mRNA_3892 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161047
Unique NamemRNA_3892
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|161047 vs. uniprot
Match: A0A836CKV9_9STRA (Ion transport protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKV9_9STRA)

HSP 1 Score: 539 bits (1388), Expect = 3.450e-193
Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 1
Query:    1 LNSPALFDTASMAAAVEVHWQLYGRSGHIRSLGLYILLISDFVVCTIWFHALSFGTLAERITAWALQAIKLVLALWFLRKELRQLQSQGGPLKEQIQEYFTDPWNLLDLSAYALLFIGVAAQVSTRKSLLADCTNSIVALLLWFKLLYFMRPFRSTGPLINTIFEIMADMRTFLVILLVVVVGFANAFYAILGRALTEQECDEKSTSTARASCYEKLAAGPSPSFSSPWKAVRSSLSYMLGGYDLDELDAGSAPVLLSLLWLACMLLVTIILLNVLIAIISER 849
            LNSPALFDTASMAAAVEVHWQLYGRSGHIRSLGLYILLISDFVVCTIWFHALSFGTLAERITAWALQAIKLVLALWFLRKELRQLQSQGGPLKEQIQEYFTDPWNLLDLSAYALLFIGVAAQVSTRKSLLADCTNSIVALLLWFKLLYFMRPFRSTGPLINTIFEIMADMRTFLVILLVVVVGFANAFYAILGRALTEQECDEKSTSTARASCYEKLAAGPSPSFSSPWKAVRSSLSYMLGGYDLDELDAGSAPVLLSLLWLACMLLVTIILLNVLIAIISER
Sbjct:    1 LNSPALFDTASMAAAVEVHWQLYGRSGHIRSLGLYILLISDFVVCTIWFHALSFGTLAERITAWALQAIKLVLALWFLRKELRQLQSQGGPLKEQIQEYFTDPWNLLDLSAYALLFIGVAAQVSTRKSLLADCTNSIVALLLWFKLLYFMRPFRSTGPLINTIFEIMADMRTFLVILLVVVVGFANAFYAILGRALTEQECDEKSTSTARASCYEKLAAGPSPSFSSPWKAVRSSLSYMLGGYDLDELDAGSAPVLLSLLWLACMLLVTIILLNVLIAIISER 283          
BLAST of jgi.p|Trimin1|161047 vs. uniprot
Match: A0A836CMZ4_9STRA (Ion_trans domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMZ4_9STRA)

HSP 1 Score: 105 bits (262), Expect = 4.870e-22
Identity = 88/298 (29.53%), Postives = 135/298 (45.30%), Query Frame = 1
Query:    1 LNSPALFDTASMAAAVEVHWQLYGRSGHI-RSLGLYILLISDFVVCTIWFHALSFGTLAERITAWALQAIKLVLALWFLRKELRQLQSQGGPLKEQIQEYFTDPWNLLDLSAYALLFIGVAAQVSTRKSLLADCTNSIVAL-------------LLWFKLLYFMRPFRSTGPLINTIFEIMADMRTFLVILLVVVVGFANAFYAILGRALTEQECDEKSTSTARASCYEKLAAGPSP---SFSSPWKAVRSSLSYMLGGYDLDELDAGSAPVLLSLLWLACMLLVTIILLNVLIAIIS 843
            L    LF T  +AA V+ +W        + R   L++ L+  FV+ + WF             +W  +  KL   +  +  E    ++     +  I +Y  D WNL+D   Y L+  G+A + +      A+  +S  AL             LLWFK++YF+                    R  L+ILLVV++GFANAFY IL             T  A     ++L  G  P   SFS+ W++VRS ++Y+ G +DL+ELD G  P LLS LW   M+L  ++LL ++I ++ 
Sbjct:  129 LGHSDLFGTPVVAALVQAYWHKSRSEMRLMRQCVLHLGLLVSFVLASRWF-------------SWVFEVAKLAFLVPLILHERLSFRAN----EHSIGKYLEDSWNLVDPIMYLLVIAGIAMRAAVHILSSANGADSAAALXXXXXXXXXXXXXLLWFKIIYFL--------------------RLILLILLVVLLGFANAFYVILKHPDHPPSACAAETDAA----LKQLCEGAEPPPGSFSTMWRSVRSVMAYVFGDFDLNELDEGPTPALLSCLWFLLMVLAPVLLLKIIITLLG 385          
