Trimin1|353236|estExt_Genemark1.C_Ctg_1510044 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353236
Unique NameTrimin1|353236|estExt_Genemark1.C_Ctg_1510044
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length301
Homology
BLAST of jgi.p|Trimin1|353236 vs. uniprot
Match: A0A835ZAR5_9STRA (Ribonuclease H-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAR5_9STRA)

HSP 1 Score: 613 bits (1580), Expect = 7.190e-222
Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 0
Query:    1 MEWQPEASGMPQGLGHYDQHGASDYQHTHQEGGGFVQHSQWQYHTPDQETATAMPYVLDIPSDKVTMVDTPAALQWAGSVLRDSSIIALDTETQPNFTPRSPPHRTALLQIASRAADGTEAVFLIDLLALLPLCAEAMDSALYHCFRSEDILKVGHGLVQDVRELYMFYPQVAAFRRMNGVLEANAMHKQLDPEVVNMLSLKKLVLHYLNCSLSKGQQMSNWANRPLSSSQIHYAACDALVLLRLHDSMVLEIFEECPDFNIDDLLQDIDGPNPNAVECWQCGLILASAKAFKKVRCHHAF 301
            MEWQPEASGMPQGLGHYDQHGASDYQHTHQEGGGFVQHSQWQYHTPDQETATAMPYVLDIPSDKVTMVDTPAALQWAGSVLRDSSIIALDTETQPNFTPRSPPHRTALLQIASRAADGTEAVFLIDLLALLPLCAEAMDSALYHCFRSEDILKVGHGLVQDVRELYMFYPQVAAFRRMNGVLEANAMHKQLDPEVVNMLSLKKLVLHYLNCSLSKGQQMSNWANRPLSSSQIHYAACDALVLLRLHDSMVLEIFEECPDFNIDDLLQDIDGPNPNAVECWQCGLILASAKAFKKVRCHHAF
Sbjct:    1 MEWQPEASGMPQGLGHYDQHGASDYQHTHQEGGGFVQHSQWQYHTPDQETATAMPYVLDIPSDKVTMVDTPAALQWAGSVLRDSSIIALDTETQPNFTPRSPPHRTALLQIASRAADGTEAVFLIDLLALLPLCAEAMDSALYHCFRSEDILKVGHGLVQDVRELYMFYPQVAAFRRMNGVLEANAMHKQLDPEVVNMLSLKKLVLHYLNCSLSKGQQMSNWANRPLSSSQIHYAACDALVLLRLHDSMVLEIFEECPDFNIDDLLQDIDGPNPNAVECWQCGLILASAKAFKKVRCHHAF 301          
BLAST of jgi.p|Trimin1|353236 vs. uniprot
Match: A0A482SJB0_9ARCH (3'-5' exonuclease domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJB0_9ARCH)

HSP 1 Score: 157 bits (397), Expect = 1.310e-42
Identity = 89/235 (37.87%), Postives = 136/235 (57.87%), Query Frame = 0
Query:   47 DQETATAMPYVLDIPSDKVTMVDTPAALQWAGSVLRDSSIIALDTETQPNFTPRSP------PHRTALLQIASRAADGTEAVFLIDLLALLPL-CAEAMDSALYHCFRSEDILKVGHGLVQDVRELYMFYPQVAAFRRMNGVLEANAMHKQLDPEVVNMLSLKKLVLHYLNCSLSKGQQMSNWANRPLSSSQIHYAACDALVLLRLHDSMVLEIFEEC----PDFNIDDLLQDID 270
            + E    +P+  D+P   +  V+   +LQ       D  I+ +DTET+P F  R+       P+ T+L+Q+A R++ G E+V ++D+L L        +D  L      +  +KVG  L+ D +EL M Y  + +F++++ +L+   + K L PE++N LSLK LV  YL+  L KGQQMS+W+ RPL  +QI YAACDALVLLRL+D+MV E  E+      +FN+ D L+  D
Sbjct:    5 EDEDDRMLPFTFDLPQSSLHFVNDVESLQRLRIAFADCVIVGIDTETRPMFVKRNRANQFVRPNPTSLVQMALRSSSGLESVHIVDMLTLKTQGLLNELDMVLVTVMCDDHCIKVGQSLINDFKELRMSYAHMQSFQKVHAILDTTVLSKVLQPELINTLSLKTLVKQYLHFQLVKGQQMSDWSRRPLGKAQIQYAACDALVLLRLYDAMVCEAEEKALKQTSEFNVRDHLEVFD 239          
BLAST of jgi.p|Trimin1|353236 vs. uniprot
Match: A0A7S3H5J0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H5J0_9STRA)

