Trimin1|353142|estExt_Genemark1.C_Ctg_1460009 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353142
Unique NameTrimin1|353142|estExt_Genemark1.C_Ctg_1460009
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length846
Homology
BLAST of jgi.p|Trimin1|353142 vs. uniprot
Match: A0A835Z8S8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8S8_9STRA)

HSP 1 Score: 590 bits (1522), Expect = 2.560e-196
Identity = 375/375 (100.00%), Postives = 375/375 (100.00%), Query Frame = 0
Query:    1 MAQSEEDTAVPHAHKSGGSRKRRRERANSTGEPHNGDSTTVVSPFEEVSLALCISLLPHALSDIFGSIRKNVYKLLMHYNRDVGGVIVALGDIRMADGEHHGRIMEEMPHLHFNIEANAQVFRPRSGALLNGRVMKPPLHAAFSCVYAQVSGTHVSMLVCGIFNASIYAGELEGVGYAYSDARARWERXXXXXXXXXXXXXXXGPDAVEMGTSLDFTVRRLHQAQGLISIEGGLIANGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPRCLPPVRISSCVQDAVYDKLCDPQAFIQARSTEGRGGALSSTGAPSAXXXXXXXXXXKLTTVDESGSCEIAAAGGHLEVLQWLRHINCGWSEAT 375
            MAQSEEDTAVPHAHKSGGSRKRRRERANSTGEPHNGDSTTVVSPFEEVSLALCISLLPHALSDIFGSIRKNVYKLLMHYNRDVGGVIVALGDIRMADGEHHGRIMEEMPHLHFNIEANAQVFRPRSGALLNGRVMKPPLHAAFSCVYAQVSGTHVSMLVCGIFNASIYAGELEGVGYAYSDARARWERXXXXXXXXXXXXXXXGPDAVEMGTSLDFTVRRLHQAQGLISIEGGLIANGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPRCLPPVRISSCVQDAVYDKLCDPQAFIQARSTEGRGGALSSTGAPSAXXXXXXXXXXKLTTVDESGSCEIAAAGGHLEVLQWLRHINCGWSEAT
Sbjct:    1 MAQSEEDTAVPHAHKSGGSRKRRRERANSTGEPHNGDSTTVVSPFEEVSLALCISLLPHALSDIFGSIRKNVYKLLMHYNRDVGGVIVALGDIRMADGEHHGRIMEEMPHLHFNIEANAQVFRPRSGALLNGRVMKPPLHAAFSCVYAQVSGTHVSMLVCGIFNASIYAGELEGVGYAYSDARARWERXXXXXXXXXXXXXXXGPDAVEMGTSLDFTVRRLHQAQGLISIEGGLIANGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPRCLPPVRISSCVQDAVYDKLCDPQAFIQARSTEGRGGALSSTGAPSAXXXXXXXXXXKLTTVDESGSCEIAAAGGHLEVLQWLRHINCGWSEAT 375          
BLAST of jgi.p|Trimin1|353142 vs. uniprot
Match: A0A6H5JDH5_9PHAE (RPA43_OB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDH5_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 2.270e-41
Identity = 85/192 (44.27%), Postives = 114/192 (59.38%), Query Frame = 0
Query:   43 SPFEEVSLALCISLLPHALSDIFGSIRKNVYKLLMHYNRDVGGVIVALGDIRMADGEHHGRIMEEMPHLHFNIEANAQVFRPRSGALLNGRVMKPPLHAAFSCVYAQVSGTHVSMLVCGIFNASIYAGELEGVGYAYSDARARWERXXXXXXXXXXXXXXXGPDAVEMGTSLDFTVRRLHQAQGLISIEGGL 234
            SPFEEV L +C+SLLP  + DI+  IR+N+Y+ LM YN  +GGV++A+ ++   DG   GRI +EMPH+HF+++A AQVFRPR G +L GRV K             V+ THV MLVCGIFNAS+ A E  G G+ +      W+R                 + + +G    F V R+H+A GLISIEG L
Sbjct:    4 SPFEEVELKMCVSLLPSDIGDIYAGIRRNIYQFLMRYNEALGGVLLAVSNLSFGDGAREGRIEDEMPHIHFDVKAKAQVFRPRPGHVLQGRVNK-------------VTSTHVGMLVCGIFNASV-ASESMGEGFRFDMTAREWQRSRGGKDGAR--------EVIAVGADTQFVVTRMHEAAGLISIEGSL 173          