BLAST of jgi.p|Trimin1|161047 vs. uniprot
Match: A0A835YQC1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQC1_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.660e-16
Identity = 51/114 (44.74%), Postives = 79/114 (69.30%), Query Frame = 1
Query:  508 MRTFLVILLVVVVGFANAFYAILGRALTEQECDEKSTSTARASCYEKLAAGPSP--SFSSPWKAVRSSLSYMLGGYDLDELDAGSAPVLLSLLWLACMLLVTIILLNVLIAIIS 843
            +R FLVILL+ ++GFANAFYAILG+    +       ST +    ++L     P  SF++PW+A+R++L+Y+ G +DL  LD G  PVLLSLLW A M+++ ++LLN++IA+++
Sbjct:   13 LRLFLVILLLALLGFANAFYAILGK----EGSGAVDCSTVQDGDLQELCQANEPPGSFATPWRAIRTTLAYVFGDFDLAALDDGPTPVLLSLLWCALMVVLPVLLLNLIIAVLN 122          
BLAST of jgi.p|Trimin1|161047 vs. uniprot
Match: A0A077ZT76_STYLE (Wd-40 repeat protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A077ZT76_STYLE)

HSP 1 Score: 85.1 bits (209), Expect = 7.840e-15
Identity = 71/217 (32.72%), Postives = 112/217 (51.61%), Query Frame = 1
Query:  214 VLALWFLRKELRQLQSQGGPLKEQIQEYFTDPWNLLDLSAYALLFIGVAAQVSTRKSL-----LADCTNSIVALLLWFKLLYFMRPFRSTGPLINTIFEIMADMRTFLVILLVVVVGFANAFYAILGRALTEQECDEKSTSTARASCYEKLAAGPSPSFSSPWKAVRSSLSYMLGGYDLDELDAGSAPVLLSL-LWLACMLLVTIILLNVLIAIISE 846
            + A +FL  EL+QLQS          +YFTD WN +D+     +++ V + V     +     L     SIV   +WFK LYF+R ++ TG LI  IFE+++DMR F ++LL+ +V F ++F  I   A   Q+ +++ T+            G   S    +K +       LG ++ D+   G   V L++ L+L C +   I++LN+LIAIISE
Sbjct:  576 LFASYFLLNELKQLQSGS--------DYFTDLWNYIDIIPPIGIYVFVVSAVLNDYGIQYGEDLERSIQSIVTFFMWFKFLYFLRIYKRTGYLIRMIFEVISDMRYFFIVLLITIVAFGDSFLKI---ANANQDTEKRFTT------------GFIDSIIFTYKMI-------LGDFETDKF--GDVAVSLAMTLFLLCTIFNMIVMLNLLIAIISE 760          
BLAST of jgi.p|Trimin1|161047 vs. uniprot
Match: J9J443_9SPIT (WD-40 repeat protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9J443_9SPIT)

HSP 1 Score: 84.3 bits (207), Expect = 1.550e-14
Identity = 70/212 (33.02%), Postives = 107/212 (50.47%), Query Frame = 1
Query:  211 LVLALWFLRKELRQLQSQGGPLKEQIQEYFTDPWNLLDLSAYALLFIGVAAQVSTRKSLLADCTNSIVALLLWFKLLYFMRPFRSTGPLINTIFEIMADMRTFLVILLVVVVGFANAFYAILGRALTEQECDEKSTSTARASCYEKLAAGPSPSFSSPWKAVRSSLSYMLGGYDLDELDAGSAPVLLSLLWLACMLLVTIILLNVLIAIISE 846
            L+++ +FL  E++QL SQG        EY    WN  DL    ++ + V       K       +S+ +L +WFK LYF+R F+ TG LI  I E++ DM+ F V+L+VV+  F +AF +     L+    DE S   A A+ +                A+  S    LG + LDE D  +  +   +++L   +LV I++LN+LIAIISE
