mRNA_3892 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|161047 vs. uniprot
Match: A0A836CKV9_9STRA (Ion transport protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKV9_9STRA) HSP 1 Score: 539 bits (1388), Expect = 3.450e-193 Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 1 Query: 1 LNSPALFDTASMAAAVEVHWQLYGRSGHIRSLGLYILLISDFVVCTIWFHALSFGTLAERITAWALQAIKLVLALWFLRKELRQLQSQGGPLKEQIQEYFTDPWNLLDLSAYALLFIGVAAQVSTRKSLLADCTNSIVALLLWFKLLYFMRPFRSTGPLINTIFEIMADMRTFLVILLVVVVGFANAFYAILGRALTEQECDEKSTSTARASCYEKLAAGPSPSFSSPWKAVRSSLSYMLGGYDLDELDAGSAPVLLSLLWLACMLLVTIILLNVLIAIISER 849 LNSPALFDTASMAAAVEVHWQLYGRSGHIRSLGLYILLISDFVVCTIWFHALSFGTLAERITAWALQAIKLVLALWFLRKELRQLQSQGGPLKEQIQEYFTDPWNLLDLSAYALLFIGVAAQVSTRKSLLADCTNSIVALLLWFKLLYFMRPFRSTGPLINTIFEIMADMRTFLVILLVVVVGFANAFYAILGRALTEQECDEKSTSTARASCYEKLAAGPSPSFSSPWKAVRSSLSYMLGGYDLDELDAGSAPVLLSLLWLACMLLVTIILLNVLIAIISER Sbjct: 1 LNSPALFDTASMAAAVEVHWQLYGRSGHIRSLGLYILLISDFVVCTIWFHALSFGTLAERITAWALQAIKLVLALWFLRKELRQLQSQGGPLKEQIQEYFTDPWNLLDLSAYALLFIGVAAQVSTRKSLLADCTNSIVALLLWFKLLYFMRPFRSTGPLINTIFEIMADMRTFLVILLVVVVGFANAFYAILGRALTEQECDEKSTSTARASCYEKLAAGPSPSFSSPWKAVRSSLSYMLGGYDLDELDAGSAPVLLSLLWLACMLLVTIILLNVLIAIISER 283
BLAST of jgi.p|Trimin1|161047 vs. uniprot
Match: A0A836CMZ4_9STRA (Ion_trans domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMZ4_9STRA) HSP 1 Score: 105 bits (262), Expect = 4.870e-22 Identity = 88/298 (29.53%), Postives = 135/298 (45.30%), Query Frame = 1 Query: 1 LNSPALFDTASMAAAVEVHWQLYGRSGHI-RSLGLYILLISDFVVCTIWFHALSFGTLAERITAWALQAIKLVLALWFLRKELRQLQSQGGPLKEQIQEYFTDPWNLLDLSAYALLFIGVAAQVSTRKSLLADCTNSIVAL-------------LLWFKLLYFMRPFRSTGPLINTIFEIMADMRTFLVILLVVVVGFANAFYAILGRALTEQECDEKSTSTARASCYEKLAAGPSP---SFSSPWKAVRSSLSYMLGGYDLDELDAGSAPVLLSLLWLACMLLVTIILLNVLIAIIS 843 L LF T +AA V+ +W + R L++ L+ FV+ + WF +W + KL + + E ++ + I +Y D WNL+D Y L+ G+A + + A+ +S AL LLWFK++YF+ R L+ILLVV++GFANAFY IL T A ++L G P SFS+ W++VRS ++Y+ G +DL+ELD G P LLS LW M+L ++LL ++I ++ Sbjct: 129 LGHSDLFGTPVVAALVQAYWHKSRSEMRLMRQCVLHLGLLVSFVLASRWF-------------SWVFEVAKLAFLVPLILHERLSFRAN----EHSIGKYLEDSWNLVDPIMYLLVIAGIAMRAAVHILSSANGADSAAALXXXXXXXXXXXXXLLWFKIIYFL--------------------RLILLILLVVLLGFANAFYVILKHPDHPPSACAAETDAA----LKQLCEGAEPPPGSFSTMWRSVRSVMAYVFGDFDLNELDEGPTPALLSCLWFLLMVLAPVLLLKIIITLLG 385
BLAST of jgi.p|Trimin1|161047 vs. uniprot
Match: A0A835YQC1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQC1_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 3.660e-16 Identity = 51/114 (44.74%), Postives = 79/114 (69.30%), Query Frame = 1 Query: 508 MRTFLVILLVVVVGFANAFYAILGRALTEQECDEKSTSTARASCYEKLAAGPSP--SFSSPWKAVRSSLSYMLGGYDLDELDAGSAPVLLSLLWLACMLLVTIILLNVLIAIIS 843 +R FLVILL+ ++GFANAFYAILG+ + ST + ++L P SF++PW+A+R++L+Y+ G +DL LD G PVLLSLLW A M+++ ++LLN++IA+++ Sbjct: 13 LRLFLVILLLALLGFANAFYAILGK----EGSGAVDCSTVQDGDLQELCQANEPPGSFATPWRAIRTTLAYVFGDFDLAALDDGPTPVLLSLLWCALMVVLPVLLLNLIIAVLN 122