BLAST of jgi.p|Trimin1|353142 vs. uniprot
Match: A0A4D9D057_9STRA (RPA43_OB domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D057_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.280e-21
Identity = 63/201 (31.34%), Postives = 102/201 (50.75%), Query Frame = 0
Query:   38 STTVVSPFEEVSLALCISLLPHALSDIFGSIRKNVYKLLMHYNRDVGGVIVALGDIRMADGEHHGRIMEEMPHLHFNIEANAQVFRPRSGALLNGRVMKPPLHAAFSCVYAQVSGTHVSMLVCGIFNASIYAGELEGVGYAYSDARARWERXXXXXXXXXXXXXXXGPDAVEMGTSLDFTVRRLHQAQGLISIEGGLIANG 238
            S  +  PF+E  +   ++LLP A+ ++  SI + ++ +LM YN+DVGG+++ L  +R         +M ++PHLH  +EA + VF P  G  L G V+K             V+ THV++LV  +FNA+I A E     YA+ + R  W                 G + + +G  + F V  +H+A GLI+++G L   G
Sbjct:   25 SPVIQVPFQEQRVLFKLALLPDAMGNLEESIHEKLHDMLMKYNQDVGGILLTLSQVRFPPSRRFASVMGDLPHLHVRVEATSLVFTPEPGMSLTGVVIK-------------VTSTHVALLVYDLFNAAI-AREDMPEAYAFDNDREAW-------------VGTGGKEVLGLGEEVAFRVALVHEAAGLIALDGSLREEG 198          
BLAST of jgi.p|Trimin1|353142 vs. uniprot
Match: A0A7S1XUY3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUY3_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 8.720e-19
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 0
Query:   43 SPFEEVSLALCISLLPHALSDIFGSIRKNVYKLLMHYNRDVGGVIVALGDIRMADGEHHGRIMEEMPHLHFNIEANAQVFRPRSGALLNGRVMK 136
            SPFE V+L +C SLLP +L D+ G +R+ +++LLM Y  + GGV+V   +I  A G  HGRI +E PH+HF+I A A VF P++G  L G V +
Sbjct:   34 SPFEVVTLRVCCSLLPSSLGDVPGGVRRQLFRLLMRYLPEAGGVVVGFQNIGFAPGARHGRIHDEEPHIHFDIVARALVFAPQAGLELVGEVQR 127          
BLAST of jgi.p|Trimin1|353142 vs. uniprot
Match: A0A7S3L6X0_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L6X0_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 8.540e-18
Identity = 69/208 (33.17%), Postives = 100/208 (48.08%), Query Frame = 0
Query:   27 ANSTGEPHNGDSTTVVSPFEEVS-LALCISLLPHALSDIFGSIRKNVYKLLMHYNRDVGGVIVALGDIR-MADGEHHGRIMEEMPHLHFNIEANAQVFRPRSGALLNGRVMKPPLHAAFSCVYAQVSGTHVSMLVCGIFNASIYAGELEGVGYAYSDARARWERXXXXXXXXXXXXXXXGPDAVEMGTSLDFTVRRLHQAQGLISIEG 232
            A+ST   +  +ST   S    V  L L  S+LP  LSD+  SI + +   L+ Y+  V G I+   ++  +ADG   GRI+EE+PH+H++I  +A VF P   A L GRV              +   +HVSM+V   FNASI A  L   G+ Y   +  W                   D +E  + L F   ++H+A G+ISI+G
Sbjct:   37 ASSTEHVNLNESTETRSNLLSVKKLRLSASILPSGLSDVKTSIDRCIRDFLLKYSDAVDGTIMGYKNVEILADGR--GRIVEELPHIHYDIRCDALVFSPVPNARLRGRV-------------TESFHSHVSMVVFNYFNASISASRLREAGFEYDADKESWYNIE-------------SEDTIEKSSYLVFAAEKIHEAVGMISIDG 216          
BLAST of jgi.p|Trimin1|353142 vs. uniprot