Sbjct: 1356 LLVSTYFLVTEVKQLFSQGI-------EYLFSIWNYFDLIPPIIIPLIVLQDFLRIKYDFQHSLHSVASLFMWFKFLYFLRIFKETGYLIRMIVEVVKDMKVFFVVLIVVLAAFGDAFLS-----LSNSSADE-SARFAGANFFT---------------ALLYSYRTSLGDFQLDEYDNNAQSLTTWIMFLFASILVLIVMLNLLIAIISE 1539          
BLAST of jgi.p|Trimin1|161047 vs. uniprot
Match: A0A078AS47_STYLE (Wd-40 repeat protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AS47_STYLE)

HSP 1 Score: 82.8 bits (203), Expect = 4.180e-14
Identity = 69/227 (30.40%), Postives = 112/227 (49.34%), Query Frame = 1
Query:  196 LQAIKLVLALWFLRKELRQLQSQGGPLKEQIQEYFTDPWNLLD----LSAYALLFIGVAAQV------STRKSLLADCTNSIVALLLWFKLLYFMRPFRSTGPLINTIFEIMADMRTFLVILLVVVVGFANAFYAILGRALTEQECDEKSTSTARASCYEKLAAGPSPSFSSPWKAVRSSLSYMLGGYDLDELDAGSAPVLLSLLWLACMLLVTIILLNVLIAIISE 846
            L A+ L+ A++F+  E+RQ   QG        +YF   WN +D    L  +A   I V ++       +T++S+      +I    +WFK LYF+R FRST  LI  IFE++ DMR F  +LL+ ++ F ++F +I   +    E D  + S   +  Y                    +   +LG ++ D+    + P L+ +L+L C +   I++LN+LIAIISE
Sbjct:  399 LLAVNLIFAVYFIHNEIRQFCLQGT-------KYFQSYWNYIDMIPPLGIFAFTIITVLSEYDYEIDEATKRSI-----QAITTFFMWFKFLYFLRIFRSTSYLITMIFEVIYDMRFFFAVLLITMIAFGDSFLSI---SYGNNELDRFTHSFTDSIIY--------------------TYRMILGDFETDKFGEVAKP-LVIILFLLCTIFNMIVMLNLLIAIISE 589          
BLAST of jgi.p|Trimin1|161047 vs. uniprot
Match: J9INY9_9SPIT (Ion_trans domain-containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9INY9_9SPIT)

HSP 1 Score: 82.8 bits (203), Expect = 5.260e-14
Identity = 70/219 (31.96%), Postives = 109/219 (49.77%), Query Frame = 1
Query:  199 QAIKLVLALWFLRKELRQLQSQGGPLKEQIQEYFTDPWNLLDLSAYALLFIGVAAQVSTRKSLLADCTNSIVALLLWFKLLYFMRPFRSTGPLINTIFEIMADMRTFLVILLVVVVGFANAFYAILGRALTEQECDEKSTSTARASCYEKLAAGP--SPSFSSPWKAVRSSLSYMLGGYDLDELDAGSAPVLLSLL-WLACMLLVTIILLNVLIAIISE 846
            + + ++L L+F   ELRQ+  QG      + +Y   PWN LD+    L+ I ++ +     +      N++    +W K LYF R FR T   I+ I  I++D+R F+V+ LV +  F N+ Y +        ECD    +   A   E+  AG        S + A R SL       D D  D GS  V+L+LL ++   L +TI++LN+LIA+IS+
Sbjct: 1574 KVLVIILTLYFFALELRQMFLQG------MGKYLGSPWNYLDIIPLVLISISMSFENLGIPANYERPCNAVACFFMWIKFLYFWRIFRQTSKFISMIVAIISDLRVFMVVFLVTLTAFGNSMYIMSNN---NPECD----AACEALPEEERPAGRFIGSLADSVFFAYRMSLG------DFDTTDLGSVYVVLALLTFVVATLFLTIMMLNILIAVISD 1773          
BLAST of jgi.p|Trimin1|161047 vs. uniprot
