mRNA_16810 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353160
Unique NamemRNA_16810
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|353160 vs. uniprot
Match: A0A835Z929_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z929_9STRA)

HSP 1 Score: 351 bits (901), Expect = 9.030e-121
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 1 
Query:    1 MTAAKRGPKPKRAPTVHKLRRPAAAATKPESGIGADGGXXXXXXXXXXXXXXXXXXXXXXXXXXXELQRQLAAQVLPRHPAPHSGQILGSAERQFLESFIMSHEGCGVLDNTVLQQTAFRLMTHGAGGLSRLMEGQGTLAVTVAAANGSLLWERXXXXXXXXXXXXXXXXSALACGAAMLHPIDRPRLEAYIECAAVTLRQCSDAPTMEVLRGHLTLAWLYMMLDDFAG 687
            MTAAKRGPKPKRAPTVHKLRRPAAAATKPESGIGADGGXXXXXXXXXXXXXXXXXXXXXXXXXXXELQRQLAAQVLPRHPAPHSGQILGSAERQFLESFIMSHEGCGVLDNTVLQQTAFRLMTHGAGGLSRLMEGQGTLAVTVAAANGSLLWERXXXXXXXXXXXXXXXXSALACGAAMLHPIDRPRLEAYIECAAVTLRQCSDAPTMEVLRGHLTLAWLYMMLDDFAG
Sbjct:    1 MTAAKRGPKPKRAPTVHKLRRPAAAATKPESGIGADGGXXXXXXXXXXXXXXXXXXXXXXXXXXXELQRQLAAQVLPRHPAPHSGQILGSAERQFLESFIMSHEGCGVLDNTVLQQTAFRLMTHGAGGLSRLMEGQGTLAVTVAAANGSLLWERXXXXXXXXXXXXXXXXSALACGAAMLHPIDRPRLEAYIECAAVTLRQCSDAPTMEVLRGHLTLAWLYMMLDDFAG 229
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BLAST of jgi.p|Trimin1|353160 vs. uniprot
Match: A0A836CHH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH6_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.710e-31
Identity = 76/170 (44.71%), Postives = 95/170 (55.88%), Query Frame = 1 
Query:  202 QRQLAAQVLPRHPAPHSGQILGSA------ERQFLESFIMSHEGCGVLDNTVLQQTAFRLMTHGAGGLSRLMEGQGTLA--VTVAAANGSLLWERXXXXXXXXXXXXXXXXSALACGAAMLHPIDRPRLEAYIECAAVTLRQCSDAPTMEVLRGHLTLAWLYMMLDDFAG 687
            + QL  Q  P   +   G +L +A      ER++LESF+MSH G GV+    LQ TAFRLMTHG    S  M  QG LA     AAA   LLW                  +AL CGAAM HP++ P +E Y+  A   LR+C DAP +EVLRGH+ LAWL+ +L+DFAG
Sbjct:  266 EHQLVIQRNPGQFSASGGDLLSAADTFGHHERRYLESFLMSHRGLGVMCEDTLQSTAFRLMTHGTCTSSTDMVAQGKLAPQAVAAAAQEGLLW------------------AALGCGAAMQHPVEMPHVERYVRRAGAALRRCGDAPRVEVLRGHVALAWLHNLLEDFAG 417
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BLAST of jgi.p|Trimin1|353160 vs. uniprot
Match: A0A835Z202_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z202_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.150e-18
Identity = 59/184 (32.07%), Postives = 94/184 (51.09%), Query Frame = 1 
Query:  202 QRQLAAQVLPRHPAPHSGQILGSAERQFLESFIMSHEG------------------CGVLDNTVLQQTAFRLMTHGAGGLSRLMEGQGTLAVTVAAANGSLLWERXXXXXXXXXXXXXXXXSALACGAAMLHPIDRPRLEAYIECAAVTLRQCSDA----PTMEVLRGHLTLAWLYMMLDDFAG 687
            Q Q +A  LPRHPA HSGQ+LG+ ER++LE +++++ G                   G++  + LQ+TA RL+ HG  GLS        +A+   AA        XXXX            + +A G+ +  P +    + YI+CA     +C  A    P ++VLR H++LAW +++++D+AG