Match: A0A7S4JX32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JX32_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.740e-17
Identity = 54/192 (28.12%), Postives = 96/192 (50.00%), Query Frame = 0
Query:   43 SPFEEVSLALCISLLPHALSDIFGSIRKNVYKLLMHYNRDVGGVIVALGDIRMADGEHHGRIMEEMPHLHFNIEANAQVFRPRSGALLNGRVMKPPLHAAFSCVYAQVSGTHVSMLVCGIFNASIYAGELEGVGYAYSDARARWERXXXXXXXXXXXXXXXGPDAVEMGTS--LDFTVRRLHQAQGLISIEG 232
            SPF  V +   +SL P +L D+ G++R+   + +  Y   +GGV++A+ D+R+      GR++ E+P++HF++E +A +F P  G  L G V     + +F         +HV +LV G  NAS+ A ++   GY +      W                       +G S  + FT++++H+  G++S+EG
Sbjct:  140 SPFRRVKVRAVVSLSPSSLLDVQGNVRRLSCEDVTRYAGGLGGVLLAVEDVRLLRDGGKGRVVNELPYVHFDVEVSAVIFNPSIGTRLTGEV-----NESFP--------SHVGVLVNGFINASVSADQMREAGYVFDGESNEWRNGNAAYSEDAAVKKEPAAPEEMVGASDRITFTLQKVHECDGIVSMEG 318          
BLAST of jgi.p|Trimin1|353142 vs. uniprot
Match: A0A6V2ITE1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2ITE1_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 3.080e-16
Identity = 56/194 (28.87%), Postives = 94/194 (48.45%), Query Frame = 0
Query:   43 SPFEEVSLALCISLLPHALSDIFGSIRKNVYK-LLMHYNRDVGGVIVALGDIRMADGEHH---GRIMEEMPHLHFNIEANAQVFRPRSGALLNGRVMKPPLHAAFSCVYAQVSGTHVSMLVCGIFNASIYAGELEGVGYAYSDARARWERXXXXXXXXXXXXXXXGPDAVEMGTSLDFTVRRLHQAQGLISIEG 232
            S F    + L +SLLP ALSD+  S+ K +   +L+ +N  + G+++A   +++   +     G IM EMPH+H+N+E NA +F P+ G  L+G             V  ++  +HVS+L+   FNA++ A  L   GY +      W                   + + +   + FTV  LH+  G++S+EG
Sbjct:   98 SAFFNKKIQLVVSLLPSALSDVVQSVTKLISNSMLLRFNDSMDGILLAFDSVKICKTKKKTVGGYIMNEMPHIHYNVEMNALIFSPKIGMRLSG-------------VVNELFPSHVSVLIHSFFNATVSADHLRKAGYTFDADTFEW-----ITERSRGSINGNSSNELSLEDEVSFTVDTLHECAGIMSMEG 273          
BLAST of jgi.p|Trimin1|353142 vs. uniprot
Match: T0RQ13_SAPDV (RPA43_OB domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0RQ13_SAPDV)

HSP 1 Score: 85.1 bits (209), Expect = 1.310e-14
Identity = 61/195 (31.28%), Postives = 91/195 (46.67%), Query Frame = 0
Query:   42 VSPFEEVSLALCISLLPHALSDIFGSIRKNVYKLLMHYNRDVGGVIVALGDIRMADGEHHGRIMEEMPHLHFNIEANAQVFRPRSGALLNGRVMKPPLHAAFSCVYAQVSGTHVSMLVCGIFNASIYAGELEGVGYAYSDARARWERXXXXXXXXXXXXXXXGPDAV--EMGTSLDFTVRRLHQAQGLISIEGGL 234
            +SPF    L +  SL P  + D    + + +  +LM Y   V GVI+A   I + +   +G I+ E P++H  + A+A VFRP  G  L             S V  +V   H+ +L+ G+FN SI A E+   GY ++     W                 G D V  E+G  + F V R+HQA G+ISI+G +
Sbjct:   13 MSPFVNAKLVMSCSLAPCHIHDAKKGLEEQLNLMLMKYCDPVEGVILAFNAITLLNP--YGHIINETPYIHVRVAADALVFRPTPGMEL-------------SAVVNKVGSNHIGLLLAGVFNVSIDAAEMPD-GYTHNFHEEAW----------------VGDDGVTIELGAEVAFNVLRVHQAYGVISIDGSM 175          