Match: A0A078A129_STYLE (Wd-40 repeat protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078A129_STYLE)

HSP 1 Score: 82.4 bits (202), Expect = 6.930e-14
Identity = 81/293 (27.65%), Postives = 134/293 (45.73%), Query Frame = 1
Query:    4 NSPALFDTASMAAAVEVHWQLYGRSGHIRSLGLYILL--ISDFVVCTIWFHALSFGTLAERITAW----ALQAIKLVLALWFLRKELRQLQSQGGPLKEQIQEYFTDPWNLLDLSAYALLFIGVAAQVSTRKSLLADCTN------SIVALLLWFKLLYFMRPFRSTGPLINTIFEIMADMRTFLVILLVVVVGFANAFYAILGRALTEQECDEKSTSTARASCYEKLAAGPSPSFSSPWKAVRSSLSYMLGGYDLDELDAGSAPVLLSLLWLACMLLVTIILLNVLIAIISE 846
            N   LF   S+ + ++  W L  R   I+ L +  +   ++  +   ++     FG      + W     L A+  + +++FL  E+RQ    G        +Y +  WN  D+    L+ + V+ +++T  +   +  N      S+  LL+W KLLYF+R FRSTG L+ T+ +++ DM+ FL+IL +V  GF  AF       L+E+   E       A C+                A R S+    G    D  D    PV L ++W+   +L  I++LN+LI+IISE
Sbjct: 1268 NDIELFSYRSIQSVIDYKWPL-AREYTIKVLFIPFIFYQLTFLIYSNVFCGQFQFGEDKYSDSWWIGHNVLAALLYLFSIYFLSNEIRQFYVTGI-------DYLSSVWNYSDILPPILIIVVVSLKLNTYYNEDYEPNNFIYTVHSVATLLMWIKLLYFLRIFRSTGYLVRTLTDVIYDMKVFLLILFIVYFGFGEAFLR-----LSEKSDPEMQFIQNYAYCWVY--------------AFRLSI----GDNATDTFDDTIQPVTLWIIWVIAGILTNIVMLNLLISIISE 1529          
BLAST of jgi.p|Trimin1|161047 vs. uniprot
Match: J9F7S2_9SPIT (WD-40 repeat protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9F7S2_9SPIT)

HSP 1 Score: 82.4 bits (202), Expect = 6.950e-14
Identity = 83/283 (29.33%), Postives = 135/283 (47.70%), Query Frame = 1
Query:   16 LFDTASMAAAVEVHWQLYGRSGHIRSLGL-YILLISDFVVCTIWFHALSFGTLAERITAWALQAIKLVLALWFLRKELRQLQSQGGPLKEQIQEYFTDPWNLLDLSAYALL--FIGVAAQV---STRKSLLADCTNSIVALLLWFKLLYFMRPFRSTGPLINTIFEIMADMRTFLVILLVVVVGFANAFYAILGRALTEQECDEKSTSTARASCYEKLAAGPSPSFSSPWKAVRSSLSYMLGGYDLDELDAGSAPVLLSLLWLACMLLVTIILLNVLIAIISE 846
            LF++ ++  A+E  W L  R   I+ L + +IL +S ++V   +   +   +    +  +      L  +L+F+  E+ QL+ +G        EY    WN LDL    LL  FI +AA     +     L  C  + ++L+LW K LYF+R F+STG LI  I E+  DMR FL+IL++  V F +A  +I      E   DE   ++     Y +              +V  +   +LG +D       + P +  +L++ C +   II+LN+L+AIISE
Sbjct: 1279 LFNSKAIRKAIEYKWPLT-REYTIKKLFIPFILFLSFYLVYMNYIFYMRETSDDWMLINYGFMVPLLFFSLYFVHNEITQLKHEG-------LEYLKSVWNYLDLIPPFLLMAFIPLAALGVFDNRGAPTLEACLQATMSLILWLKFLYFLRIFQSTGYLIRIIIEVCVDMRHFLLILVLTFVAFGDAMRSI--STSNEDVPDESGNTSQFVGSYVE--------------SVTFTYRMVLGDFDTSNFGQVALPYV-WILFILCTVFNMIIMLNLLVAIISE 1536          
BLAST of jgi.p|Trimin1|161047 vs. uniprot
