Trimin1|353160|estExt_Genemark1.C_Ctg_1470003 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|353160
Unique Name	Trimin1\|353160\|estExt_Genemark1.C_Ctg_1470003
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	230

Homology

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BLAST of jgi.p|Trimin1|353160 vs. uniprot
Match: A0A835Z929_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z929_9STRA)

HSP 1 Score: 351 bits (901), Expect = 9.030e-121
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0

Query:    1 MTAAKRGPKPKRAPTVHKLRRPAAAATKPESGIGADGGXXXXXXXXXXXXXXXXXXXXXXXXXXXELQRQLAAQVLPRHPAPHSGQILGSAERQFLESFIMSHEGCGVLDNTVLQQTAFRLMTHGAGGLSRLMEGQGTLAVTVAAANGSLLWERXXXXXXXXXXXXXXXXSALACGAAMLHPIDRPRLEAYIECAAVTLRQCSDAPTMEVLRGHLTLAWLYMMLDDFAG 229
            MTAAKRGPKPKRAPTVHKLRRPAAAATKPESGIGADGGXXXXXXXXXXXXXXXXXXXXXXXXXXXELQRQLAAQVLPRHPAPHSGQILGSAERQFLESFIMSHEGCGVLDNTVLQQTAFRLMTHGAGGLSRLMEGQGTLAVTVAAANGSLLWERXXXXXXXXXXXXXXXXSALACGAAMLHPIDRPRLEAYIECAAVTLRQCSDAPTMEVLRGHLTLAWLYMMLDDFAG
Sbjct:    1 MTAAKRGPKPKRAPTVHKLRRPAAAATKPESGIGADGGXXXXXXXXXXXXXXXXXXXXXXXXXXXELQRQLAAQVLPRHPAPHSGQILGSAERQFLESFIMSHEGCGVLDNTVLQQTAFRLMTHGAGGLSRLMEGQGTLAVTVAAANGSLLWERXXXXXXXXXXXXXXXXSALACGAAMLHPIDRPRLEAYIECAAVTLRQCSDAPTMEVLRGHLTLAWLYMMLDDFAG 229

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BLAST of jgi.p|Trimin1|353160 vs. uniprot
Match: A0A836CHH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH6_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.710e-31
Identity = 76/170 (44.71%), Postives = 95/170 (55.88%), Query Frame = 0

Query:   68 QRQLAAQVLPRHPAPHSGQILGSA------ERQFLESFIMSHEGCGVLDNTVLQQTAFRLMTHGAGGLSRLMEGQGTLA--VTVAAANGSLLWERXXXXXXXXXXXXXXXXSALACGAAMLHPIDRPRLEAYIECAAVTLRQCSDAPTMEVLRGHLTLAWLYMMLDDFAG 229
            + QL  Q  P   +   G +L +A      ER++LESF+MSH G GV+    LQ TAFRLMTHG    S  M  QG LA     AAA   LLW                  +AL CGAAM HP++ P +E Y+  A   LR+C DAP +EVLRGH+ LAWL+ +L+DFAG
Sbjct:  266 EHQLVIQRNPGQFSASGGDLLSAADTFGHHERRYLESFLMSHRGLGVMCEDTLQSTAFRLMTHGTCTSSTDMVAQGKLAPQAVAAAAQEGLLW------------------AALGCGAAMQHPVEMPHVERYVRRAGAALRRCGDAPRVEVLRGHVALAWLHNLLEDFAG 417

[Close]

BLAST of jgi.p|Trimin1|353160 vs. uniprot
Match: A0A835Z202_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z202_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.150e-18
Identity = 59/184 (32.07%), Postives = 94/184 (51.09%), Query Frame = 0

Query:   68 QRQLAAQVLPRHPAPHSGQILGSAERQFLESFIMSHEG------------------CGVLDNTVLQQTAFRLMTHGAGGLSRLMEGQGTLAVTVAAANGSLLWERXXXXXXXXXXXXXXXXSALACGAAMLHPIDRPRLEAYIECAAVTLRQCSDA----PTMEVLRGHLTLAWLYMMLDDFAG 229
            Q Q +A  LPRHPA HSGQ+LG+ ER++LE +++++ G                   G++  + LQ+TA RL+ HG  GLS        +A+   AA        XXXX            + +A G+ +  P +    + YI+CA     +C  A    P ++VLR H++LAW +++++D+AG
Sbjct:  533 QLQRSAATLPRHPAIHSGQLLGAKERKYLEVYLLAYMGLGECVWVQQPLQLRRRALAGMVHESELQRTAMRLLAHGRDGLS--------IAIAADAAANXXXXXXXXXXVAVAAANECVLLATIAKGSVLCRPAEAAEAQRYIDCARAAAARCHAAAAGEPLLDVLRAHISLAWAHVLVEDYAG 708

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353160 vs. uniprot

BLAST of jgi.p|Trimin1|353160 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A835Z929_9STRA	9.030e-121	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CHH6_9STRA	2.710e-31	44.71	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835Z202_9STRA	1.150e-18	32.07	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 42..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..71
None	No IPR available	SUPERFAMILY	81995	beta-sandwich domain of Sec23/24	coord: 37..95

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_147	contig	Contig_147:16495..19460 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353160	mRNA_16810	Tribonema minus UTEX_B_3156	mRNA	Contig_147 16495..19460 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|353160|estExt_Genemark1.C_Ctg_1470003 ID=Trimin1|353160|estExt_Genemark1.C_Ctg_1470003|Name=jgi.p|Trimin1|353160|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=230bp
MTAAKRGPKPKRAPTVHKLRRPAAAATKPESGIGADGGGADAQQQQQQRR
RRQQQRQQQQRQQQQELQRQLAAQVLPRHPAPHSGQILGSAERQFLESFI
MSHEGCGVLDNTVLQQTAFRLMTHGAGGLSRLMEGQGTLAVTVAAANGSL
LWERGTSAVIAAAANESLLWSALACGAAMLHPIDRPRLEAYIECAAVTLR
QCSDAPTMEVLRGHLTLAWLYMMLDDFAG*