match: A0A835ZE59_9STRA (Leucine-rich repeat-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE59_9STRA)

HSP 1 Score: 539 bits (1389), Expect = 1.660e-183
Identity = 488/488 (100.00%), Postives = 488/488 (100.00%), Query Frame = 3 
Query:  111 MRLTADVILRARASLNALRERELDLRGHKIPIIENIGVTQDQFDTIDFSDNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHISVLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVKKEERARAERLFQSAAGRAMEEDIALQAKTFVPGGAARAPLTPAQRTQVIAMIQRAMTTEEIDRLERMLEAGIYPAERKELDAAAAAAAPAXXXXXXXXXXXXXXXXXPAAPKPTMTGFVPASKPAXXXXXXXXXXXXXAAXXXXXXXXXXXXXXXXXXXPNGVHSEAPKXXXXXXXXXXXXAAXXXXXXAPQAMPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMXXXXXXXXXDDLTAEDVAAMKVADLKKALTARGLATSGLKAALQERLLAAIQT 1574
            MRLTADVILRARASLNALRERELDLRGHKIPIIENIGVTQDQFDTIDFSDNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHISVLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVKKEERARAERLFQSAAGRAMEEDIALQAKTFVPGGAARAPLTPAQRTQVIAMIQRAMTTEEIDRLERMLEAGIYPAERKELDAAAAAAAPAXXXXXXXXXXXXXXXXXPAAPKPTMTGFVPASKPAXXXXXXXXXXXXXAAXXXXXXXXXXXXXXXXXXXPNGVHSEAPKXXXXXXXXXXXXAAXXXXXXAPQAMPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMXXXXXXXXXDDLTAEDVAAMKVADLKKALTARGLATSGLKAALQERLLAAIQT
Sbjct:    1 MRLTADVILRARASLNALRERELDLRGHKIPIIENIGVTQDQFDTIDFSDNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHISVLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVKKEERARAERLFQSAAGRAMEEDIALQAKTFVPGGAARAPLTPAQRTQVIAMIQRAMTTEEIDRLERMLEAGIYPAERKELDAAAAAAAPAXXXXXXXXXXXXXXXXXPAAPKPTMTGFVPASKPAXXXXXXXXXXXXXAAXXXXXXXXXXXXXXXXXXXPNGVHSEAPKXXXXXXXXXXXXAAXXXXXXAPQAMPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMXXXXXXXXXDDLTAEDVAAMKVADLKKALTARGLATSGLKAALQERLLAAIQT 488
[Close]
BLAST of jgi.p|Trimin1|353330 vs. uniprot
Match: A0A7S3XKJ1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKJ1_HETAK)

HSP 1 Score: 241 bits (615), Expect = 3.870e-69
Identity = 132/227 (58.15%), Postives = 167/227 (73.57%), Query Frame = 3 
Query:  111 MRLTADVILRARASLNALRERELDLRGHKIPIIENIGVTQDQFDTIDFSDNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHISVLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVKKEERARAERLFQSAAGRAMEEDIALQAKTFVPGGAA---RAPLTPAQRTQVIAMIQRAMTTEEIDRLERMLEAGIYP 782
            MRLTADVILRA A++N  +ERELDLRG+KIP+IEN+G TQD FDTIDFSDNEI+KL+NFPRM RLTTLL +NN I++I + I  ++PNLS L      I  L+ELD L   ++LT+LSLLENPV R QHYRLYVIH+ P+LK LDF KVK++ER  A RLF+S AG+ M++D+  + KTF  G      +  LT  Q+  +   I+ A T EE+D+LER L+AGI P
Sbjct:    1 MRLTADVILRADATINPCKERELDLRGYKIPVIENVGATQDMFDTIDFSDNEIKKLENFPRMERLTTLLFNNNHISKIAESIKDQVPNLSTLXXXXXRIQHLAELDSLQGLRKLTLLSLLENPVVRRQHYRLYVIHRCPALKYLDFRKVKQQERQEAARLFKSKAGQQMQDDVQKEIKTFQAGEKQEREKKRLTEDQKNLIREAIKNATTPEEVDKLERQLKAGIMP 227
[Close]
BLAST of jgi.p|Trimin1|353330 vs. uniprot
Match: D8LSC4_ECTSI (U2 small nuclear ribonucleoprotein A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC4_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 7.870e-69