Match: F2USX8_SALR5 (Nudt9 protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2USX8_SALR5)

HSP 1 Score: 81.6 bits (200), Expect = 1.260e-13
Identity = 83/283 (29.33%), Postives = 139/283 (49.12%), Query Frame = 1
Query:   16 LFDTASMAAAVEVHWQLYGRSGHIRSLGLYILLISDFVVCTIWFHALSFGTLAERITAWALQAIKLVLALWFLR--KELRQLQSQGGPLKEQIQEYFTDPWNLLDLS--AYALLFIGVAAQVSTR-KSLLADCTNSIVALLLWFKLLYFMRPFRSTGPLINTIFEIMADMRTFLVILLVVVVGFANAFYAILGRALTEQECDEKSTSTARASCYEKLAAGPSPSFSSPWKAVRSSLSYML-GGYDLDELDAGSAPVLLSLLWLACMLLVTIILLNVLIAIISE 846
            LF   ++ AAV++ W  YGR+        Y++ +     C + F +L+  T     +    +A+   ++L  L    E++QL             YF++ WN LD++  A  L F  +  Q  T+ ++LLA        ++ W +LLYF+ PF STGPLI  I EI+ D   FL++L+ VV+G +N+ + +L  +         S+  A  S +          FS    A+ +S + +L G YD    D  S  +   ++++A M +  +ILLN+LIAI+S+
Sbjct:  904 LFQLLALRAAVQLRWVTYGRTLFFFEGVQYLVSL-----CLLVFLSLTMTTFGTPPSGSHYRAVIATISLTSLAALNEVKQLLRSRS-------RYFSNIWNWLDMARAALTLSFCILHLQGDTQARTLLA-----YAVIVQWLRLLYFLLPFDSTGPLIIMILEILKDTYVFLIVLVTVVLGASNSLFVLLHHS---------SSGVASTSSFASA-----DGFSDVALALFTSANMLLFGDYDQTLFDDSSDGISARVIFVAVMFVTLVILLNLLIAILSD 1155          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161047 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CKV9_9STRA3.450e-193100.00Ion transport protein-domain-containing protein n=... [more]
A0A836CMZ4_9STRA4.870e-2229.53Ion_trans domain-containing protein n=1 Tax=Tribon... [more]
A0A835YQC1_9STRA3.660e-1644.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A077ZT76_STYLE7.840e-1532.72Wd-40 repeat protein n=1 Tax=Stylonychia lemnae Ta... [more]
J9J443_9SPIT1.550e-1433.02WD-40 repeat protein n=1 Tax=Oxytricha trifallax T... [more]
A0A078AS47_STYLE4.180e-1430.40Wd-40 repeat protein n=1 Tax=Stylonychia lemnae Ta... [more]
J9INY9_9SPIT5.260e-1431.96Ion_trans domain-containing protein n=1 Tax=Oxytri... [more]
A0A078A129_STYLE6.930e-1427.65Wd-40 repeat protein n=1 Tax=Stylonychia lemnae Ta... [more]
J9F7S2_9SPIT6.950e-1429.33WD-40 repeat protein n=1 Tax=Oxytricha trifallax T... [more]
F2USX8_SALR51.260e-1329.33Nudt9 protein n=1 Tax=Salpingoeca rosetta (strain ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_15contigContig_15:375037..377053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161047|e_gw1.15.133.1
KEGG TC1.A.4.5.10,1.A.4.5.5,1.A.4.5.6,1.A.4.5.9
BRITEko00000,ko00001,ko01000,ko04040
KEGG Pathwayko04621,ko04921,map04621,map04921