HSP 1 Score: 160 bits (405), Expect = 2.500e-42
Identity = 94/208 (45.19%), Postives = 128/208 (61.54%), Query Frame = 0
Query:   56 YVLDIPSDKVTMVDTPAALQWAGSVLRDSSIIALDTETQPNFTPRSP----PHRTALLQIASRAADGTEAVFLIDLL------ALLPLCAEAMDSALYHCFRSEDILKVGHGLVQDVRELYMFYPQVAAFRRMNGVLEANAMHKQLDPEVVNMLSLKKLVLHYLNCSLSKGQQMSNWANRPLSSSQIHYAACDALVLLRLHDSMVLEI 253
            +V D+PS  + MV T   +Q   + L  +++I +DTET+P F P++     P+ TAL+QIA R     E VF++D++       LL L    +D AL          K+G GL  D+REL   YP V AFR  + VLE + + K L P + N +SLK LV  +L+ +LSK QQMSNWA RPL+SSQ+HYAACDALVLLRL+D++  EI
Sbjct:   44 FVFDLPSTSLIMVTTEEDIQRMKTSLMKATLIGIDTETKPTFVPKAQLVGGPNLTALIQIAVRCPKSIEEVFVVDMIHISRNSRLLIL----LDYALQQGLLENQCFKLGQGLTNDLRELAKSYPTVKAFRLTSCVLETHDLIKYLKPVLTNPISLKNLVKEFLHLNLSKSQQMSNWAKRPLTSSQLHYAACDALVLLRLYDAIYCEI 247          
BLAST of jgi.p|Trimin1|353236 vs. uniprot
Match: A0A7S2GX10_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GX10_9STRA)

HSP 1 Score: 150 bits (380), Expect = 2.930e-40
Identity = 101/256 (39.45%), Postives = 140/256 (54.69%), Query Frame = 0
Query:   52 TAMPYVLDIPSDKVTMVDTPAALQWAGSVLRDSSIIALDTETQPNF------------------------TPRSPPHRT-------ALLQIASRAADGTEAVFLIDLLALLPLCAEAMDSALYHCFRSEDILKVGHGLVQDVRELYMFYPQVAAFRRMNGVLEANAMHKQLDPEVVNMLSLKKLVLHYLNCSLSKGQQMSNWANRPLSSSQIHYAACDALVLLRLHDSMVLEIFEECPDFNIDDLLQDIDGPNPNA 276
            T++ +VLDIP D++  V     +  A  +LR ++II +DTETQP F                        T RSP  +        ALLQIA R A G E V L D L LLP     + + L   FRS ++LK+GHGL QD+ EL+  YP +  F+ +  VLE + + K + P    M SL+ +VL +L+ +L+K QQ SNW +RPLS  Q+ YAACDALVLLRL+D++  EI +   +F++  L  D     P A
Sbjct:   18 TSLTFVLDIPDDRLIYVQNGDGIIQAEEILRTATIIGIDTETQPTFYKYGARNARRKSEGSSAGEKGGEKTSRSPGKKQKFPRNPCALLQIAVRDAAGLETVLLFDTLRLLPGFETELSTILGRVFRSHEVLKLGHGLKQDLFELHASYP-LKGFKALENVLEVDDLSKVVWPGD-QMRSLQVMVLRFLDSALNKKQQCSNWGHRPLSLKQMEYAACDALVLLRLYDAIRAEIGDRDANFDLRALRLDFAVREPEA 271          
BLAST of jgi.p|Trimin1|353236 vs. uniprot
Match: A0A2D4BG54_PYTIN (3'-5' exonuclease domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BG54_PYTIN)