Identity = 135/229 (58.95%), Postives = 167/229 (72.93%), Query Frame = 3 
Query:  111 MRLTADVILRARASLNALRERELDLRGHKIPIIENIGVTQDQFDTIDFSDNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHISVLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVKKEERARAERLFQSAAGRAMEEDIALQA---KTFVPGGAA--RAPLTPAQRTQVIAMIQRAMTTEEIDRLERMLEAGIYP 782
            MRLTAD+I+ ARAS+N   ERELDLRG+KIP+IEN+GVTQDQFD +DFSDNEI+KLDNFPR  RL++LLL NN +++I +D+G  LPNLSCL+LTNN +S L+EL  LG C +LTMLSLL N V   Q+YRLY+I+ IPSLK LDF KV  +ER  A RL +S AG+AM +D+A QA   KTF PG  A     LT   R      I +A T EEI+ L + ++AGI P
Sbjct:    1 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLIPSLKQLDFQKVTVKERESAVRLARSQAGQAMIQDVAQQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIP 229
[Close]
BLAST of jgi.p|Trimin1|353330 vs. uniprot
Match: A0A7S2G9L1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G9L1_9STRA)

HSP 1 Score: 231 bits (589), Expect = 5.660e-67
Identity = 127/234 (54.27%), Postives = 161/234 (68.80%), Query Frame = 3 
Query:  111 MRLTADVILRARASLNALRERELDLRGHKIPIIENIGVTQDQFDTIDFSDNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHISVLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVKKEERARAERLFQSAAGRAMEEDIALQAKTFVPGGAA------RAPLTPAQRTQVIAMIQRAMTTEEIDRLERMLEAGIYPAERK 794
            +RLTADV   A   +N  +ERELDLRG KIP IEN+GVTQDQFD +DF+DNEI+++DNFP   RL+TLLLSNN + R+   + ++LPNL CL         LSE+D L  C +LTMLS + NP+ R QHYRLYVI K+P LKALDF KVK  ER  A +LF+SAAGR M++D+  ++KTF PG          A LT  Q+ QV A+I  A T EE+DR+ER L+AG+ P  +K
Sbjct:    2 VRLTADVFAHAVPRMNCCQERELDLRGLKIPAIENVGVTQDQFDVLDFTDNEIKRVDNFPTFKRLSTLLLSNNHVTRLSPTLSEQLPNLDCLXXXXXXXXNLSEVDNLIGCTKLTMLSFVNNPIIRRQHYRLYVIAKLPQLKALDFVKVKAIEREEAAKLFRSAAGRLMQQDVEAESKTFTPGEDIPSTTNPMANLTAEQKDQVRAVIAAASTPEEVDRIERQLKAGVIPTLKK 235
[Close]
BLAST of jgi.p|Trimin1|353330 vs. uniprot
Match: A0A7S2WMG2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMG2_9STRA)

HSP 1 Score: 230 bits (586), Expect = 6.020e-67
Identity = 128/232 (55.17%), Postives = 164/232 (70.69%), Query Frame = 3 
Query:  111 MRLTADVILRARASLNALRERELDLRGHKIPIIENIGVTQDQFDTIDFSDNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHISVLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVKKEERARAERLFQSAAGRAMEEDIALQAKTFVPG----GAARAPLTPAQRTQVIAMIQRAMTTEEIDRLERMLEAGIYPAERK 794
            +RLTADV+    A +N   +RELD+RG K+P IENIGVT+DQ+DT+DFSDNEI+KL+NFPR +RL+TLLL+NN IARI   +G++L +L            LSE+D L  C +LT LSL+ NPV R QHYRLYVIHK+PS+K LDF KVK +ERA A RLF+SAAG+ M++D+  +A TF PG        A  T  Q  QV A+I  A T EE+DR+ER L+AGI P+ +K
Sbjct:    2 VRLTADVLQNCFARINPCLDRELDIRGLKVPAIENIGVTKDQYDTLDFSDNEIKKLENFPRFSRLSTLLLNNNHIARISPTLGEQLLSLQXXXXXXXXXXQLSEVDHLVGCTKLTTLSLVNNPVARRQHYRLYVIHKLPSVKVLDFSKVKPQERADAARLFKSAAGKLMQQDVDAEASTFTPGEDMPSNPMANFTEEQMAQVRAVIAAATTPEEVDRVERQLKAGIIPSLKK 233
[Close]
BLAST of jgi.p|Trimin1|353330 vs. uniprot
Match: A0A7S2F7F7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F7F7_9STRA)

HSP 1 Score: 234 bits (596), Expect = 2.790e-66