KEGG koko:K04977,ko:K04978
EC3.6.1.13
GOsGO:0000041,GO:0003674,GO:0005215,GO:0005216,GO:0005217,GO:0005261,GO:0005385,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008324,GO:0010960,GO:0015075,GO:0015267,GO:0015276,GO:0015318,GO:0016020,GO:0016021,GO:0022803,GO:0022834,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0032991,GO:0034220,GO:0034702,GO:0034703,GO:0042592,GO:0044425,GO:0046873,GO:0046915,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0055065,GO:0055069,GO:0055076,GO:0055080,GO:0055085,GO:0065007,GO:0065008,GO:0070838,GO:0071577,GO:0072507,GO:0072509,GO:0072511,GO:0097682,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0099094,GO:1902495,GO:1990351
Preferred nameTRPM
Descriptioncalcium channel activity
COG categoryPT
Max annot lvl33154|Opisthokonta
EggNOG OGsKOG3614@1|root,KOG3676@1|root,KOG4195@1|root,KOG3614@2759|Eukaryota,KOG3676@2759|Eukaryota,KOG4195@2759|Eukaryota,38D2H@33154|Opisthokonta
Evalue2.07e-14
Seed ortholog946362.XP_004987771.1
Hectar predicted targeting categoryother localisation
TranscriptId161369
TrackFilteredModels1
ProteinId161047
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161047gene_3892Tribonema minus UTEX_B_3156 geneContig_15 375037..377053 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3892_1exon_3892_1Tribonema minus UTEX_B_3156 exonContig_15 375037..375418 +
exon_3892_2exon_3892_2Tribonema minus UTEX_B_3156 exonContig_15 375874..375952 +
exon_3892_3exon_3892_3Tribonema minus UTEX_B_3156 exonContig_15 376663..377053 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3892CDS_3892Tribonema minus UTEX_B_3156 CDSContig_15 375037..375418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161047Trimin1|161047|e_gw1.15.133.1Tribonema minus UTEX_B_3156 polypeptideContig_15 375037..377053 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3892 ID=mRNA_3892|Name=jgi.p|Trimin1|161047|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=852bp|location=Sequence derived from alignment at Contig_15:375037..377053+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCAACAGCCCCGCGCTCTTCGACACCGCCAGCATGGCTGCAGCGGTCGA
GGTGCACTGGCAGTTATACGGCAGATCCGGCCACATCCGCTCCCTGGGGC
TCTACATCCTGCTCATAAGCGACTTCGTCGTGTGCACAATATGGTTTCAT
GCCCTATCCTTCGGCACGCTTGCGGAGCGCATCACTGCGTGGGCACTGCA
AGCCATCAAGCTGGTGCTGGCGCTCTGGTTTCTGCGCAAAGAGCTGCGGC
AGCTGCAGTCGCAAGGCGGCCCGTTGAAGGAGCAGATCCAGGAGTACTTC
