Trimin1|353324|estExt_Genemark1.C_Ctg_1560035 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353324
Unique NameTrimin1|353324|estExt_Genemark1.C_Ctg_1560035
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length165
Homology
BLAST of jgi.p|Trimin1|353324 vs. uniprot
Match: A0A836CKM1_9STRA (Elongation factor P (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKM1_9STRA)

HSP 1 Score: 329 bits (843), Expect = 4.830e-114
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
Query:    1 MKHVKPGKGGAFNQIELKELMGGTKKTERFRSSETVELAHIDKEEQLDFLYRDGGLLALMNPQTFEQIEVPVDMLSADHQRLLQEGMPVAVEKYQGRPLFARIPKDVTVQVTDTKTHVKGVSVNAGFKPATVTGGAMVKVPPYIAAGDNIVINTTDMSFVRRTSE 165
            MKHVKPGKGGAFNQIELKELMGGTKKTERFRSSETVELAHIDKEEQLDFLYRDGGLLALMNPQTFEQIEVPVDMLSADHQRLLQEGMPVAVEKYQGRPLFARIPKDVTVQVTDTKTHVKGVSVNAGFKPATVTGGAMVKVPPYIAAGDNIVINTTDMSFVRRTSE
Sbjct:    1 MKHVKPGKGGAFNQIELKELMGGTKKTERFRSSETVELAHIDKEEQLDFLYRDGGLLALMNPQTFEQIEVPVDMLSADHQRLLQEGMPVAVEKYQGRPLFARIPKDVTVQVTDTKTHVKGVSVNAGFKPATVTGGAMVKVPPYIAAGDNIVINTTDMSFVRRTSE 165          
BLAST of jgi.p|Trimin1|353324 vs. uniprot
Match: A0A397PCL7_9HYPH (Elongation factor P n=1 Tax=Dichotomicrobium thermohalophilum TaxID=933063 RepID=A0A397PCL7_9HYPH)

HSP 1 Score: 160 bits (404), Expect = 6.480e-47
Identity = 75/162 (46.30%), Postives = 115/162 (70.99%), Query Frame = 0
Query:    1 MKHVKPGKGGAFNQIELKELMGGTKKTERFRSSETVELAHIDKEEQLDFLYRDGGLLALMNPQTFEQIEVPVDMLSADHQRLLQEGMPVAVEKYQGRPLFARIPKDVTVQVTDTKTHVKGVSVNAGFKPATVTGGAMVKVPPYIAAGDNIVINTTDMSFVRR 162
            ++HVKPGKG A+ Q+ELK L+ GTK  ERFRSSETVE   +++ +   +LY +G +L  M+ +TFEQIE+P D +  + +  LQEGM V VE ++GRP+   +P  VTV+V + +  VKG + ++ +KPA +  G  V VPP++++G+ IV++T+D+S+VRR
Sbjct:   26 IQHVKPGKGPAYAQVELKNLLDGTKLNERFRSSETVERVRLEQRD-FQYLYEEGDMLVFMDMETFEQIEIPADFVG-ERKAFLQEGMQVTVEMHEGRPIGVTLPDQVTVEVAEAEPVVKGQTASSSYKPAVLENGVRVMVPPFVSSGEKIVVDTSDLSYVRR 185          
BLAST of jgi.p|Trimin1|353324 vs. uniprot
Match: UPI000571E206 (elongation factor P n=1 Tax=Thermopetrobacter sp. TC1 TaxID=1495045 RepID=UPI000571E206)

HSP 1 Score: 157 bits (396), Expect = 1.090e-45
Identity = 73/165 (44.24%), Postives = 116/165 (70.30%), Query Frame = 0
Query:    1 MKHVKPGKGGAFNQIELKELMGGTKKTERFRSSETVELAHIDKEEQLDFLYRDGGLLALMNPQTFEQIEVPVDMLSADHQRLLQEGMPVAVEKYQGRPLFARIPKDVTVQVTDTKTHVKGVSVNAGFKPATVTGGAMVKVPPYIAAGDNIVINTTDMSFVRRTSE 165
            ++HVKPGKGGA+ Q+E+K ++G TK  ERFRSSETVE   +++++   +LY  G +L  M+ +T+EQIE+P + L  D    LQ+GM V VE ++G+PL  ++P  VT++V + +  VKG +  + +KPA +  G  + VPP+I+AG+ IV+NT D+++V+R S+
Sbjct:   26 VEHVKPGKGGAYAQVEMKSVVGNTKLNERFRSSETVERVRLEQKDY-QYLYEQGDMLVFMDMETYEQIELPKEFLG-DRAAFLQDGMTVTVESHEGKPLGVQLPLHVTLEVVEAEPVVKGQTAASSYKPAVLENGVRIMVPPFISAGEKIVVNTQDLTYVKRASD 188          
BLAST of jgi.p|Trimin1|353324 vs. uniprot
Match: UPI0012BC6377 (elongation factor P n=1 Tax=Curvivirga aplysinae TaxID=2529852 RepID=UPI0012BC6377)