Identity = 137/238 (57.56%), Postives = 165/238 (69.33%), Query Frame = 3 
Query:  111 MRLTADVILRARASLNALRERELDLRGHKIPIIENIGVTQDQFDTIDFSDNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHISVLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVKKEERARAERLFQSAAGRAMEEDIALQAKTFVPGGAARAPLTPAQ-----RTQVIAMIQRAMTTEEIDRLERMLEAGIYPAERKELDAA 809
            MRLT+DV+L A A LN   ERELDLRG KIP IENIGVTQD +DT+DF+DNEI+KL+NFP   RL+ LLLSNN +  I  +I +K+P+L  LVLTNN I+ LSE+D L  C  LT LSLL NPV R QHYR YVI K+P LK LDF K+K +ER  AERLF+SAAG+ M+ED+ L++K      A  A    AQ     R QV A I  A T +EIDR+ER L+AGI P  +  L AA
Sbjct:    1 MRLTSDVLLNAHARLNPCSERELDLRGLKIPAIENIGVTQDLYDTLDFTDNEIKKLENFPNTKRLSCLLLSNNHVKIINPEISEKIPSLRTLVLTNNKITNLSEVDNLAACANLTELSLLSNPVIRRQHYRFYVISKLPQLKVLDFSKIKPKERQEAERLFRSAAGKLMQEDV-LKSKEIETDEAETATHNMAQLNEVDRAQVRAAIAAASTPQEIDRIERQLKAGILPTVKNALPAA 237
[Close]
BLAST of jgi.p|Trimin1|353330 vs. uniprot
Match: UPI001884F496 (U2 small nuclear ribonucleoprotein A'-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884F496)

HSP 1 Score: 220 bits (561), Expect = 2.360e-63
Identity = 119/233 (51.07%), Postives = 168/233 (72.10%), Query Frame = 3 
Query:  111 MRLTADVILRARASLNALRERELDLRGHKIPIIENIGVTQDQFDTIDFSDNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHISVLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVKKEERARAERLFQSAAGRAMEEDIALQAKTFVPGG----AARAPLTPA----QRTQVIA-MIQRAMTTEEIDRLERMLEAGIYP 782
            ++L+ D+I +A   +N +RERELDLRG+KIP+IEN+G T DQFDTIDFSDNEI+KLD FP + RL +L+++NN I R+G+D+   LP+L  L+LTNN +  L++LDPLG   QLT LSLL NPV   QHYRLY + ++P L+ LDF +VK++ER +A  LF+S  G+ M+++I+ +AKTFVPG     A +A   PA    + T++I   I RA + +EI+RL +ML +G+ P
Sbjct:    2 VKLSVDLIQQAYQHINPVRERELDLRGYKIPVIENLGATLDQFDTIDFSDNEIRKLDGFPLLKRLKSLMMNNNRIVRVGEDLHSSLPSLETLLLTNNSLQELADLDPLGQLPQLTTLSLLGNPVAMRQHYRLYAVFRMPHLRVLDFRRVKQKEREQANALFKSKKGKQMQKEISKRAKTFVPGAGLESAVQARAVPAGPTAEDTRLIKEAIARATSLQEIERLNQMLRSGVVP 234
[Close]
BLAST of jgi.p|Trimin1|353330 vs. uniprot
Match: A0A4D9D4U7_9STRA (SAP domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4U7_9STRA)

HSP 1 Score: 226 bits (575), Expect = 7.530e-63
Identity = 123/229 (53.71%), Postives = 162/229 (70.74%), Query Frame = 3 
Query:  111 MRLTADVILRARASLNALRERELDLRGHKIPIIENIGVTQDQFDTIDFSDNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHISVLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVKKEERARAERLFQSAAGRAMEEDIALQAKTFVPGGAARAP----LTPAQRTQVIAMIQRAMTTEEIDRLERMLEAGIYPA 785
            MR+TADV++ ARA +N ++ERELDLRG KIP+IEN+GVTQDQFDT+D SDNEI++LDNFPRM RL TLLL NN IAR G  +G+++  L  LVLTNN ++ LSE+D L    +L  LSL++NPV R+ HYRLY++HK+P L  LDF KVK +ER  A++LFQS AG+     IA + K        +A     +T  ++    AMI +A T EE++R+ER L AGI+ A
Sbjct:    1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLAAESTGKAREKRVMTEEEKRLAQAMIDKATTPEELERVERQLRAGIFKA 229
[Close]
BLAST of jgi.p|Trimin1|353330 vs. uniprot
Match: UPI0018D1E65C (U2 small nuclear ribonucleoprotein A' n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D1E65C)