HSP 1 Score: 150 bits (379), Expect = 1.260e-39
Identity = 91/241 (37.76%), Postives = 131/241 (54.36%), Query Frame = 0
Query:   56 YVLDIPSDKVTMVDTPAALQWAGSVLRDSSIIALDTETQPNFTPRSPPHRTALLQIASRAADGTEAVFLIDLLALLPLCAEAMDSALYHCFRSEDILKVGHGLVQDVRELYMFYPQVAAFRRMNGVLEANAMHKQLDPEVVNMLSLKKLVLHYLNCSLSKGQQMSNWANRPLSSSQIHYAACDALVLLRLHDSMVLEIFEECPDFNIDDLLQDIDGPNPNAVECWQCGLILASAKAFKKVR 296
            Y ++ P + V  VD    + +     R ++I+ +DTET+P F  +   HR +LLQIA R  D  E VF++DLL L P      +  L   F S+ ++K+G  L+ D++EL   YP  + FR    V+E N M   L       LSL+KLV  YL   L+K QQMSNW  RPL++SQIHYAACDALVL+ L+D ++  +    P FN+D +   +D       +C  C     + +  K+ R
Sbjct:   19 YTIERPEELVKFVDDKETMHYFSERARLATIVGIDTETRPQFRDKHRSHRCSLLQIALRLRDTKEEVFILDLLKLKP---HMYNKTLLGLFLSQSVIKLGQSLLGDLKELASSYPGASCFRVAKAVVEVNDMSISLMG-AHQALSLQKLVFLYLGKRLTKTQQMSNWNRRPLTTSQIHYAACDALVLIHLYDVLLERLKANKPHFNVDSISNVLDVHIDLPPKCQLCFEYFDNKRGLKEHR 255          
BLAST of jgi.p|Trimin1|353236 vs. uniprot
Match: G4ZEW8_PHYSP (3'-5' exonuclease domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZEW8_PHYSP)

HSP 1 Score: 150 bits (378), Expect = 1.020e-38
Identity = 92/241 (38.17%), Postives = 134/241 (55.60%), Query Frame = 0
Query:   56 YVLDIPSDKVTMVDTPAALQWAGSVLRDSSIIALDTETQPNFTPRSPPHRTALLQIASRAADGTEAVFLIDLLALLPLCAEAMDSALYHCFRSEDILKVGHGLVQDVRELYMFYPQVAAFRRMNGVLEANAMHKQLDPEVVNMLSLKKLVLHYLNCSLSKGQQMSNWANRPLSSSQIHYAACDALVLLRLHDSMVLEIFEECPDFNIDDLLQDIDGPNPNAVECWQCGLILASAKAFKKVR 296
            YV+D     +  V +     +    LR + ++ LDTET+P +     P+  ALLQIA R A  TE VF++D   L  L A   +S L   F S+ I+K+G   +QD++EL   YPQ + F    GV+E N +   L     N LSL+KLV  YL+  L+K QQMSNW  RPL++SQ+HYAA DALVL+ L+D +++ I ++   F + ++   +D   P   +C  C  +  +A   KK R
Sbjct:   18 YVIDQARAPIQFVASKKDFSYCAERLRSAQLMGLDTETRPTWGKTRGPNPCALLQIAVRDASHTEEVFILD---LRRLPATVYNSTLTSVFLSKKIIKLGQSFLQDLKELAQSYPQASCFTVCKGVVEVNDLSIALAG-AHNPLSLQKLVFFYLHRKLAKTQQMSNWERRPLTASQLHYAAADALVLIHLYDELLMRISKKQQGFELSEVTNVLDINLPRTPKCSLCFEVFDTAAELKKHR 254          
BLAST of jgi.p|Trimin1|353236 vs. uniprot
Match: W4GPC3_9STRA (3'-5' exonuclease domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GPC3_9STRA)

HSP 1 Score: 150 bits (378), Expect = 2.460e-38
Identity = 90/228 (39.47%), Postives = 125/228 (54.82%), Query Frame = 0
Query:   65 VTMVDTPAALQWAGSVLRDSSIIALDTETQPNFTPRSPPHRTALLQIASRAADGTEAVFLIDLLALLPLCAEAMDSALYHCFRSEDILKVGHGLVQDVRELYMFYPQVAAFRRMNGVLEANAMHKQLDPEVVNMLSLKKLVLHYLNCSLSKGQQMSNWANRPLSSSQIHYAACDALVLLRLHDSMVLEIFEECPDFNIDDLLQDIDGPNPNAVECWQCGLILASAKAF 292
            V  ++ P+ L    + L  + ++ LDTET+P F   S P+ T+LLQ+A R   G E VFL DLLAL P      D  L   F++  ILK+G GL+ D++EL   YP  + F +M GV+E NA+ ++L+     M+SL+KLV + L   L K  Q SNW  RPL+  Q+ YAA DALVL+ + D M   I +  P F    +  D+D   P    C  C  +  S  AF
Sbjct:   57 VQFINKPSQLPSCQARLLAAVVVGLDTETKPEFRKTSTPNATSLLQVAVRDVHGREDVFLFDLLALSP---SHYDHMLADLFQNPAILKLGQGLLNDLKELTGAYPSASCFTKMQGVVEVNALFRELEGPTQPMMSLQKLVYYSLKRKLVKTHQKSNWNRRPLAPGQVTYAALDALVLMWIFDDMCARICQLRPAFTAAGIATDLDVLVPERYVCPTCRSVFKSDHAF 281          
BLAST of jgi.p|Trimin1|353236 vs. uniprot
Match: A0A024TW10_9STRA (3'-5' exonuclease domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TW10_9STRA)