HSP 1 Score: 156 bits (395), Expect = 1.590e-45
Identity = 76/164 (46.34%), Postives = 107/164 (65.24%), Query Frame = 0
Query:    2 KHVKPGKGGAFNQIELKELMGGTKKTERFRSSETVELAHIDKEEQLDFLYRDGGLLALMNPQTFEQIEVPVDMLSADHQRLLQEGMPVAVEKYQGRPLFARIPKDVTVQVTDTKTHVKGVSVNAGFKPATVTGGAMVKVPPYIAAGDNIVINTTDMSFVRRTSE 165
            +HVKPGKGGAF Q+ELKE+  GTK  ERFRSSETVE   ++++E   FL+ DG     M+ +TF+QI +  DM+  D  + LQ+GM V +E ++  P+   +P+ VTV+V +    VKG + ++ +KPA V GG  V VPPY+  G  IV+NT D +FV R  +
Sbjct:   27 QHVKPGKGGAFLQVELKEIRTGTKLNERFRSSETVERVRLEQKE-FQFLFADGSDFTFMDQETFDQITLNEDMIGEDQAKFLQDGMVVVIESFEESPIGVELPQHVTVEVLEADAVVKGQTASSSYKPAVVEGGVRVMVPPYVETGIRIVVNTDDATFVERAKD 189          
BLAST of jgi.p|Trimin1|353324 vs. uniprot
Match: A0A4D9CYV6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYV6_9STRA)

HSP 1 Score: 155 bits (391), Expect = 3.290e-45
Identity = 73/159 (45.91%), Postives = 106/159 (66.67%), Query Frame = 0
Query:    4 VKPGKGGAFNQIELKELMGGTKKTERFRSSETVELAHIDKEEQLDFLYRDGGLLALMNPQTFEQIEVPVDMLSADHQRLLQEGMPVAVEKYQGRPLFARIPKDVTVQVTDTKTHVKGVSVNAGFKPATVTGGAMVKVPPYIAAGDNIVINTTDMSFVRR 162
            VKPGKGGAFNQ+EL+++  G K  ER R+SE VE   +D EE  D+LY +G  L LMN Q F QIEV  ++LS   Q+ LQEG+ + V+ ++G PL  R+P+ + V+V  T+   KG   +  FKPAT++ G ++KVPP++  G+ ++INT +M +  R
Sbjct:    8 VKPGKGGAFNQVELRDIRTGLKYHERLRASEDVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSR 166          
BLAST of jgi.p|Trimin1|353324 vs. uniprot
Match: A0A351T8Q4_9PROT (Elongation factor P n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T8Q4_9PROT)

HSP 1 Score: 155 bits (392), Expect = 4.250e-45
Identity = 74/160 (46.25%), Postives = 112/160 (70.00%), Query Frame = 0
Query:    3 HVKPGKGGAFNQIELKELMGGTKKTERFRSSETVELAHIDKEEQLDFLYRDGGLLALMNPQTFEQIEVPVDMLSADHQRLLQEGMPVAVEKYQGRPLFARIPKDVTVQVTDTKTHVKGVSVNAGFKPATVTGGAMVKVPPYIAAGDNIVINTTDMSFVRR 162
            HVKPGKGGAF Q+EL+ L+ GTK  ERFR+SE+VE   +D+++   FLY DG  L  M+ ++FEQI++  D+L  +    LQ+GM V VE Y+GRPL  ++P+ VT+++T+T+  VKG +  A +KPA +  G  V VPP+   GD I+++T ++++V+R
Sbjct:   28 HVKPGKGGAFAQVELRNLLDGTKLNERFRASESVERVRLDQKDY-QFLYADGDKLTFMDQESFEQIDIDQDLLG-ERVAFLQDGMEVTVESYEGRPLGVQLPQHVTLEITETEPTVKGQTAAASYKPAMLDNGLRVMVPPFCGVGDKIIVDTEEVTYVKR 185          
BLAST of jgi.p|Trimin1|353324 vs. uniprot
Match: A0A3D9HJT7_9PROT (Elongation factor P n=1 Tax=Aestuariispira insulae TaxID=1461337 RepID=A0A3D9HJT7_9PROT)

HSP 1 Score: 154 bits (390), Expect = 9.070e-45
Identity = 73/164 (44.51%), Postives = 108/164 (65.85%), Query Frame = 0
Query:    2 KHVKPGKGGAFNQIELKELMGGTKKTERFRSSETVELAHIDKEEQLDFLYRDGGLLALMNPQTFEQIEVPVDMLSADHQRLLQEGMPVAVEKYQGRPLFARIPKDVTVQVTDTKTHVKGVSVNAGFKPATVTGGAMVKVPPYIAAGDNIVINTTDMSFVRRTSE 165
            +HVKPGKGGAF Q+ELK++  GTK  ERFRSSETVE   +D++E   FL+ +G     M+ +++EQI V +D++  D    LQ+GM V +E ++  P+   +P  VT+++T+    VKG + ++ +KPA +  GA V VPPYI +G  IV+NT D +FV R  +
Sbjct:   27 QHVKPGKGGAFLQVELKDIRSGTKLNERFRSSETVERVRLDQKE-FQFLFNEGDEYTFMDQESYEQIAVNIDLIGEDQAIFLQDGMVVTIESFEDSPISVMLPDTVTMEITEADAVVKGQTASSSYKPAILENGARVMVPPYIESGTRIVVNTADSTFVERAKD 189          
BLAST of jgi.p|Trimin1|353324 vs. uniprot
Match: W7TRC5_9STRA (Translation elongation factor p n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRC5_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.150e-44
Identity = 73/159 (45.91%), Postives = 107/159 (67.30%), Query Frame = 0
Query:    4 VKPGKGGAFNQIELKELMGGTKKTERFRSSETVELAHIDKEEQLDFLYRDGGLLALMNPQTFEQIEVPVDMLSADHQRLLQEGMPVAVEKYQGRPLFARIPKDVTVQVTDTKTHVKGVSVNAGFKPATVTGGAMVKVPPYIAAGDNIVINTTDMSFVRR 162
            VKPGKGGAFNQ+EL+++  G K  ER R+SE+VE   +D EE  D+LY +G  L LMN Q F QIEV  ++LS   Q+ LQEG+ + V+ ++G PL  R+P+ + V+V  T+   KG   +  FKPAT++ G ++KVPP++  G+ ++INT +M +  R
Sbjct:   74 VKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSR 232          
BLAST of jgi.p|Trimin1|353324 vs. uniprot
Match: A0A7C5SDF3_9PROT (Elongation factor P n=1 Tax=Thermopetrobacter sp. TaxID=2268141 RepID=A0A7C5SDF3_9PROT)

HSP 1 Score: 154 bits (389), Expect = 1.250e-44
Identity = 75/162 (46.30%), Postives = 112/162 (69.14%), Query Frame = 0
Query:    1 MKHVKPGKGGAFNQIELKELMGGTKKTERFRSSETVELAHIDKEEQLDFLYRDGGLLALMNPQTFEQIEVPVDMLSADHQRLLQEGMPVAVEKYQGRPLFARIPKDVTVQVTDTKTHVKGVSVNAGFKPATVTGGAMVKVPPYIAAGDNIVINTTDMSFVRR 162
            ++HVKPGKGGAF Q+E+K ++G TK  ERFR+SE+VE   +++ +   FLY  G  L  M+  T++QIE+P D L  D    LQ+GM V +E ++G+PL  ++P  VT++VT+ +  VKG +  + +KPA +  G  V VPP+IAAG+ IV+NT D+S+V+R
Sbjct:   26 VEHVKPGKGGAFAQVEMKAVVGNTKLNERFRASESVERVRLEQRD-FQFLYEQGDQLVFMDMDTYDQIELPRDFLG-DRAAFLQDGMTVVLELHEGKPLGVQLPLHVTLEVTEAEPVVKGQTAASSYKPAVLENGVRVMVPPFIAAGEKIVVNTEDLSYVKR 185          
BLAST of jgi.p|Trimin1|353324 vs. uniprot
Match: A0A3C0TYN6_9PROT (Elongation factor P n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TYN6_9PROT)

HSP 1 Score: 154 bits (388), Expect = 1.720e-44
Identity = 72/160 (45.00%), Postives = 110/160 (68.75%), Query Frame = 0
Query:    3 HVKPGKGGAFNQIELKELMGGTKKTERFRSSETVELAHIDKEEQLDFLYRDGGLLALMNPQTFEQIEVPVDMLSADHQRLLQEGMPVAVEKYQGRPLFARIPKDVTVQVTDTKTHVKGVSVNAGFKPATVTGGAMVKVPPYIAAGDNIVINTTDMSFVRR 162
            HVKPGKGGAF Q+ELK L+ GTK  ERFRSSETVE   +D+++   FLY +G  L  M+ +TF+QI++  D L  +    LQ+GM V VE ++GRP+  ++P+ VT+++ +T+  VKG +  + +KPA ++ G    VPP+   GD I+++T ++++VRR
Sbjct:   28 HVKPGKGGAFAQVELKNLIDGTKLNERFRSSETVERVRLDQKDY-QFLYAEGDSLTFMDQETFDQIQIETDFLG-ERAAFLQDGMQVMVESFEGRPIGVKLPQQVTLEIAETEPTVKGQTAASSYKPAVLSNGVRCMVPPFCGTGDRIIVDTEEVTYVRR 185          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353324 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CKM1_9STRA4.830e-114100.00Elongation factor P (Fragment) n=1 Tax=Tribonema m... [more]
A0A397PCL7_9HYPH6.480e-4746.30Elongation factor P n=1 Tax=Dichotomicrobium therm... [more]
UPI000571E2061.090e-4544.24elongation factor P n=1 Tax=Thermopetrobacter sp. ... [more]
UPI0012BC63771.590e-4546.34elongation factor P n=1 Tax=Curvivirga aplysinae T... [more]
A0A4D9CYV6_9STRA3.290e-4545.91Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A351T8Q4_9PROT4.250e-4546.25Elongation factor P n=1 Tax=Alphaproteobacteria ba... [more]
A0A3D9HJT7_9PROT9.070e-4544.51Elongation factor P n=1 Tax=Aestuariispira insulae... [more]
W7TRC5_9STRA1.150e-4445.91Translation elongation factor p n=2 Tax=Nannochlor... [more]
A0A7C5SDF3_9PROT1.250e-4446.30Elongation factor P n=1 Tax=Thermopetrobacter sp. ... [more]
A0A3C0TYN6_9PROT1.720e-4445.00Elongation factor P n=1 Tax=Alphaproteobacteria ba... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015365Elongation factor P, C-terminalSMARTSM00841Elong_fact_P_C_2coord: 107..162
e-value: 1.3E-16
score: 71.2
IPR015365Elongation factor P, C-terminalPFAMPF09285Elong-fact-P_Ccoord: 107..162
e-value: 7.9E-16
score: 57.6
IPR001059Translation elongation factor P/YeiP, centralSMARTSM01185EFP_2coord: 44..99
e-value: 2.0E-12
score: 57.2
IPR001059Translation elongation factor P/YeiP, centralPFAMPF01132EFPcoord: 47..99
e-value: 3.2E-13
score: 49.4
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 1..39
e-value: 9.2E-10
score: 40.2
IPR020599Translation elongation factor P/YeiPPIRSFPIRSF005901EF-Pcoord: 1..164
e-value: 2.3E-45
score: 152.4
IPR020599Translation elongation factor P/YeiPPANTHERPTHR30053ELONGATION FACTOR Pcoord: 2..162
IPR013185Translation elongation factor, KOW-likePFAMPF08207EFP_Ncoord: 2..36
e-value: 1.9E-9
score: 37.4
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 107..163
e-value: 2.8E-16
score: 61.0
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 40..104
e-value: 2.1E-14
score: 55.3
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 45..104
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 107..162
IPR013852Translation elongation factor P/YeiP, conserved sitePROSITEPS01275EFPcoord: 128..147
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 2..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_156contigContig_156:282331..287294 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353324mRNA_14826Tribonema minus UTEX_B_3156 mRNAContig_156 282180..287294 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353324|estExt_Genemark1.C_Ctg_1560035 ID=Trimin1|353324|estExt_Genemark1.C_Ctg_1560035|Name=jgi.p|Trimin1|353324|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=165bp
MKHVKPGKGGAFNQIELKELMGGTKKTERFRSSETVELAHIDKEEQLDFL
YRDGGLLALMNPQTFEQIEVPVDMLSADHQRLLQEGMPVAVEKYQGRPLF
ARIPKDVTVQVTDTKTHVKGVSVNAGFKPATVTGGAMVKVPPYIAAGDNI
VINTTDMSFVRRTSE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015365Elong-fact-P_C
IPR001059Transl_elong_P/YeiP_cen
IPR014722Rib_L2_dom2
IPR020599Transl_elong_fac_P/YeiP
IPR013185Transl_elong_KOW-like
IPR012340NA-bd_OB-fold
IPR013852Transl_elong_P/YeiP_CS
IPR008991Translation_prot_SH3-like_sf