HSP 1 Score: 219 bits (558), Expect = 7.750e-63
Identity = 116/231 (50.22%), Postives = 162/231 (70.13%), Query Frame = 3 
Query:  111 MRLTADVILRARASLNALRERELDLRGHKIPIIENIGVTQDQFDTIDFSDNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHISVLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVKKEERARAERLFQSAAGRAMEEDIALQAKTFVPGGAARAP----LTPAQRTQVIAMIQRAMTTEEIDRLERMLEAGIYPAER 791
            ++LT ++I  +   +NA R+RELDLRG+KIP IEN+G T DQFDTIDFSDN+++KLD FP + RL  LLL+NN I RIG+++ + LPNL  L+LTNNH+  L +LDPL    +LT LSLL NPV   QHYR YV  K+P L+ LDF K+K++ER  A  LF+S  G+ M+++I  +AKTFVPGG    P    LTP +  ++   I+ A + +E+++L RML++G  P ++
Sbjct:    2 VKLTTELINNSMQYMNACRDRELDLRGYKIPQIENMGATLDQFDTIDFSDNDVRKLDGFPLLKRLKCLLLNNNRIVRIGENLEQYLPNLESLILTNNHLQELGDLDPLATLPKLTSLSLLHNPVANKQHYRAYVAFKLPELRLLDFRKIKQKERDEANTLFKSKKGKEMQKEIQKKAKTFVPGGNMPDPKVTNLTPQEIHKIREAIKNASSLQEVEKLTRMLQSGQIPGQK 232
[Close]
BLAST of jgi.p|Trimin1|353330 vs. uniprot
Match: H1A3I9_TAEGU (LRRcap domain-containing protein n=18 Tax=Neognathae TaxID=8825 RepID=H1A3I9_TAEGU)

HSP 1 Score: 218 bits (556), Expect = 9.720e-63
Identity = 120/234 (51.28%), Postives = 165/234 (70.51%), Query Frame = 3 
Query:  111 MRLTADVILRARASLNALRERELDLRGHKIPIIENIGVTQDQFDTIDFSDNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHISVLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVKKEERARAERLFQSAAGRAMEEDIALQAKTFVPGGAA-----RAPLTPAQRTQVIAMIQRAMTTEEIDRLERMLEAGIYPA-ERK 794
            ++LTA++I +A    NA+R+RELDLRG+KIP+IEN+G T DQFD IDFSDNEI+KLD FP + RL TLL++NN I RIG+++ + LP+L+ L+LTNN+I+ L ELDPL   + LT LS+L NPVT  +HYRLY+IHK+P ++ LDF KVK +ER  AE++F+   G  + +DIA +AKTF PG        +   +P     + A I  A T  E++RL+ +L+AG  P  ERK
Sbjct:    2 VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLMNNNRICRIGENLEQALPSLTELILTNNNIAELGELDPLSSIKSLTYLSVLRNPVTNKKHYRLYLIHKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRAKTFNPGAGLPTDKKKTGPSPGDVEAIKAAIANASTLAEVERLKGLLQAGQIPGRERK 235
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353330 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZE59_9STRA1.660e-183100.00Leucine-rich repeat-domain-containing protein n=1 ... [more]
A0A7S3XKJ1_HETAK3.870e-6958.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8LSC4_ECTSI7.870e-6958.95U2 small nuclear ribonucleoprotein A n=1 Tax=Ectoc... [more]
A0A7S2G9L1_9STRA5.660e-6754.27Hypothetical protein (Fragment) n=2 Tax=Florenciel... [more]
A0A7S2WMG2_9STRA6.020e-6755.17Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2F7F7_9STRA2.790e-6657.56Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
UPI001884F4962.360e-6351.07U2 small nuclear ribonucleoprotein A'-like n=1 Tax... [more]
A0A4D9D4U7_9STRA7.530e-6353.71SAP domain-containing protein n=2 Tax=Monodopsidac... [more]
UPI0018D1E65C7.750e-6350.22U2 small nuclear ribonucleoprotein A' n=1 Tax=Plut... [more]