HSP 1 Score: 149 bits (377), Expect = 3.550e-38
Identity = 90/228 (39.47%), Postives = 126/228 (55.26%), Query Frame = 0
Query:   65 VTMVDTPAALQWAGSVLRDSSIIALDTETQPNFTPRSPPHRTALLQIASRAADGTEAVFLIDLLALLPLCAEAMDSALYHCFRSEDILKVGHGLVQDVRELYMFYPQVAAFRRMNGVLEANAMHKQLDPEVVNMLSLKKLVLHYLNCSLSKGQQMSNWANRPLSSSQIHYAACDALVLLRLHDSMVLEIFEECPDFNIDDLLQDIDGPNPNAVECWQCGLILASAKAF 292
            V  + TP+ L      LR + ++ LDTET+P F   + P+ T+LLQ+A R A G E VFL DLLAL P      +  L   F +  ILK+G GL+ D++EL   YP    F +M+GV+E NA+ ++++     M+SL+KLV + L   L K  Q SNW  RPL+  QI YAA DALVL+ + D MV  I ++ P F    +   +D    +   C  C  +  S  AF
Sbjct:   56 VQFLHTPSQLAACHERLRTAVVVGLDTETKPEFKKTAIPNPTSLLQVAVRDAHGAEDVFLFDLLALTP---SHYNDMLAELFLNPSILKLGQGLLNDLKELAHAYPTATCFTKMHGVVEVNALFREIEGPTQPMMSLQKLVYYSLKRKLVKTHQKSNWNRRPLAPGQITYAALDALVLVWIFDDMVARICQKRPTFKAAVIATTLDVHVADNYVCPTCKAVFTSDHAF 280          
BLAST of jgi.p|Trimin1|353236 vs. uniprot
Match: A0A418BAW1_9STRA (T-complex protein 1 subunit gamma n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418BAW1_9STRA)

HSP 1 Score: 149 bits (377), Expect = 8.210e-37
Identity = 90/228 (39.47%), Postives = 126/228 (55.26%), Query Frame = 0
Query:   65 VTMVDTPAALQWAGSVLRDSSIIALDTETQPNFTPRSPPHRTALLQIASRAADGTEAVFLIDLLALLPLCAEAMDSALYHCFRSEDILKVGHGLVQDVRELYMFYPQVAAFRRMNGVLEANAMHKQLDPEVVNMLSLKKLVLHYLNCSLSKGQQMSNWANRPLSSSQIHYAACDALVLLRLHDSMVLEIFEECPDFNIDDLLQDIDGPNPNAVECWQCGLILASAKAF 292
            V  + TP+ L      LR + ++ LDTET+P F   + P+ T+LLQ+A R A G E VFL DLLAL P      +  L   F +  ILK+G GL+ D++EL   YP    F +M+GV+E NA+ ++++     M+SL+KLV + L   L K  Q SNW  RPL+  QI YAA DALVL+ + D MV  I ++ P F    +   +D    +   C  C  +  S  AF
Sbjct:   19 VQFLHTPSQLAACHERLRTAIVVGLDTETKPEFKKTAIPNPTSLLQVAVRDAHGAEDVFLFDLLALTP---SHYNDMLAELFLNPSILKLGQGLLNDLKELAHAYPTATCFTKMHGVVEVNALFREIEGPTQPMMSLQKLVYYSLKRKLVKTHQKSNWNRRPLAPGQITYAALDALVLVWIFDDMVARICQKRPTFKAAVIATTLDVHVADNYVCPTCKAVFTSDHAF 243          
BLAST of jgi.p|Trimin1|353236 vs. uniprot
Match: W2R8I8_PHYPN (3'-5' exonuclease domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2R8I8_PHYPN)