ACTGACCCGTGGAACCTGCTGGACTTGTCGGCATACGCGCTGCTCTTCAT
CGGCGTGGCCGCACAGGTTAGTACTAGAAAATCGCTGCTGGCAGACTGCA
CCAACAGCATCGTCGCCCTGCTGCTGTGGTTCAAACTCTTGTACTTCATG
CGCCCCTTTCGGTCAACGGGGCCGCTGATCAACACCATCTTTGAGATCAT
GGCCGACATGCGCACCTTCCTGGTCATCCTGCTGGTGGTGGTGGTGGGCT
TCGCCAACGCCTTCTACGCCATACTCGGCCGCGCGCTCACTGAGCAAGAG
TGCGACGAAAAGTCAACTTCAACTGCCCGGGCCAGCTGCTACGAAAAGCT
GGCAGCAGGACCGTCCCCCTCTTTCAGCTCTCCCTGGAAGGCAGTGCGGT
CAAGTCTGTCCTACATGTTGGGGGGCTATGACCTGGATGAATTGGATGCG
GGGAGTGCGCCAGTGCTGCTGTCGCTGCTGTGGCTGGCGTGCATGCTGCT
GGTGACCATCATTCTTCTTAACGTGCTCATTGCAATCATCAGCGAAAGGT
GA
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protein sequence of jgi.p|Trimin1|161047

>Trimin1|161047|e_gw1.15.133.1 ID=Trimin1|161047|e_gw1.15.133.1|Name=jgi.p|Trimin1|161047|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=284bp
LNSPALFDTASMAAAVEVHWQLYGRSGHIRSLGLYILLISDFVVCTIWFH
ALSFGTLAERITAWALQAIKLVLALWFLRKELRQLQSQGGPLKEQIQEYF
TDPWNLLDLSAYALLFIGVAAQVSTRKSLLADCTNSIVALLLWFKLLYFM
RPFRSTGPLINTIFEIMADMRTFLVILLVVVVGFANAFYAILGRALTEQE
CDEKSTSTARASCYEKLAAGPSPSFSSPWKAVRSSLSYMLGGYDLDELDA
GSAPVLLSLLWLACMLLVTIILLNVLIAIISER*
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mRNA from alignment at Contig_15:375037..377053+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3892 ID=mRNA_3892|Name=jgi.p|Trimin1|161047|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2017bp|location=Sequence derived from alignment at Contig_15:375037..377053+ (Tribonema minus UTEX_B_3156 )
CTCAACAGCCCCGCGCTCTTCGACACCGCCAGCATGGCTGCAGCGGTCGA GGTGCACTGGCAGTTATACGGCAGATCCGGCCACATCCGCTCCCTGGGGC TCTACATCCTGCTCATAAGCGACTTCGTCGTGTGCACAATATGGTTTCAT GCCCTATCCTTCGGCACGCTTGCGGAGCGCATCACTGCGTGGGCACTGCA AGCCATCAAGCTGGTGCTGGCGCTCTGGTTTCTGCGCAAAGAGCTGCGGC AGCTGCAGTCGCAAGGCGGCCCGTTGAAGGAGCAGATCCAGGAGTACTTC ACTGACCCGTGGAACCTGCTGGACTTGTCGGCATACGCGCTGCTCTTCAT CGGCGTGGCCGCACAGGTTAGTACTAGAAAATGTGTATGTCTATTTGAGT GCCAGCCTGAGGCGCAGTGACCATCGAGCTTGTGAGTGAGATGAGTCCAA GTCTTGTGGCAACCATGAGAAGACAAGTGTAGATGGCGCAGTAATGATTG AGCATGAGGTGCTGCTTCTTGGAATGGCAATATAAGCAACGCTGCACCAG GGTATGCTGCTAGTTGCCTGATGAAAGTAGAGTCATGTGGTGTTTACACT CTCTACGGCAGCTGCAACTGGAGTTTCGATGCCTTTGCCATACCATTGTC ATCGCCCCCTCATGTCTGAATTGAACTCTTGTTCCTCTCAAATGACATGA TTCAGCTAAGACACACAATTTTTTCACTGAAGCTCCAAGGTGCCAAGGGA GCTGCATGGCATGACGTACCAGTGATCACACACTCTCACCACTCTGCCAT ACATTATTGCCTTAATTGCAGATTGCTGCGCGTGGAGCGCTGCTGGCAGA CTGCACCAACAGCATCGTCGCCCTGCTGCTGTGGTTCAAACTCTTGTACT TCATGCGCCCCTTTCGGTGAGTGATGAACTGTGGCAGTGTGGGCGTCAAG TTGCACAGGTAGGGACAACAGCAAGGCAGATAGATGGTCACGAAAACAAT TGAAGAGTCATGTTATGCCATAAACATCAAGTCAGATTCATTTGTGGAGC TTGCAAGCCACAGCAATATTGTCAGGCAAGTTTTGTGCAATATCTTATTG TCGAAAGGTCCTATGACAAGGAGCTATGCTTGGTACACGCAATCCAATTG TGACCACTTCGACATCCTGGCAGTTGGGTAATACATGCACATGTGCCATG TTGTAATCATACAAGTGGCTTGTCAAGTGCCGTATTTCTGTAATACGGCA ACTTGGTTGCTTGTCTGCACTATCATGTCAAACGAGGAACTGACGCTACG CTCAAGCGCTTGTAGTCAGGCGCACATTCACTCACCACAGCATTAGCTTC ATCCCGATGCTGCTTACATCACTTACAAGACTCAGCTAGCCTTAGGCGCA TGATTGTATAAGCTGATACTTCGAAGTATGTTGACCTGCCTCGTGTGACT GTTGGGCGCTTGACAATACCTACTGCCCGTGATAGCATGGTGCACGATTC AGAATACCACTTCGGTGCCGCAATATCCCAGACATACATAAGCATTTGCA ATTTACCTTCTTACATTGGCTTGCCTGCAAAGCGCTTTGCGTATTTCAAC TTGAACTTGCCCGCTTTCCTCTGCAGGTCAACGGGGCCGCTGATCAACAC CATCTTTGAGATCATGGCCGACATGCGCACCTTCCTGGTCATCCTGCTGG TGGTGGTGGTGGGCTTCGCCAACGCCTTCTACGCCATACTCGGCCGCGCG CTCACTGAGCAAGAGTGCGACGAAAAGTCAACTTCAACTGCCCGGGCCAG CTGCTACGAAAAGCTGGCAGCAGGACCGTCCCCCTCTTTCAGCTCTCCCT GGAAGGCAGTGCGGTCAAGTCTGTCCTACATGTTGGGGGGCTATGACCTG GATGAATTGGATGCGGGGAGTGCGCCAGTGCTGCTGTCGCTGCTGTGGCT GGCGTGCATGCTGCTGGTGACCATCATTCTTCTTAACGTGCTCATTGCAA TCATCAGCGAAAGGTGA
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Coding sequence (CDS) from alignment at Contig_15:375037..377053+

>mRNA_3892 ID=mRNA_3892|Name=jgi.p|Trimin1|161047|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=852bp|location=Sequence derived from alignment at Contig_15:375037..377053+ (Tribonema minus UTEX_B_3156 )
CTCAACAGCCCCGCGCTCTTCGACACCGCCAGCATGGCTGCAGCGGTCGA
GGTGCACTGGCAGTTATACGGCAGATCCGGCCACATCCGCTCCCTGGGGC
TCTACATCCTGCTCATAAGCGACTTCGTCGTGTGCACAATATGGTTTCAT
GCCCTATCCTTCGGCACGCTTGCGGAGCGCATCACTGCGTGGGCACTGCA
AGCCATCAAGCTGGTGCTGGCGCTCTGGTTTCTGCGCAAAGAGCTGCGGC
AGCTGCAGTCGCAAGGCGGCCCGTTGAAGGAGCAGATCCAGGAGTACTTC
ACTGACCCGTGGAACCTGCTGGACTTGTCGGCATACGCGCTGCTCTTCAT
CGGCGTGGCCGCACAGGTTAGTACTAGAAAATCGCTGCTGGCAGACTGCA
CCAACAGCATCGTCGCCCTGCTGCTGTGGTTCAAACTCTTGTACTTCATG
CGCCCCTTTCGGTCAACGGGGCCGCTGATCAACACCATCTTTGAGATCAT
GGCCGACATGCGCACCTTCCTGGTCATCCTGCTGGTGGTGGTGGTGGGCT
TCGCCAACGCCTTCTACGCCATACTCGGCCGCGCGCTCACTGAGCAAGAG
TGCGACGAAAAGTCAACTTCAACTGCCCGGGCCAGCTGCTACGAAAAGCT
GGCAGCAGGACCGTCCCCCTCTTTCAGCTCTCCCTGGAAGGCAGTGCGGT
CAAGTCTGTCCTACATGTTGGGGGGCTATGACCTGGATGAATTGGATGCG
GGGAGTGCGCCAGTGCTGCTGTCGCTGCTGTGGCTGGCGTGCATGCTGCT
GGTGACCATCATTCTTCTTAACGTGCTCATTGCAATCATCAGCGAAAGGT
GA
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