BLAST of jgi.p|Trimin1|353142 vs. uniprot
Match: A0A7S2UC88_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UC88_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.620e-14
Identity = 58/214 (27.10%), Postives = 101/214 (47.20%), Query Frame = 0
Query:   28 NSTGEPHNG----DSTTVVSPFEEVSLALCISLLPHALSDIFGSIRKNVYKLLMHYNRDVGGVIVALGDIRMADGEHHG-----RIMEEMPHLHFNIEANAQVFRPRSGALLNGRVMKPPLHAAFSCVYAQVSGTHVSMLVCGIFNASIYAGELEGVGYAYSDARARWERXXXXXXXXXXXXXXXGPDAVEMGTSLDFTVRRLHQAQGLISIEG 232
            NS G+ H      D T + SPF +  L+L +SL P +L  +   I +++  LL+ ++  V G+++A  ++++   E  G     RI+ EMP +H+ +  +A VF P  G  L G+V     + +F         +H+ MLV   FNA + +  L   GY +      W                    A+ +   ++F++ +LH+  G+IS+EG
Sbjct:   66 NSPGKVHTKEAIRDETGLPSPFTKRQLSLLVSLYPASLGSVSDHICRSIRSLLLKFSDGVDGILLAFDNVKILGREQEGDLGRGRILNEMPQIHYRVLLDALVFCPVVGMKLTGKV-----NESFP--------SHIGMLVHAFFNAMVSSDHLRAAGYIFDRDAQHWTSSVDNT-------------AIGIDDQVEFSLDKLHECAGVISLEG 253          
BLAST of jgi.p|Trimin1|353142 vs. uniprot
Match: A0A1Y1HMN1_KLENI (DNA-dependent RNA polymerase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HMN1_KLENI)

HSP 1 Score: 78.6 bits (192), Expect = 3.370e-12
Identity = 55/193 (28.50%), Postives = 89/193 (46.11%), Query Frame = 0
Query:   47 EVSLALCISLLPHALSDIFGSIRKNVYKLLMHYNRDVGGVIVALGDIRMADGEHHGRIMEEM-PHLHFNIEANAQVFRPRSGALLNGRVMKPPLHAAFSCVYAQVSGTHVSMLVCGIFNASIYAGELEGVGYAYSDARARWERXXXXXXXXXXXXXXXGPDAVEMGTSLDFTVRRLHQAQGLISIEGGLIANG 238
            +V   L I + P    D+  ++R+++  LLM YN + GGV++A  D+ +   +  GRI+  + P++H ++ A   VF P +  +L G V K             V   H+ +L  G FNASI A E+ G  + Y    + W                 G   + +GT +DF V R+H     +S+ G L+  G
Sbjct:   11 QVQAKLRIEMHPSQAEDVKVAVREHLNTLLMRYNEEFGGVVLAYSDVVLLGRK--GRILTTLSPYIHLDLTARLLVFAPAAQNVLAGSVNK-------------VGPAHIGLLALGAFNASIRADEI-GDAFQYDPDASAW---------------VDGSSRIAVGTEVDFAVDRVHDEGNFLSLSGSLLLPG 172          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353142 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A835Z8S8_9STRA2.560e-196100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JDH5_9PHAE2.270e-4144.27RPA43_OB domain-containing protein n=2 Tax=Ectocar... [more]
A0A4D9D057_9STRA3.280e-2131.34RPA43_OB domain-containing protein n=2 Tax=Monodop... [more]
A0A7S1XUY3_9STRA8.720e-1947.87Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3L6X0_9STRA8.540e-1833.17Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S4JX32_9STRA1.740e-1728.13Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A6V2ITE1_9STRA3.080e-1628.87Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