H1A3I9_TAEGU9.720e-6351.28LRRcap domain-containing protein n=18 Tax=Neognath... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_157contigContig_157:25921..30571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353330|estExt_Genemark1.C_Ctg_1570005
BRITEko00000,ko00001,ko00002,ko03041
KEGG ModuleM00352
KEGG Pathwayko03040,map03040
KEGG koko:K11092
DescriptionU2 snRNA binding
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG4886@1|root,KOG1644@2759|Eukaryota
Evalue3.75e-71
Seed ortholog2880.D8LSC4
Hectar predicted targeting categoryother localisation
TranscriptId353652
TrackFilteredModels1
ProteinId353330
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353330gene_16346Tribonema minus UTEX_B_3156 geneContig_157 25921..30571 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353330Trimin1|353330|estExt_Genemark1.C_Ctg_1570005Tribonema minus UTEX_B_3156 polypeptideContig_157 26440..30461 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16346_4exon_16346_4Tribonema minus UTEX_B_3156 exonContig_157 25921..27487 -
exon_16346_3exon_16346_3Tribonema minus UTEX_B_3156 exonContig_157 28182..28431 -
exon_16346_2exon_16346_2Tribonema minus UTEX_B_3156 exonContig_157 29662..29803 -
exon_16346_1exon_16346_1Tribonema minus UTEX_B_3156 exonContig_157 30435..30571 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_16346UTR3_16346Tribonema minus UTEX_B_3156 three_prime_UTRContig_157 25921..26439 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16346CDS_16346Tribonema minus UTEX_B_3156 CDSContig_157 30435..30461 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_16346UTR5_16346Tribonema minus UTEX_B_3156 five_prime_UTRContig_157 30462..30571 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16346 ID=mRNA_16346|Name=jgi.p|Trimin1|353330|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2096bp|location=Sequence derived from alignment at Contig_157:25921..30571- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGGTGCTAGGGGTGCTGCCGCGTCTCTGCCAGACTAGGCAAGCAGCAGGA
GCGGAGTGGATCGGACCGCAAGGGGGAGTGGGGATCACAGGCACTGGCCC
ATAGAAGGCCATGCGTTTGACTGCGGATGTCATTTTGCGGGCGCGGGCGT
CGCTGAATGCGCTGAGGGAGAGGGAGCTGGACCTCAGGGGGCACAAAATA
CCAATCATTGAAAACATTGGGGTGACGCAGGATCAATTTGACACCATTGA
TTTCAGCGACAATGAAATACAGAAGCTCGACAACTTCCCGCGCATGACGC
GCCTGACCACGCTGCTGCTGAGCAACAACGTCATCGCGCGCATCGGCCAG
GACATTGGCAAGAAGCTGCCGAACCTGTCGTGCCTCGTGCTGACCAACAA
CCACATCTCGGTGCTGAGCGAGCTTGACCCCCTGGGGTACTGCCAGCAGC
TCACGATGCTGTCGCTGCTGGAGAACCCCGTCACGCGCGCGCAGCACTAC
CGCCTCTATGTGATACACAAAATTCCCAGCCTCAAGGCGCTGGACTTCTG
CAAGGTCAAGAAGGAGGAGCGCGCGCGCGCGGAGCGCCTCTTCCAGTCCG
CCGCAGGCCGCGCCATGGAGGAGGACATTGCGCTGCAGGCCAAGACGTTC
GTGCCGGGCGGCGCCGCGCGCGCGCCGCTCACGCCCGCGCAGCGCACGCA
GGTCATCGCCATGATCCAGCGCGCCATGACGACGGAGGAGATCGACCGCC
TAGAGAGGATGCTGGAGGCGGGCATCTATCCCGCGGAGAGGAAGGAGCTG
GATGCTGCTGCCGCGGCGGCAGCGCCGGCGCCGGCAGCAGCAGCGGCGCC
GGCGGCGGCGGCGGCAGCGGCGCCGGCGAAGCCCGCTGCGCCCAAGCCGA
CGATGACCGGTTTTGTCCCCGCGTCGAAGCCGGCGGCTGCGGCGGAGGAG
CCGGCGGCGGCGGCGGCAGCGGCGGCAGCACCGGCGAGCAAGCCAGCGGC
AGCGGCCGAGGGGGCGCCAGCTGCGGCGGCCGCAGCGCCGAATGGCGTGC