BLAST of jgi.p|Trimin1|161047 vs. uniprot
Match: A0A077ZT76_STYLE (Wd-40 repeat protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A077ZT76_STYLE) HSP 1 Score: 85.1 bits (209), Expect = 7.840e-15 Identity = 71/217 (32.72%), Postives = 112/217 (51.61%), Query Frame = 1 Query: 214 VLALWFLRKELRQLQSQGGPLKEQIQEYFTDPWNLLDLSAYALLFIGVAAQVSTRKSL-----LADCTNSIVALLLWFKLLYFMRPFRSTGPLINTIFEIMADMRTFLVILLVVVVGFANAFYAILGRALTEQECDEKSTSTARASCYEKLAAGPSPSFSSPWKAVRSSLSYMLGGYDLDELDAGSAPVLLSL-LWLACMLLVTIILLNVLIAIISE 846 + A +FL EL+QLQS +YFTD WN +D+ +++ V + V + L SIV +WFK LYF+R ++ TG LI IFE+++DMR F ++LL+ +V F ++F I A Q+ +++ T+ G S +K + LG ++ D+ G V L++ L+L C + I++LN+LIAIISE Sbjct: 576 LFASYFLLNELKQLQSGS--------DYFTDLWNYIDIIPPIGIYVFVVSAVLNDYGIQYGEDLERSIQSIVTFFMWFKFLYFLRIYKRTGYLIRMIFEVISDMRYFFIVLLITIVAFGDSFLKI---ANANQDTEKRFTT------------GFIDSIIFTYKMI-------LGDFETDKF--GDVAVSLAMTLFLLCTIFNMIVMLNLLIAIISE 760
BLAST of jgi.p|Trimin1|161047 vs. uniprot
Match: J9J443_9SPIT (WD-40 repeat protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9J443_9SPIT) HSP 1 Score: 84.3 bits (207), Expect = 1.550e-14 Identity = 70/212 (33.02%), Postives = 107/212 (50.47%), Query Frame = 1 Query: 211 LVLALWFLRKELRQLQSQGGPLKEQIQEYFTDPWNLLDLSAYALLFIGVAAQVSTRKSLLADCTNSIVALLLWFKLLYFMRPFRSTGPLINTIFEIMADMRTFLVILLVVVVGFANAFYAILGRALTEQECDEKSTSTARASCYEKLAAGPSPSFSSPWKAVRSSLSYMLGGYDLDELDAGSAPVLLSLLWLACMLLVTIILLNVLIAIISE 846 L+++ +FL E++QL SQG EY WN DL ++ + V K +S+ +L +WFK LYF+R F+ TG LI I E++ DM+ F V+L+VV+ F +AF + L+ DE S A A+ + A+ S LG + LDE D + + +++L +LV I++LN+LIAIISE Sbjct: 1356 LLVSTYFLVTEVKQLFSQGI-------EYLFSIWNYFDLIPPIIIPLIVLQDFLRIKYDFQHSLHSVASLFMWFKFLYFLRIFKETGYLIRMIVEVVKDMKVFFVVLIVVLAAFGDAFLS-----LSNSSADE-SARFAGANFFT---------------ALLYSYRTSLGDFQLDEYDNNAQSLTTWIMFLFASILVLIVMLNLLIAIISE 1539
BLAST of jgi.p|Trimin1|161047 vs. uniprot
Match: A0A078AS47_STYLE (Wd-40 repeat protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AS47_STYLE) HSP 1 Score: 82.8 bits (203), Expect = 4.180e-14 Identity = 69/227 (30.40%), Postives = 112/227 (49.34%), Query Frame = 1 Query: 196 LQAIKLVLALWFLRKELRQLQSQGGPLKEQIQEYFTDPWNLLD----LSAYALLFIGVAAQV------STRKSLLADCTNSIVALLLWFKLLYFMRPFRSTGPLINTIFEIMADMRTFLVILLVVVVGFANAFYAILGRALTEQECDEKSTSTARASCYEKLAAGPSPSFSSPWKAVRSSLSYMLGGYDLDELDAGSAPVLLSLLWLACMLLVTIILLNVLIAIISE 846 L A+ L+ A++F+ E+RQ QG +YF WN +D L +A I V ++ +T++S+ +I +WFK LYF+R FRST LI IFE++ DMR F +LL+ ++ F ++F +I + E D + S + Y + +LG ++ D+ + P L+ +L+L C + I++LN+LIAIISE Sbjct: 399 LLAVNLIFAVYFIHNEIRQFCLQGT-------KYFQSYWNYIDMIPPLGIFAFTIITVLSEYDYEIDEATKRSI-----QAITTFFMWFKFLYFLRIFRSTSYLITMIFEVIYDMRFFFAVLLITMIAFGDSFLSI---SYGNNELDRFTHSFTDSIIY--------------------TYRMILGDFETDKFGEVAKP-LVIILFLLCTIFNMIVMLNLLIAIISE 589