T0RQ13_SAPDV1.310e-1431.28RPA43_OB domain-containing protein n=2 Tax=Saprole... [more]
A0A7S2UC88_9STRA3.620e-1427.10Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A1Y1HMN1_KLENI3.370e-1228.50DNA-dependent RNA polymerase n=1 Tax=Klebsormidium... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 327..561
e-value: 5.1E-8
score: 34.3
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 562..836
e-value: 8.0E-10
score: 39.8
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilyGENE3D3.30.1490.120coord: 31..127
e-value: 5.1E-12
score: 47.6
NoneNo IPR availableGENE3D2.40.50.1060coord: 146..283
e-value: 3.6E-8
score: 35.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 259..281
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 189..209
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40
NoneNo IPR availablePANTHERPTHR46586ANKYRIN REPEAT-CONTAINING PROTEINcoord: 639..832
coord: 532..719
coord: 348..536
NoneNo IPR availablePANTHERPTHR46586:SF3ANKYRIN REPEAT-CONTAINING PROTEINcoord: 639..832
coord: 532..719
coord: 348..536
NoneNo IPR availableSUPERFAMILY140860Pseudo ankyrin repeat-likecoord: 701..783
NoneNo IPR availableSUPERFAMILY140860Pseudo ankyrin repeat-likecoord: 389..589

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_146contigContig_146:77053..82237 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353142mRNA_16134Tribonema minus UTEX_B_3156 mRNAContig_146 77053..82237 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353142|estExt_Genemark1.C_Ctg_1460009 ID=Trimin1|353142|estExt_Genemark1.C_Ctg_1460009|Name=jgi.p|Trimin1|353142|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=846bp
MAQSEEDTAVPHAHKSGGSRKRRRERANSTGEPHNGDSTTVVSPFEEVSL
ALCISLLPHALSDIFGSIRKNVYKLLMHYNRDVGGVIVALGDIRMADGEH
HGRIMEEMPHLHFNIEANAQVFRPRSGALLNGRVMKPPLHAAFSCVYAQV
SGTHVSMLVCGIFNASIYAGELEGVGYAYSDARARWERRSRDGDGGSGGG
GSGGPDAVEMGTSLDFTVRRLHQAQGLISIEGGLIANGGGGGGGGGAKAA
AADALAEEDGAAAENGDGGEPHRKKKKKRRPRCLPPVRISSCVQDAVYDK
LCDPQAFIQARSTEGRGGALSSTGAPSAAAALLCGGGGKLTTVDESGSCE
IAAAGGHLEVLQWLRHINCGWSEATCIAAARAGHLDVLQWAHANGCPWGT
DTCTAAAKCGDLEVLQFARAAGCPWDRWVCTSAADLGHLEVLRWARANGC
PWDAQSACSNAAVLGRLDVLQFAHADGQPWDERTCRYAALHNHLELLQWA
HANGCPWDARTCGIAAEKGHFEVLQWAHANGCPWDDRTSQPLTEGGPLDM
LQWAQRHGCPMPADTCILAVTRGDLRMLQWARSVGCPWDAKVCAVAAQSC
LFPILQWAHANGCPRDERTCSGAAKYGDLRMLQWAQRRGCPTPADACSIA
VSRNDLRMLQWARSIGCPWDAEVCASAAKLGILRILRWAHANGCPWDERT
CSRAAENGDLRMLQWAWEHWSPWDERTCSHAAENGDLRMLQWAWEHRCPW
DEWTCSHAAKNGDLRMLRWARERGCPWEERTCINAASGGHLRVLQWARAN
GCPWNCYVIACADYEHHQHVVEWARANGCPERPEAVSSGSEGGYY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR036898RNA_pol_Rpb7-like_N_sf