Sbjct:  533 QLQRSAATLPRHPAIHSGQLLGAKERKYLEVYLLAYMGLGECVWVQQPLQLRRRALAGMVHESELQRTAMRLLAHGRDGLS--------IAIAADAAANXXXXXXXXXXVAVAAANECVLLATIAKGSVLCRPAEAAEAQRYIDCARAAAARCHAAAAGEPLLDVLRAHISLAWAHVLVEDYAG 708
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353160 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z929_9STRA9.030e-121100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CHH6_9STRA2.710e-3144.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z202_9STRA1.150e-1832.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_147contigContig_147:16495..19460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353160|estExt_Genemark1.C_Ctg_1470003
Hectar predicted targeting categoryother localisation
TranscriptId353482
TrackFilteredModels1
ProteinId353160
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353160gene_16810Tribonema minus UTEX_B_3156 geneContig_147 16495..19460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353160Trimin1|353160|estExt_Genemark1.C_Ctg_1470003Tribonema minus UTEX_B_3156 polypeptideContig_147 16495..19460 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16810_1exon_16810_1Tribonema minus UTEX_B_3156 exonContig_147 16495..16500 +
exon_16810_2exon_16810_2Tribonema minus UTEX_B_3156 exonContig_147 16551..16865 +
exon_16810_3exon_16810_3Tribonema minus UTEX_B_3156 exonContig_147 17686..17772 +
exon_16810_4exon_16810_4Tribonema minus UTEX_B_3156 exonContig_147 18912..18958 +
exon_16810_5exon_16810_5Tribonema minus UTEX_B_3156 exonContig_147 19075..19081 +
exon_16810_6exon_16810_6Tribonema minus UTEX_B_3156 exonContig_147 19233..19460 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16810CDS_16810Tribonema minus UTEX_B_3156 CDSContig_147 16495..16500 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16810 ID=mRNA_16810|Name=jgi.p|Trimin1|353160|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=690bp|location=Sequence derived from alignment at Contig_147:16495..19460+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGCGGCCAAGCGCGGGCCCAAGCCCAAGAGAGCGCCCACGGTGCA
CAAGCTGAGGCGCCCCGCTGCCGCTGCCACAAAGCCAGAGTCCGGCATCG
GCGCCGACGGCGGTGGCGCTGATGCTCAGCAGCAGCAGCAGCAGCGGCGG
CGGCGGCAGCAGCAGCGGCAGCAGCAGCAGCGGCAGCAGCAGCAGGAGCT
GCAGCGGCAGCTGGCAGCGCAGGTGCTGCCGCGGCACCCCGCACCGCACT
CCGGCCAGATCCTGGGCAGCGCCGAGAGGCAGTTCCTGGAGAGCTTCATC
ATGTCGCACGAGGGCTGTGGGGTGTTGGACAACACCGTGCTTCAGCAAAC
GGCCTTCAGGCTCATGACGCACGGCGCAGGCGGCCTCAGCAGGCTCATGG
AGGGGCAGGGGACGCTGGCGGTGACCGTGGCGGCGGCGAATGGGTCGTTG
CTCTGGGAACGCGGAACGTCTGCGGTCATCGCAGCGGCGGCGAACGAGTC