ACAGCGAGGCGCCGAAGGCGCCAGCGTCCGGAGCGGCGGCGCCGAGTGCG
CCGGCAGCAGCGGCGGCGGCAGCGGCAGCACCGCAGGCGATGCCACCACC
GGCTGCGCCTGCCGCAGCGGCTGCACCCGCCGAACCTGCGCCCACACAAC
CAGCACCTGCCGCCGCCGCTGCTGCTGCACCCGCGCCCTCGGCAGCAGCG
GCGGCGCCCGAACCTGCAGCCGCGGCGCCCGCGCCAGCGGCGGCGGCAGC
AGCGGAGCCGATGGCCATGGCTGTGGACGGTGCCGCAGCGGACGCAGGGG
CCGACGCCATGGACGTGGATGCGGCTGAGGGGGGCGGGGAAGGGGGGGGG
GGAGGGGACGCGATGGATGAGGGGGAGGGGGGCGGTGAGGGGGACGATCT
GACGGCGGAGGATGTCGCCGCGATGAAGGTGGCGGACCTGAAGAAGGCGC
TCACGGCGCGTGGCCTCGCGACGAGCGGGCTCAAGGCGGCGCTGCAGGAG
CGGCTGCTGGCGGCGATCCAGACATAGTGCCGAGCGCTGCTGCTGCTGCC
GCCGCTGCGCGCCGCGCCGCGCACGAGGCACCCGCGCGCTCGCAGTGCGC
CCCTTCTGTTGCGGAGGGTCGTAAAGCGCGGCGGAACGGCGGCCGTGATG
CGTCTGTGGAGGTGGCGGCAGCGGCGGCGGCTGCGGCAGCTGCAGCGGCG
CCGCGGTTCTCGCTTACTGGAAGTCGGTCACGTCACTTGCTGTTTTCGAC
ATCTGAGCAGGCTGCAGGGCCAGTGTGGAACGGGTGTACCTGGGCGCTGC
TGCTGCCGCTGCAGTGCGTCCGTGGTACACACCAGCAGTGCTCAACGCCA
GCACGGCGGCTCTGCAGCCGCGCACTCGCGCCGGCGCGGCGCATTTTTTG
CACGCTCTGGCGGCACATGACTGCAGAGTGGCGGCACATGATCGCAGAGC
GCCGTGCATCAAGGGCTTTAATGCGTTGCCGTGCTGCTAATTGTTCGGAG
CGCTGTCACAGCTCGCCGAGCCTGCCACCTTCCAACATGAATAAAC
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protein sequence of jgi.p|Trimin1|353330

>Trimin1|353330|estExt_Genemark1.C_Ctg_1570005 ID=Trimin1|353330|estExt_Genemark1.C_Ctg_1570005|Name=jgi.p|Trimin1|353330|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=489bp
MRLTADVILRARASLNALRERELDLRGHKIPIIENIGVTQDQFDTIDFSD
NEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHIS
VLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVK
KEERARAERLFQSAAGRAMEEDIALQAKTFVPGGAARAPLTPAQRTQVIA
MIQRAMTTEEIDRLERMLEAGIYPAERKELDAAAAAAAPAPAAAAAPAAA
AAAAPAKPAAPKPTMTGFVPASKPAAAAEEPAAAAAAAAAPASKPAAAAE
GAPAAAAAAPNGVHSEAPKAPASGAAAPSAPAAAAAAAAAPQAMPPPAAP
AAAAAPAEPAPTQPAPAAAAAAAPAPSAAAAAPEPAAAAPAPAAAAAAEP
MAMAVDGAAADAGADAMDVDAAEGGGEGGGGGDAMDEGEGGGEGDDLTAE
DVAAMKVADLKKALTARGLATSGLKAALQERLLAAIQT*
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mRNA from alignment at Contig_157:25921..30571-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16346 ID=mRNA_16346|Name=jgi.p|Trimin1|353330|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4651bp|location=Sequence derived from alignment at Contig_157:25921..30571- (Tribonema minus UTEX_B_3156 )
GGGTGCTAGGGGTGCTGCCGCGTCTCTGCCAGACTAGGCAAGCAGCAGGA
GCGGAGTGGATCGGACCGCAAGGGGGAGTGGGGATCACAGGCACTGGCCC
ATAGAAGGCCATGCGTTTGACTGCGGATGTCATTTTGGTGAGTGTGGCGA
GTGCAGCAGGCGTCGTTTCCCTGTCGCAGTGATCTCGTTTGCAATGAGCT
GCTTGCCGCAGCAGCATTGCAGCTCCCTTGCCGCCACACCCTAGAGCACC
CTCAGCTTCCCCAAGATCGCTTCCAATCCTCGATGGTGTTTAGCGGGCGC
AGCCGGCCAAAGCGCTGCGCTTTATTGTCGACGTGTGTGTGTCACATTTT
CCTGCTTTGCCACTGTCATCAATGGATGCATGCTGCCAGCTGTGGCTCCC
TTCACAATGGTCGGTGCACTGAGCTGCGCTGCACCTGATAAAGAGCAGAC
TTGCCTGCCCCGTGCAATGCCTGCTGCAAAAGAATTCAGTGCTACAGATG
ATCGCGTCGCGTATTCTGTGCTGCTCATCCTCTGGGTCTACTACCTAGCT
CGAGCTCCCGCATGCGTTGCAGTGCCAAAGCGCTCTGATGTCGCTGCAGC
GTTGGGTTGCCAACGCCTGAGGTCACTTCTTGCTTCTGCCAACAACTCTT
TGATTGGCATGTGATGGACAAAGTGATGTGGTCACATTATATCAAGGTGC
AGATGGCACACGCTGCACTGCATCCACGAGCTGTGCATTATCGAGCTTGC