BLAST of jgi.p|Trimin1|161047 vs. uniprot
Match: J9INY9_9SPIT (Ion_trans domain-containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9INY9_9SPIT) HSP 1 Score: 82.8 bits (203), Expect = 5.260e-14 Identity = 70/219 (31.96%), Postives = 109/219 (49.77%), Query Frame = 1 Query: 199 QAIKLVLALWFLRKELRQLQSQGGPLKEQIQEYFTDPWNLLDLSAYALLFIGVAAQVSTRKSLLADCTNSIVALLLWFKLLYFMRPFRSTGPLINTIFEIMADMRTFLVILLVVVVGFANAFYAILGRALTEQECDEKSTSTARASCYEKLAAGP--SPSFSSPWKAVRSSLSYMLGGYDLDELDAGSAPVLLSLL-WLACMLLVTIILLNVLIAIISE 846 + + ++L L+F ELRQ+ QG + +Y PWN LD+ L+ I ++ + + N++ +W K LYF R FR T I+ I I++D+R F+V+ LV + F N+ Y + ECD + A E+ AG S + A R SL D D D GS V+L+LL ++ L +TI++LN+LIA+IS+ Sbjct: 1574 KVLVIILTLYFFALELRQMFLQG------MGKYLGSPWNYLDIIPLVLISISMSFENLGIPANYERPCNAVACFFMWIKFLYFWRIFRQTSKFISMIVAIISDLRVFMVVFLVTLTAFGNSMYIMSNN---NPECD----AACEALPEEERPAGRFIGSLADSVFFAYRMSLG------DFDTTDLGSVYVVLALLTFVVATLFLTIMMLNILIAVISD 1773
BLAST of jgi.p|Trimin1|161047 vs. uniprot
Match: A0A078A129_STYLE (Wd-40 repeat protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078A129_STYLE) HSP 1 Score: 82.4 bits (202), Expect = 6.930e-14 Identity = 81/293 (27.65%), Postives = 134/293 (45.73%), Query Frame = 1 Query: 4 NSPALFDTASMAAAVEVHWQLYGRSGHIRSLGLYILL--ISDFVVCTIWFHALSFGTLAERITAW----ALQAIKLVLALWFLRKELRQLQSQGGPLKEQIQEYFTDPWNLLDLSAYALLFIGVAAQVSTRKSLLADCTN------SIVALLLWFKLLYFMRPFRSTGPLINTIFEIMADMRTFLVILLVVVVGFANAFYAILGRALTEQECDEKSTSTARASCYEKLAAGPSPSFSSPWKAVRSSLSYMLGGYDLDELDAGSAPVLLSLLWLACMLLVTIILLNVLIAIISE 846 N LF S+ + ++ W L R I+ L + + ++ + ++ FG + W L A+ + +++FL E+RQ G +Y + WN D+ L+ + V+ +++T + + N S+ LL+W KLLYF+R FRSTG L+ T+ +++ DM+ FL+IL +V GF AF L+E+ E A C+ A R S+ G D D PV L ++W+ +L I++LN+LI+IISE Sbjct: 1268 NDIELFSYRSIQSVIDYKWPL-AREYTIKVLFIPFIFYQLTFLIYSNVFCGQFQFGEDKYSDSWWIGHNVLAALLYLFSIYFLSNEIRQFYVTGI-------DYLSSVWNYSDILPPILIIVVVSLKLNTYYNEDYEPNNFIYTVHSVATLLMWIKLLYFLRIFRSTGYLVRTLTDVIYDMKVFLLILFIVYFGFGEAFLR-----LSEKSDPEMQFIQNYAYCWVY--------------AFRLSI----GDNATDTFDDTIQPVTLWIIWVIAGILTNIVMLNLLISIISE 1529
BLAST of jgi.p|Trimin1|161047 vs. uniprot
Match: J9F7S2_9SPIT (WD-40 repeat protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9F7S2_9SPIT) HSP 1 Score: 82.4 bits (202), Expect = 6.950e-14 Identity = 83/283 (29.33%), Postives = 135/283 (47.70%), Query Frame = 1 Query: 16 LFDTASMAAAVEVHWQLYGRSGHIRSLGL-YILLISDFVVCTIWFHALSFGTLAERITAWALQAIKLVLALWFLRKELRQLQSQGGPLKEQIQEYFTDPWNLLDLSAYALL--FIGVAAQV---STRKSLLADCTNSIVALLLWFKLLYFMRPFRSTGPLINTIFEIMADMRTFLVILLVVVVGFANAFYAILGRALTEQECDEKSTSTARASCYEKLAAGPSPSFSSPWKAVRSSLSYMLGGYDLDELDAGSAPVLLSLLWLACMLLVTIILLNVLIAIISE 846 LF++ ++ A+E W L R I+ L + +IL +S ++V + + + + + L +L+F+ E+ QL+ +G EY WN LDL LL FI +AA + L C + ++L+LW K LYF+R F+STG LI I E+ DMR FL+IL++ V F +A +I E DE ++ Y + +V + +LG +D + P + +L++ C + II+LN+L+AIISE Sbjct: 1279 LFNSKAIRKAIEYKWPLT-REYTIKKLFIPFILFLSFYLVYMNYIFYMRETSDDWMLINYGFMVPLLFFSLYFVHNEITQLKHEG-------LEYLKSVWNYLDLIPPFLLMAFIPLAALGVFDNRGAPTLEACLQATMSLILWLKFLYFLRIFQSTGYLIRIIIEVCVDMRHFLLILVLTFVAFGDAMRSI--STSNEDVPDESGNTSQFVGSYVE--------------SVTFTYRMVLGDFDTSNFGQVALPYV-WILFILCTVFNMIIMLNLLVAIISE 1536
BLAST of jgi.p|Trimin1|161047 vs. uniprot
Match: F2USX8_SALR5 (Nudt9 protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2USX8_SALR5) HSP 1 Score: 81.6 bits (200), Expect = 1.260e-13 Identity = 83/283 (29.33%), Postives = 139/283 (49.12%), Query Frame = 1 Query: 16 LFDTASMAAAVEVHWQLYGRSGHIRSLGLYILLISDFVVCTIWFHALSFGTLAERITAWALQAIKLVLALWFLR--KELRQLQSQGGPLKEQIQEYFTDPWNLLDLS--AYALLFIGVAAQVSTR-KSLLADCTNSIVALLLWFKLLYFMRPFRSTGPLINTIFEIMADMRTFLVILLVVVVGFANAFYAILGRALTEQECDEKSTSTARASCYEKLAAGPSPSFSSPWKAVRSSLSYML-GGYDLDELDAGSAPVLLSLLWLACMLLVTIILLNVLIAIISE 846 LF ++ AAV++ W YGR+ Y++ + C + F +L+ T + +A+ ++L L E++QL YF++ WN LD++ A L F + Q T+ ++LLA ++ W +LLYF+ PF STGPLI I EI+ D FL++L+ VV+G +N+ + +L + S+ A S + FS A+ +S + +L G YD D S + ++++A M + +ILLN+LIAI+S+ Sbjct: 904 LFQLLALRAAVQLRWVTYGRTLFFFEGVQYLVSL-----CLLVFLSLTMTTFGTPPSGSHYRAVIATISLTSLAALNEVKQLLRSRS-------RYFSNIWNWLDMARAALTLSFCILHLQGDTQARTLLA-----YAVIVQWLRLLYFLLPFDSTGPLIIMILEILKDTYVFLIVLVTVVLGASNSLFVLLHHS---------SSGVASTSSFASA-----DGFSDVALALFTSANMLLFGDYDQTLFDDSSDGISARVIFVAVMFVTLVILLNLLIAILSD 1155 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161047 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3892 ID=mRNA_3892|Name=jgi.p|Trimin1|161047|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=852bp|location=Sequence derived from alignment at Contig_15:375037..377053+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTCAACAGCCCCGCGCTCTTCGACACCGCCAGCATGGCTGCAGCGGTCGAback to top protein sequence of jgi.p|Trimin1|161047 >Trimin1|161047|e_gw1.15.133.1 ID=Trimin1|161047|e_gw1.15.133.1|Name=jgi.p|Trimin1|161047|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=284bp LNSPALFDTASMAAAVEVHWQLYGRSGHIRSLGLYILLISDFVVCTIWFHback to top mRNA from alignment at Contig_15:375037..377053+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3892 ID=mRNA_3892|Name=jgi.p|Trimin1|161047|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2017bp|location=Sequence derived from alignment at Contig_15:375037..377053+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_15:375037..377053+ >mRNA_3892 ID=mRNA_3892|Name=jgi.p|Trimin1|161047|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=852bp|location=Sequence derived from alignment at Contig_15:375037..377053+ (Tribonema minus UTEX_B_3156 )back to top |