GTTGCTCTGGTCCGCACTCGCATGCGGCGCAGCGATGCTCCACCCCATCG
ACCGGCCGCGCCTCGAAGCGTACATCGAGTGCGCCGCGGTGACGCTGCGT
CAGTGCTCCGACGCGCCGACCATGGAGGTGCTGCGCGGCCACCTGACGCT
CGCGTGGCTCTACATGATGCTGGACGACTTTGCCGGGTGA
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protein sequence of jgi.p|Trimin1|353160

>Trimin1|353160|estExt_Genemark1.C_Ctg_1470003 ID=Trimin1|353160|estExt_Genemark1.C_Ctg_1470003|Name=jgi.p|Trimin1|353160|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=230bp
MTAAKRGPKPKRAPTVHKLRRPAAAATKPESGIGADGGGADAQQQQQQRR
RRQQQRQQQQRQQQQELQRQLAAQVLPRHPAPHSGQILGSAERQFLESFI
MSHEGCGVLDNTVLQQTAFRLMTHGAGGLSRLMEGQGTLAVTVAAANGSL
LWERGTSAVIAAAANESLLWSALACGAAMLHPIDRPRLEAYIECAAVTLR
QCSDAPTMEVLRGHLTLAWLYMMLDDFAG*
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mRNA from alignment at Contig_147:16495..19460+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16810 ID=mRNA_16810|Name=jgi.p|Trimin1|353160|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2966bp|location=Sequence derived from alignment at Contig_147:16495..19460+ (Tribonema minus UTEX_B_3156 )
ATGACAGTTCTTCCTCCTGAGCGCTGACATCGATTCCTCGCCCGCCTCCG
CATAAGGCGGCCAAGCGCGGGCCCAAGCCCAAGAGAGCGCCCACGGTGCA
CAAGCTGAGGCGCCCCGCTGCCGCTGCCACAAAGCCAGAGTCCGGCATCG
GCGCCGACGGCGGTGGCGCTGATGCTCAGCAGCAGCAGCAGCAGCGGCGG
CGGCGGCAGCAGCAGCGGCAGCAGCAGCAGCGGCAGCAGCAGCAGGAGCT
GCAGCGGCAGCTGGCAGCGCAGGTGCTGCCGCGGCACCCCGCACCGCACT
CCGGCCAGATCCTGGGCAGCGCCGAGAGGCAGTTCCTGGAGAGCTTCATC
ATGTCGCACGAGGGCTGTGGGGTGCGTGCTGTACTCGACCACAAAACCTG
CTGCTGCTGCTGAACTCGTCTTCAAGAGTTGCATCTCTGACGGGGGCAAA
GCACTGGTGATTTCTATAAGTAGGTAGTGATTACGACCATCGTTGCTTGA
TGGTTTATCTACCAAGTAGTTCTCGCTTGGTGCGCACAGAAGCCCAGATG
ATTGATGTGAAGGTTGCTACCAGACTCCATACTTGTGATCAGCCAGGCGC
AGGCAGGCATGCGTCAGATGTCCAACCGTAGTCCCAACCCTAGTAGTAGT
ACATGAGGCGTCAGCAAAGCGACTGGCTACGTATGACACGGTTTGCCTCA
AAGCGTACCTCTGCAGGTGCTCCACGTCCACAGCACGGCACACTGAACTT
GTGAAGTTCACTTTCACTTGAAGTTCATGATCACTGTCCAAGAACTTGAG
CACTGCCATGCGTTAGGGTTAGGGTTAGGGTTAAAGTTAGGATTAGGGTT
AGGGTTAGCGCCATGCGCATCACGGCTCAGCGCTGCTGGCGCGTGCTCAC
CATGCACCGCGCCATTGCGTCTTCCAGCGAACGCCACTAGCGGACCGCAG
CCATGCACACCATCGTTGATCGCCATGGTGTTGATCGCCATGGTGCACAG
CCCACATGTTGGGTGTGACTTCGCCAGTAGTGATGTGTGCTAGGTTTCTG
AAACACCTGCCTTCATGCATAGAACACAGTCAGTCAATCAACAACCGTCA
ACACATGACGCACTCTCATGTAGACAAATGGTATTTGCTCGAGAGAGCGT
CGTCTAACACGCCTGGTGTGCACTCTGCGGTGCTTCGACAGGTGTTGGAC
AACACCGTGCTTCAGCAAACGGCCTTCAGGCTCATGACGCACGGCGCAGG
CGGCCTCAGCAGGCTCATGGAGGGGCAGGTATGTATGCATGCTACCTCAA
GTAGTTGGAGTACATCAAGGTGATGTATGCTATGGAATGTCAGCGCCATG
TCATTCAATGTTGTAATAGAAATCTGATTTGAAGTAGGCTCAGGCGGCCT
TAGCAGGTTCATGGACGGGCAGGTATGCACGCATGCTGCAGCTCACATTT
GAAGTACTTGAAGTACATAAACGATGCGGCGGTTTCAGCAGTTCAAGCAC
ATCAAGGTGTTGTACATTGATTTTATTGGCATGTCATTCAATACTTCTAT
GACAGAGTTCTTATCCAATACCGTAAAGCTCTGACTCAGCATCTGACTGG
CATACAGCTCCGGCGGTCTCAGGCTCGAAGAGGGGCAGGTATGTACGCAT
GCTGCAGCTCAAACCTCAAGTACTTGTCGCACCGCTGCTGTCCTCCGGCG
CAGGCCAAAAAAAAAAAGAAAAAAACCAACAAAAGTGTCATGCTGGCAGG
CGCCGCAACGGCAGCACACCGAGCTCCAGACCTTGCGCTGCCGCCGTAGC
CGGTCTTATGGTGCAGTACATCCGAATGATGCAAATTGATCACATAGTGG
CTCGTGTGCGCGCCTGCCTCTGAGACATCGGGGGACCGCTTTGCTCTCGG
ATTTGCGAACGCCGCTGCAAAGGCAGCGCGCGATTCGCGGACGTGTTGAG
TGCTGGGGCGCAATGCAGCGACGCTCCGATGCAGCAACGCTCAGCTACTG
CTGTGCACTGCCACGGGATACCCTGACCCCGAATCATCACCAATTCCTGC
GTGTGGTCCCTCACAAACCGCTTCGCAGAAGCAACTCACCTTGACACATG
CATATCATACCCTACCCATAGCATGCCCGATCCACGCGTGCTCGCTCGGA
ACCCATCTCTCGCTTTGAGAGCTTGTGCTGTCGCTGCGGCCGTCACAGCG
CCGCATGACTCTGGCTGAAAGCTGGAGATGGTAACCCGTCAACCTCAAAT
TTTTGTTTTTCGGTCGCAAACACAGGTGCCTCATGGCACAGGAGATGCCA
GCAGTGACAGTAGCGGCGGCAAATGAGTCGCGTCCCATCTGACCTCAAGT
ACCACTTGAAGTACGTTACATACATGCTAACATTCAGTTCCAAAAGCAGC
TGCTGCTTAGCGTACAGGGGACGCTGGCGGTGACCGTGGCGGCGGCGAAT
GGGTCGTTGCTCTGGTCCGCGCTCGCCTGCGGCGCAGCGATGCTCCACTC
AAGTGCTGCTTGAAGTTAATCAAGCGTGACCCCTCTTGCGAAGCCTCATA
CACGCGTGCTGCTGCTGACGAGCAATGCAGGGAACGCGTGCGTTCACCGC
GGCGGCGGCGAATGAGTCGTTGCTCTGGTCCGCACTCGCGTCAGGCGCAG
CGATGCTCCACCCCATCAGCCTCAACTTATTCTTGAAGTTAATCGCACAT
GCCTCAAACTCGCGCGTTGCTGTTGACGCGCAACGCAGGGAACGTCTGCG
GTCATCGCAGCGGCGGCGAACGAGTCGTTGCTCTGGTCCGCACTCGCATG
CGGCGCAGCGATGCTCCACCCCATCGACCGGCCGCGCCTCGAAGCGTACA
TCGAGTGCGCCGCGGTGACGCTGCGTCAGTGCTCCGACGCGCCGACCATG
GAGGTGCTGCGCGGCCACCTGACGCTCGCGTGGCTCTACATGATGCTGGA
CGACTTTGCCGGGTGA
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Coding sequence (CDS) from alignment at Contig_147:16495..19460+

>mRNA_16810 ID=mRNA_16810|Name=jgi.p|Trimin1|353160|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=690bp|location=Sequence derived from alignment at Contig_147:16495..19460+ (Tribonema minus UTEX_B_3156 )
ATGACAGCGGCCAAGCGCGGGCCCAAGCCCAAGAGAGCGCCCACGGTGCA
CAAGCTGAGGCGCCCCGCTGCCGCTGCCACAAAGCCAGAGTCCGGCATCG
GCGCCGACGGCGGTGGCGCTGATGCTCAGCAGCAGCAGCAGCAGCGGCGG
CGGCGGCAGCAGCAGCGGCAGCAGCAGCAGCGGCAGCAGCAGCAGGAGCT
GCAGCGGCAGCTGGCAGCGCAGGTGCTGCCGCGGCACCCCGCACCGCACT
CCGGCCAGATCCTGGGCAGCGCCGAGAGGCAGTTCCTGGAGAGCTTCATC
ATGTCGCACGAGGGCTGTGGGGTGTTGGACAACACCGTGCTTCAGCAAAC
GGCCTTCAGGCTCATGACGCACGGCGCAGGCGGCCTCAGCAGGCTCATGG
AGGGGCAGGGGACGCTGGCGGTGACCGTGGCGGCGGCGAATGGGTCGTTG
CTCTGGGAACGCGGAACGTCTGCGGTCATCGCAGCGGCGGCGAACGAGTC
GTTGCTCTGGTCCGCACTCGCATGCGGCGCAGCGATGCTCCACCCCATCG
ACCGGCCGCGCCTCGAAGCGTACATCGAGTGCGCCGCGGTGACGCTGCGT
CAGTGCTCCGACGCGCCGACCATGGAGGTGCTGCGCGGCCACCTGACGCT
CGCGTGGCTCTACATGATGCTGGACGACTTTGCCGGGTGA
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