TGCTGCGCTGTGCTGCAGCGGGCGCGGGCGTCGCTGAATGCGCTGAGGGA
GAGGGAGCTGGACCTCAGGGGGCACAAAATACCAATCATTGAAAACATTG
GGGTGACGCAGGATCAATTTGACACCATTGATTTCAGCGACAATGAAATA
CAGAAGCTCGGTGAGTGGCGCCACAATTTCAACTGTGTCCAATGTTCAAC
CCCTAGCAATTGCGAAGCACTCGTAATCTGGCAGCAGCAAGTTGGGCAGA
TGAGCGCCAAGGCTGATGACATTCATATTGCCATGCAGGCATTTTTCAGT
TCTGATAGTTGCGCAATAGTGGGTTATGATGCCAGCCAGCCAGCCTAGAC
ACTCACTGTTCTGCTTCATAATTTAGATCCACAACTGTAACTGTACAACT
ATGTGTCTGTGCGCTGAGACGACAGCGCTTGCCGCATTTTGAAACTAGCC
ACCGGTATGGTTGCATCACTGCCGTGTTTGCGTGTCCTGCTACCCAGAAT
GTTGCTGCTGAATCACGGGGCCCTGCCTATCTCGTTCACTTTCGTCGCTG
CGAGCTGGCCGCGTGATGCTAGCTTTTGCATGTGTCGTGTTGTGGAGCAC
ACCCTGATTATGTCCATCAGGGGCATGGCCTGCAGCAAAATTCGTATAAT
TTGAGTTTGAAGTTGACATGCCACATCTGGCATTTCAGGTCTGAGTTCAC
AGCCATGCCTGCCTGCTTTCATCACCGCTTTGGTGAGACTGAGAGAGCTG
TCACCCACAGTATTACTGGCCACTGCACTGCCAGTGTATGTCAACGGGCT
GAAGCTCTCAGCGCAGGCCCCTGTAAAAGTTGCGTAACATGTGAACTTTG
TGCTGCCTCCTTCGCTTCGCACAAAATGTGTGTGTTGTGGCTGCCATAGC
TAGCAGCAGCTCGCTATGACGATGCCCAAATCCACTGAAAGATTCATTAC
AACACGTCAGAAGCTCGCTGTCCAAAGCATTCGAGGTATATACGATGCCA
TAGAGCTGGTATACTCACTGACACCATCTGCTGCGCAGTTACACTGTGTG
CCGTGTGCGTAACTCTCCGCCGTTTTGCGCCTCGCAATGCTGCCGCTGTT
GCTGAGCAGGGGTAGGCTTGCGTACAAGTCGAAACAAGCGTGTGTGCTAA
GCGCAGTTGCAGCCTCGTTCGCACCAGAGGTGTTGCTATGTTTTCAGATC
AAATTCATCATCACCTCCGCCGCGCTGCGCGCAGCAGACAACTTCCCACA
ACGCTGTGTTGCTCAGCAACAGCTTGCCTGCGCGCACCGCCCGCGCCATT
GCCACTTTGAATCATGCCTAGGGTTAGGGTTTCACCTGATCATCACCACC
ACCTTGGCACCCCCTCCTCGGCCCTGCCCCGCGTGCGCAGACAACTTCCC
GCGCATGACGCGCCTGACCACGCTGCTGCTGAGCAACAACGTCATCGCGC
GCATCGGCCAGGACATTGGCAAGAAGCTGCCGAACCTGTCGTGCCTCGTG
CTGACCAACAACCACATCTCGGTGCTGAGCGAGCTTGACCCCCTGGGGTA
CTGCCAGCAGCTCACGATGCTGTCGCTGCTGGAGAACCCCGTCACGCGCG
CGCAGCACTACCGCCTCTATGTGATACACAAAATTCCCAGGTGAGCGAAC
CCTCACCGTAAAAACTTCAATCATAATTCAACCCTAATCCTGCAAGATCC
CCAGGTGCGTGCCTTCTGTGCGCAAGCAAGAGGCATCTGGTGGTGCTGTG
TCTGTAGCACCGAGGCACTGAGTGAGTCTCCAAGTGACTCTCAGAGTGAG
TCGCAGCACTACCGCCTCTACGTCATACACATGATCTCTAAGTAGGTGCG
CGAACCCTACCCGTAATCCTGACCCTAACCTAATGTTCATCCCACAAGAC
CCCCAGGTGCGTGGCTTCTGTGCGCAAACAACAGGGATCTGGTGATACTC
GCGTGTAATATTGAGTCACTGATTGAGTCTCTGAGTGACTCTTTGAGTGA
GTCTCAGATGGCGCTTGGGCATGGTAGGAGTGACTGGCGGCCTAAATCGA
CATGGCAGTACCAGAAGATGGAGCAACAGCAAGCAGATCTTCCTTCTGGC
AGTAGTGCTACTTGTGCAGAAGCGTGGTTGGCGTTGAAACTAGAAGATGG
AGCCGCAGCATCAATGCTGCAGTGCACTGCGTCCCCCAATACGCATCTGG
GCGCGCACAGGCTCCGTCTTGTTGCATGCGCAGCAACACACAGCCGCCAT
CTCTTCAACCCAAACCGTCAACATCGTCAACCTCAACCCGTGACGCTCCC
TCCGCCGCGCATCCGCGCACGCACGCGCGCGCAGCCTCAAGGCGCTGGAC
TTCTGCAAGGTCAAGAAGGAGGAGCGCGCGCGCGCGGAGCGCCTCTTCCA
GTCCGCCGCAGGCCGCGCCATGGAGGAGGACATTGCGCTGCAGGCCAAGA
CGTTCGTGCCGGGCGGCGCCGCGCGCGCGCCGCTCACGCCCGCGCAGCGC
ACGCAGGTCATCGCCATGATCCAGCGCGCCATGACGACGGAGGAGATCGA
CCGCCTAGAGAGGATGCTGGAGGCGGGCATCTATCCCGCGGAGAGGAAGG
AGCTGGATGCTGCTGCCGCGGCGGCAGCGCCGGCGCCGGCAGCAGCAGCG
GCGCCGGCGGCGGCGGCGGCAGCGGCGCCGGCGAAGCCCGCTGCGCCCAA
GCCGACGATGACCGGTTTTGTCCCCGCGTCGAAGCCGGCGGCTGCGGCGG
AGGAGCCGGCGGCGGCGGCGGCAGCGGCGGCAGCACCGGCGAGCAAGCCA
GCGGCAGCGGCCGAGGGGGCGCCAGCTGCGGCGGCCGCAGCGCCGAATGG
CGTGCACAGCGAGGCGCCGAAGGCGCCAGCGTCCGGAGCGGCGGCGCCGA
GTGCGCCGGCAGCAGCGGCGGCGGCAGCGGCAGCACCGCAGGCGATGCCA
CCACCGGCTGCGCCTGCCGCAGCGGCTGCACCCGCCGAACCTGCGCCCAC
ACAACCAGCACCTGCCGCCGCCGCTGCTGCTGCACCCGCGCCCTCGGCAG
CAGCGGCGGCGCCCGAACCTGCAGCCGCGGCGCCCGCGCCAGCGGCGGCG
GCAGCAGCGGAGCCGATGGCCATGGCTGTGGACGGTGCCGCAGCGGACGC
AGGGGCCGACGCCATGGACGTGGATGCGGCTGAGGGGGGCGGGGAAGGGG
GGGGGGGAGGGGACGCGATGGATGAGGGGGAGGGGGGCGGTGAGGGGGAC
GATCTGACGGCGGAGGATGTCGCCGCGATGAAGGTGGCGGACCTGAAGAA
GGCGCTCACGGCGCGTGGCCTCGCGACGAGCGGGCTCAAGGCGGCGCTGC
AGGAGCGGCTGCTGGCGGCGATCCAGACATAGTGCCGAGCGCTGCTGCTG
CTGCCGCCGCTGCGCGCCGCGCCGCGCACGAGGCACCCGCGCGCTCGCAG
TGCGCCCCTTCTGTTGCGGAGGGTCGTAAAGCGCGGCGGAACGGCGGCCG
TGATGCGTCTGTGGAGGTGGCGGCAGCGGCGGCGGCTGCGGCAGCTGCAG
CGGCGCCGCGGTTCTCGCTTACTGGAAGTCGGTCACGTCACTTGCTGTTT
TCGACATCTGAGCAGGCTGCAGGGCCAGTGTGGAACGGGTGTACCTGGGC
GCTGCTGCTGCCGCTGCAGTGCGTCCGTGGTACACACCAGCAGTGCTCAA
CGCCAGCACGGCGGCTCTGCAGCCGCGCACTCGCGCCGGCGCGGCGCATT
TTTTGCACGCTCTGGCGGCACATGACTGCAGAGTGGCGGCACATGATCGC
AGAGCGCCGTGCATCAAGGGCTTTAATGCGTTGCCGTGCTGCTAATTGTT
CGGAGCGCTGTCACAGCTCGCCGAGCCTGCCACCTTCCAACATGAATAAA
C
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Coding sequence (CDS) from alignment at Contig_157:25921..30571-

>mRNA_16346 ID=mRNA_16346|Name=jgi.p|Trimin1|353330|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1467bp|location=Sequence derived from alignment at Contig_157:25921..30571- (Tribonema minus UTEX_B_3156 )
ATGCGTTTGACTGCGGATGTCATTTTGCGGGCGCGGGCGTCGCTGAATGC
GCTGAGGGAGAGGGAGCTGGACCTCAGGGGGCACAAAATACCAATCATTG
AAAACATTGGGGTGACGCAGGATCAATTTGACACCATTGATTTCAGCGAC
AATGAAATACAGAAGCTCGACAACTTCCCGCGCATGACGCGCCTGACCAC
GCTGCTGCTGAGCAACAACGTCATCGCGCGCATCGGCCAGGACATTGGCA
AGAAGCTGCCGAACCTGTCGTGCCTCGTGCTGACCAACAACCACATCTCG
GTGCTGAGCGAGCTTGACCCCCTGGGGTACTGCCAGCAGCTCACGATGCT
GTCGCTGCTGGAGAACCCCGTCACGCGCGCGCAGCACTACCGCCTCTATG
TGATACACAAAATTCCCAGCCTCAAGGCGCTGGACTTCTGCAAGGTCAAG
AAGGAGGAGCGCGCGCGCGCGGAGCGCCTCTTCCAGTCCGCCGCAGGCCG
CGCCATGGAGGAGGACATTGCGCTGCAGGCCAAGACGTTCGTGCCGGGCG
GCGCCGCGCGCGCGCCGCTCACGCCCGCGCAGCGCACGCAGGTCATCGCC
ATGATCCAGCGCGCCATGACGACGGAGGAGATCGACCGCCTAGAGAGGAT
GCTGGAGGCGGGCATCTATCCCGCGGAGAGGAAGGAGCTGGATGCTGCTG
CCGCGGCGGCAGCGCCGGCGCCGGCAGCAGCAGCGGCGCCGGCGGCGGCG
GCGGCAGCGGCGCCGGCGAAGCCCGCTGCGCCCAAGCCGACGATGACCGG
TTTTGTCCCCGCGTCGAAGCCGGCGGCTGCGGCGGAGGAGCCGGCGGCGG
CGGCGGCAGCGGCGGCAGCACCGGCGAGCAAGCCAGCGGCAGCGGCCGAG
GGGGCGCCAGCTGCGGCGGCCGCAGCGCCGAATGGCGTGCACAGCGAGGC
GCCGAAGGCGCCAGCGTCCGGAGCGGCGGCGCCGAGTGCGCCGGCAGCAG
CGGCGGCGGCAGCGGCAGCACCGCAGGCGATGCCACCACCGGCTGCGCCT
GCCGCAGCGGCTGCACCCGCCGAACCTGCGCCCACACAACCAGCACCTGC
CGCCGCCGCTGCTGCTGCACCCGCGCCCTCGGCAGCAGCGGCGGCGCCCG
AACCTGCAGCCGCGGCGCCCGCGCCAGCGGCGGCGGCAGCAGCGGAGCCG
ATGGCCATGGCTGTGGACGGTGCCGCAGCGGACGCAGGGGCCGACGCCAT
GGACGTGGATGCGGCTGAGGGGGGCGGGGAAGGGGGGGGGGGAGGGGACG
CGATGGATGAGGGGGAGGGGGGCGGTGAGGGGGACGATCTGACGGCGGAG
GATGTCGCCGCGATGAAGGTGGCGGACCTGAAGAAGGCGCTCACGGCGCG
TGGCCTCGCGACGAGCGGGCTCAAGGCGGCGCTGCAGGAGCGGCTGCTGG
CGGCGATCCAGACATAG
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