HSP 1 Score: 142 bits (358), Expect = 1.340e-35
Identity = 91/244 (37.30%), Postives = 137/244 (56.15%), Query Frame = 0
Query:   56 YVLDIPSDKVTMVDTPAALQWAGSVLRDSSIIALDTETQPNFTPRSPPHRTALLQIASRAADGTEAVFLIDLLALLPLCAEAMDSALYHCFRSEDILKVGHGLVQDVRELYMFYPQVAAFRRMNGVLEANAMHKQL-DPEVVNMLSLKKLVLHYLNCSLSKGQQMSNWANRPLSSSQIHYAACDALVLLRLHDSMVLEIFEE--CPDFNIDDLLQDIDGPNPNAVECWQCGLILASAKAFKKVR 296
            YV+D     +  V +     +  + L  + +I  DTET+P ++    P+ +ALLQIA R A   E VF++D   LL L A+  ++ L   F S+ I+K+G     D++EL   YPQ + F    GV+E N +   L  P   N LSL+KLV  YL+  L+K QQMSNWA RPL+SSQ+HYAA DALVL+ L+D +++ + ++    +F +  +   +D   P A +C +C  +  +    KK R
Sbjct:   30 YVIDQSRVPIYFVASKKEWSYCATRLLKAEVIGFDTETRPIWSKHQRPNPSALLQIAVRDASHKEEVFILD---LLHLSAKVYNTTLKRVFLSKTIVKLGQSFYHDLQELAQSYPQASCFTVCKGVVEVNDLSISLAGPH--NPLSLQKLVFFYLHRKLTKTQQMSNWARRPLTSSQLHYAAADALVLIHLYDELLMRMQKQRTTKNFQLSIVTNVLDVNLPPAPKCSRCFDVFETRDKLKKHR 268          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353236 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAR5_9STRA7.190e-222100.00Ribonuclease H-like domain-containing protein (Fra... [more]
A0A482SJB0_9ARCH1.310e-4237.873'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A7S3H5J0_9STRA2.500e-4245.19Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2GX10_9STRA2.930e-4039.45Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A2D4BG54_PYTIN1.260e-3937.763'-5' exonuclease domain-containing protein n=1 Ta... [more]
G4ZEW8_PHYSP1.020e-3838.173'-5' exonuclease domain-containing protein n=1 Ta... [more]
W4GPC3_9STRA2.460e-3839.473'-5' exonuclease domain-containing protein n=2 Ta... [more]
A0A024TW10_9STRA3.550e-3839.473'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A418BAW1_9STRA8.210e-3739.47T-complex protein 1 subunit gamma n=1 Tax=Aphanomy... [more]
W2R8I8_PHYPN1.340e-3537.303'-5' exonuclease domain-containing protein n=8 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0025623'-5' exonuclease domainSMARTSM0047435exoneu6coord: 65..254
e-value: 2.5E-10
score: 50.3
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 66..252
e-value: 1.8E-24
score: 86.4
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 4..270
e-value: 3.4E-45
score: 156.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
NoneNo IPR availablePANTHERPTHR13620:SF42EXONUCLEASE MUT-7 HOMOLOGcoord: 71..250
NoneNo IPR availablePANTHERPTHR136203-5 EXONUCLEASEcoord: 71..250
NoneNo IPR availableCDDcd06141WRN_exocoord: 68..246
e-value: 8.98757E-31
score: 111.901
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 38..257

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_151contigContig_151:351282..358029 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353236mRNA_15185Tribonema minus UTEX_B_3156 mRNAContig_151 351272..358030 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353236|estExt_Genemark1.C_Ctg_1510044 ID=Trimin1|353236|estExt_Genemark1.C_Ctg_1510044|Name=jgi.p|Trimin1|353236|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=301bp
MEWQPEASGMPQGLGHYDQHGASDYQHTHQEGGGFVQHSQWQYHTPDQET
ATAMPYVLDIPSDKVTMVDTPAALQWAGSVLRDSSIIALDTETQPNFTPR
SPPHRTALLQIASRAADGTEAVFLIDLLALLPLCAEAMDSALYHCFRSED
ILKVGHGLVQDVRELYMFYPQVAAFRRMNGVLEANAMHKQLDPEVVNMLS
LKKLVLHYLNCSLSKGQQMSNWANRPLSSSQIHYAACDALVLLRLHDSMV
LEIFEECPDFNIDDLLQDIDGPNPNAVECWQCGLILASAKAFKKVRCHHA
F
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0025623'-5'_exonuclease_dom
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf